Rorug05G0140100

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0003295
Physical Location & Seq
Forward (+)
12755506 .. 12759386
3881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0140100.1

Sequence Viewer

Length: 1893 bp
ATGTTCAGCATGGAAATCTTAGTTGCCCCATTTGCCGAGCAATATGGGATAAGCATAATGTTCCTTTCCAACCAAACAACTGGACTACTTCCCCCTCTCAACAAAACAACTCAGGTGATCCCCCCTCACCCATGGGGTGTTTTCCCTCAGCAAAACAACTTGGGTGGGAACTCTCCCAACATCTCATTCTCATTCCACCCGCAACAGCCACCCCATCAGACTTATCATCAGTACTCGTATCAGCAACCCAGTTGGAATTATCCTTCCTTCCCATTCGTGCAGCAACCCCAGGCCCCTCCCCAGCCACCTAGCTTCTCTGATGATGAACCTCTTTTGTCCACCTCACCCATGCAATCCAATGACCCCCAGGGTATAACAATTAAGACTCAGACCGAGTCCTTGGCTATCTCTGCTGCAGAATCTCATCCACGATATCCTGTTCTTGTCAGCATTTGCGCACCATCTCTTCAAGATACCGATGGCCATGGGAGTACCCCGGTCGACCTTGTGACAGTTCTGGATGTCAGTGGCAGCATGTGTGGCCTAAAGCTTGACCTTGTAAAGTGCGCTGTCAAATTTATCATACAAAACTTGGGGCCTTCAGACCGCCTTTCAATAGTTACATTCTCAACAACTGCTAGAAGAGTCTTTCCTCTCAGAAGAATGTCTGTTGAAGGCCGTGAAAGTGCTGTGCGAGCTGTCAATTCTCTTAGACCAGATAACATGACCAACATTGTGGCAGGACTCGAGATAGGAATTCGGGTCCTTGAAGAACGAAGGGAAAGGAACCCAGTTGCTAGCATCATGCTTTTATCCGATGGTGTGGATTCTTACTGTCATAGTCCAAGCCAACTGTTGGGCCAATTGCCTGCTTCGATTCGCTCTAATTGTATGCAACATGAAATTCCAGTCCACACATTTGGCTTTGGCAGCGACCATGATCCAAATACTATGCATGCTATATCTAATGCATCAGGTGGCACCTTTTCATTCATTGAATCAGTTGGCATGATACAAGATTCCTTTGCTCTGTGCATTGGTGGTCTTCTCAGTGTTGTGGCTCAGGAAGTTCGCCTCACAGTAAGGTCAGCATCACGTGGTGTGAAGATTGTAGCAATACCATCAGGGAGATATGTCAGAAATATATCTGATGAGGGCTTGCAGGGTGTTGTTGATGTTGGGAGTCTCTACGCAGAAGAGGAGAAACAATTTCTGGTCTACCTCTTAGTTCCACAATCCTCAGCTTCAGATACAAGGACATCATTGTTAGACGTGTCATGCGTGTACAGAGATCTAGCTTCAAATGAGTTAATCCAGATGCAAGGTGAGCTAGTTGAGATACCGAGACCTGTGGTTTGTTCCCCTGCAGATCAGGTAGTCTCTTTAGAGGTTGATCGCCAGCGCAACAGAATTTTGGTCTCTGAAACTACAGCAGAGGCACAAGGGTTGGCTGAGATTGGAAATCTGGAGGCTGCAAGGGCCATTTTGACTCAACGAAGAGAAACTCTCTTAACAACACCAGCAGCCCGAGCAGGGGATGCTCTCAGCAATTTGCTCGAAACTGAGCTTCAAGAAATCATGGATAGAATGGCAACTATGGATTTGTATACTCACACTGGGCGTGCTTATGCCCTCTCGGGAATGAGCTCTCATTCACTGCAGAGAGCCACAACTAGGGGTGACACAACTACTTCATGCCTTTCCGCGAGTTTTGGTGCTGCTCAGGCTTCATATTCCGCTGGGGGTATCAATTACCTGCAGCGCGGTGGTATCTTTCAGCAGCAGCAGCAGCAGTCTCTCTCCGCAGGTGCCACTCCATTTGCGAGTCCAGCATCATTGCCGCTAGGTGGTGCTTATGAAACATCTTCTATGGTTAGAATGTGCTTCATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

630

Amino Acids

68.27

Weight (kDa)

5.37

Isoelectric Point (pI)

52.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VWA PF00092 168 - 334 1.5e-20 von Willebrand factor type A domain
VWA_3 PF13768 168 - 331 7e-17 von Willebrand factor type A domain
VWA_2 PF13519 169 - 274 1e-15 von Willebrand factor type A domain
Vwaint PF14624 514 - 564 2e-11 VWA / Hh protein intein-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1796
Acc16I TGCGCA 1 cut(s) 457
Acc36I ACCTGC 2 cut(s) 1764, 1796
AccB1I GGYRCC 2 cut(s) 980, 1808
AccB7I CCANNNNNTGG 1 cut(s) 856
AccI GTMKAC 3 cut(s) 501, 1218, 1607
AccII CGCG 2 cut(s) 1706, 1764
AciI CCGC 7 cut(s) 200, 607, 1704, 1737, 1764, 1803, 1841
AclWI GGATC 2 cut(s) 112, 935
AcoI YGGCCR 1 cut(s) 481
AcsI RAATTY 4 cut(s) 575, 756, 903, 1410
AcuI CTGAAG 2 cut(s) 585, 1230
AcvI CACGTG 1 cut(s) 1097
AdeI CACNNNGTG 1 cut(s) 1100
AfaI GTAC 3 cut(s) 233, 493, 1286
AfiI CCNNNNNNNGG 5 cut(s) 856, 1533, 1534, 1674, 1847
AflIII ACRYGT 1 cut(s) 1272
AgsI TTSAA 7 cut(s) 470, 615, 674, 770, 998, 1302, 1571
AjiI CACGTC 1 cut(s) 1273
AjnI CCWGG 2 cut(s) 288, 366
AjuI GAANNNNNNNTTGG 2 cut(s) 170, 202
AluBI AGCT 8 cut(s) 312, 550, 698, 1244, 1298, 1330, 1567, 1647
AluI AGCT 8 cut(s) 312, 550, 698, 1244, 1298, 1330, 1567, 1647
Alw21I GWGCWC 1 cut(s) 1649
Alw26I GTCTC 5 cut(s) 1190, 1339, 1384, 1423, 1800
AlwI GGATC 2 cut(s) 112, 935
Ama87I CYCGRG 3 cut(s) 746, 1527, 1636
AoxI GGCC 7 cut(s) 291, 481, 541, 596, 676, 859, 1479
ApoI RAATTY 4 cut(s) 575, 756, 903, 1410
ArsI GACNNNNNNTTYG 2 cut(s) 1338, 1370
AspLEI GCGC 4 cut(s) 458, 569, 1404, 1764
AspS9I GGNCC 5 cut(s) 292, 596, 763, 859, 1479
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 5 cut(s) 119, 127, 336, 1337, 1691
AsuNHI GCTAGC 1 cut(s) 797
AvaI CYCGRG 3 cut(s) 746, 1527, 1636
AvaII GGWCC 1 cut(s) 763
BalI TGGCCA 1 cut(s) 483
BanI GGYRCC 2 cut(s) 980, 1808
BanII GRGCYC 1 cut(s) 1649
BbrPI CACGTG 1 cut(s) 1097
BbsI GAAGAC 1 cut(s) 1037
Bbv12I GWGCWC 1 cut(s) 1649
BbvCI CCTCAGC 2 cut(s) 147, 1240
BccI CCATC 5 cut(s) 222, 469, 473, 812, 1129
BceAI ACGGC 1 cut(s) 663
BcgI CGANNNNNNTGC 2 cut(s) 1537, 1571
BciT130I CCWGG 2 cut(s) 290, 368
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 5 cut(s) 1190, 1339, 1384, 1423, 1800
BfaI CTAG 7 cut(s) 309, 639, 798, 1295, 1331, 1674, 1844
BfmI CTRYAG 5 cut(s) 414, 1365, 1428, 1658, 1757
BfuAI ACCTGC 2 cut(s) 1764, 1796
BglII AGATCT 1 cut(s) 1291
BmcAI AGTACT 1 cut(s) 233
Bme1390I CCNGG 3 cut(s) 290, 368, 497
Bme18I GGWCC 1 cut(s) 763
BmeT110I CYCGRG 3 cut(s) 746, 1527, 1636
BmgBI CACGTC 1 cut(s) 1273
BmgT120I GGNCC 5 cut(s) 292, 596, 763, 859, 1479
BmiI GGNNCC 6 cut(s) 294, 597, 764, 788, 982, 1810
BmrFI CCNGG 3 cut(s) 290, 368, 497
BmrI ACTGGG 3 cut(s) 243, 785, 1626
BmsI GCATC 6 cut(s) 810, 980, 1100, 1308, 1528, 1841
BmtI GCTAGC 1 cut(s) 801
BmuI ACTGGG 3 cut(s) 243, 785, 1626
BpiI GAAGAC 1 cut(s) 1037
BplI GAGNNNNNCTC 2 cut(s) 1491, 1523
BpmI CTGGAG 1 cut(s) 1487
Bpu10I CCTNAGC 4 cut(s) 147, 1062, 1240, 1722
BpuMI CCSGG 1 cut(s) 497
BsaAI YACGTR 1 cut(s) 1097
BsaI GGTCTC 2 cut(s) 1339, 1423
BsaJI CCNNGG 7 cut(s) 131, 288, 366, 367, 399, 484, 495
Bsc4I CCNNNNNNNGG 5 cut(s) 856, 1533, 1534, 1674, 1847
Bse1I ACTGG 5 cut(s) 85, 249, 791, 908, 1621
Bse3DI GCAATG 1 cut(s) 1835
BseBI CCWGG 2 cut(s) 290, 368
BseDI CCNNGG 7 cut(s) 131, 288, 366, 367, 399, 484, 495
BseGI GGATG 3 cut(s) 424, 526, 1543
BseLI CCNNNNNNNGG 5 cut(s) 856, 1533, 1534, 1674, 1847
BseMI GCAATG 1 cut(s) 1835
BseNI ACTGG 5 cut(s) 85, 249, 791, 908, 1621
BseRI GAGGAG 1 cut(s) 1214
BseYI CCCAGC 2 cut(s) 300, 1739
BsgI GTGCAG 1 cut(s) 299
Bsh1236I CGCG 2 cut(s) 1706, 1764
Bsh1285I CGRYCG 1 cut(s) 501
BshFI GGCC 7 cut(s) 293, 483, 543, 598, 678, 861, 1481
BshNI GGYRCC 2 cut(s) 980, 1808
BsiEI CGRYCG 1 cut(s) 501
BsiHKAI GWGCWC 1 cut(s) 1649
BsiHKCI CYCGRG 3 cut(s) 746, 1527, 1636
BsiSI CCGG 1 cut(s) 497
BslI CCNNNNNNNGG 5 cut(s) 856, 1533, 1534, 1674, 1847
BsmAI GTCTC 5 cut(s) 1190, 1339, 1384, 1423, 1800
BsnI GGCC 7 cut(s) 293, 483, 543, 598, 678, 861, 1481
Bso31I GGTCTC 2 cut(s) 1339, 1423
BsoBI CYCGRG 3 cut(s) 746, 1527, 1636
Bsp1286I GDGCHC 1 cut(s) 1649
Bsp1407I TGTACA 1 cut(s) 1284
Bsp143I GATC 5 cut(s) 117, 940, 1291, 1369, 1393
Bsp19I CCATGG 2 cut(s) 131, 484
BspACI CCGC 7 cut(s) 200, 607, 1704, 1737, 1764, 1803, 1841
BspANI GGCC 7 cut(s) 293, 483, 543, 598, 678, 861, 1481
BspFNI CGCG 2 cut(s) 1706, 1764
BspLI GGNNCC 6 cut(s) 294, 597, 764, 788, 982, 1810
BspMAI CTGCAG 4 cut(s) 418, 1369, 1662, 1761
BspMI ACCTGC 2 cut(s) 1764, 1796
BspOI GCTAGC 1 cut(s) 801
BspPI GGATC 2 cut(s) 112, 935
BspT107I GGYRCC 2 cut(s) 980, 1808
BspTNI GGTCTC 2 cut(s) 1339, 1423
BsrDI GCAATG 1 cut(s) 1835
BsrGI TGTACA 1 cut(s) 1284
BsrI ACTGG 5 cut(s) 85, 249, 791, 908, 1621
BssECI CCNNGG 7 cut(s) 131, 288, 366, 367, 399, 484, 495
BssMI GATC 5 cut(s) 117, 940, 1291, 1369, 1393
BssNAI GTATAC 1 cut(s) 1608
BssT1I CCWWGG 3 cut(s) 131, 399, 484
Bst1107I GTATAC 1 cut(s) 1608
Bst2UI CCWGG 2 cut(s) 290, 368
Bst4CI ACNGT 4 cut(s) 514, 836, 855, 1081
Bst6I CTCTTC 4 cut(s) 471, 637, 1191, 1492
BstAPI GCANNNNNTGC 1 cut(s) 1538
BstAUI TGTACA 1 cut(s) 1284
BstBAI YACGTR 1 cut(s) 1097
BstC8I GCNNGC 7 cut(s) 696, 799, 870, 957, 1160, 1400, 1623
BstDSI CCRYGG 2 cut(s) 131, 484
BstF5I GGATG 3 cut(s) 424, 526, 1543
BstFNI CGCG 2 cut(s) 1706, 1764
BstHHI GCGC 4 cut(s) 458, 569, 1404, 1764
BstKTI GATC 5 cut(s) 120, 943, 1294, 1372, 1396
BstMAI GTCTC 5 cut(s) 1190, 1339, 1384, 1423, 1800
BstMBI GATC 5 cut(s) 117, 940, 1291, 1369, 1393
BstMCI CGRYCG 1 cut(s) 501
BstNI CCWGG 2 cut(s) 290, 368
BstNSI RCATGY 2 cut(s) 538, 959
BstSCI CCNGG 3 cut(s) 288, 366, 495
BstSFI CTRYAG 5 cut(s) 414, 1365, 1428, 1658, 1757
BstUI CGCG 2 cut(s) 1706, 1764
BstV2I GAAGAC 1 cut(s) 1037
BstX2I RGATCY 1 cut(s) 1291
BstXI CCANNNNNNTGG 3 cut(s) 80, 736, 920
BstYI RGATCY 1 cut(s) 1291
BstZ17I GTATAC 1 cut(s) 1608
BsuRI GGCC 7 cut(s) 293, 483, 543, 598, 678, 861, 1481
BtgI CCRYGG 2 cut(s) 131, 484
BtrI CACGTC 1 cut(s) 1273
BtsCI GGATG 3 cut(s) 424, 526, 1543
BtsI GCAGTG 1 cut(s) 1655
BtsIMutI CAGTG 4 cut(s) 532, 1057, 1614, 1655
BveI ACCTGC 2 cut(s) 1764, 1796
Cac8I GCNNGC 7 cut(s) 696, 799, 870, 957, 1160, 1400, 1623
CfoI GCGC 4 cut(s) 458, 569, 1404, 1764
Cfr13I GGNCC 5 cut(s) 292, 596, 763, 859, 1479
Csp6I GTAC 3 cut(s) 232, 492, 1285
CspCI CAANNNNNGTGG 4 cut(s) 145, 180, 1801, 1836
CviQI GTAC 3 cut(s) 232, 492, 1285
DpnI GATC 5 cut(s) 119, 942, 1293, 1371, 1395
DpnII GATC 5 cut(s) 117, 940, 1291, 1369, 1393
DraIII CACNNNGTG 1 cut(s) 1100
EaeI YGGCCR 1 cut(s) 481
Eam1104I CTCTTC 4 cut(s) 471, 637, 1191, 1492
EarI CTCTTC 4 cut(s) 471, 637, 1191, 1492
Ecl136II GAGCTC 1 cut(s) 1647
Eco130I CCWWGG 3 cut(s) 131, 399, 484
Eco24I GRGCYC 1 cut(s) 1649
Eco31I GGTCTC 2 cut(s) 1339, 1423
Eco32I GATATC 1 cut(s) 434
Eco47I GGWCC 1 cut(s) 763
Eco53kI GAGCTC 1 cut(s) 1647
Eco57I CTGAAG 2 cut(s) 585, 1230
Eco72I CACGTG 1 cut(s) 1097
Eco88I CYCGRG 3 cut(s) 746, 1527, 1636
EcoICRI GAGCTC 1 cut(s) 1647
EcoO109I RGGNCCY 3 cut(s) 292, 596, 763
EcoRI GAATTC 1 cut(s) 756
EcoRII CCWGG 2 cut(s) 288, 366
EcoRV GATATC 1 cut(s) 434
EcoT14I CCWWGG 3 cut(s) 131, 399, 484
EcoT22I ATGCAT 2 cut(s) 957, 973
EcoT38I GRGCYC 1 cut(s) 1649
ErhI CCWWGG 3 cut(s) 131, 399, 484
FauI CCCGC 1 cut(s) 207
FauNDI CATATG 1 cut(s) 1889
FblI GTMKAC 3 cut(s) 501, 1218, 1607
FokI GGATG 3 cut(s) 411, 533, 1550
FriOI GRGCYC 1 cut(s) 1649
FspBI CTAG 7 cut(s) 309, 639, 798, 1295, 1331, 1674, 1844
FspI TGCGCA 1 cut(s) 457
GlaI GCGC 4 cut(s) 457, 568, 1403, 1763
GsaI CCCAGC 2 cut(s) 304, 1743
GsuI CTGGAG 1 cut(s) 1487
HaeIII GGCC 7 cut(s) 293, 483, 543, 598, 678, 861, 1481
HapII CCGG 1 cut(s) 497
HhaI GCGC 4 cut(s) 458, 569, 1404, 1764
Hin6I GCGC 4 cut(s) 456, 567, 1402, 1762
HinP1I GCGC 4 cut(s) 456, 567, 1402, 1762
HincII GTYRAC 1 cut(s) 502
HindII GTYRAC 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 548
HpaII CCGG 1 cut(s) 497
HphI GGTGA 5 cut(s) 119, 127, 336, 1337, 1691
Hpy166II GTNNAC 6 cut(s) 339, 502, 913, 1219, 1285, 1608
Hpy188III TCNNGA 8 cut(s) 470, 518, 748, 1064, 1315, 1466, 1571, 1638
Hpy8I GTNNAC 6 cut(s) 339, 502, 913, 1219, 1285, 1608
HpyAV CCTTC 5 cut(s) 273, 277, 609, 668, 771
HpyCH4III ACNGT 4 cut(s) 514, 836, 855, 1081
HpyCH4IV ACGT 2 cut(s) 1096, 1272
HpySE526I ACGT 2 cut(s) 1096, 1272
HspAI GCGC 4 cut(s) 456, 567, 1402, 1762
Kzo9I GATC 5 cut(s) 117, 940, 1291, 1369, 1393
LweI GCATC 6 cut(s) 810, 980, 1100, 1308, 1528, 1841
MaeI CTAG 7 cut(s) 309, 639, 798, 1295, 1331, 1674, 1844
MaeII ACGT 2 cut(s) 1096, 1272
MaeIII GTNAC 3 cut(s) 508, 619, 1679
MalI GATC 5 cut(s) 119, 942, 1293, 1371, 1395
MboI GATC 5 cut(s) 117, 940, 1291, 1369, 1393
MboII GAAGA 9 cut(s) 458, 654, 672, 782, 1037, 1117, 1208, 1509, 1857
MfeI CAATTG 1 cut(s) 863
MflI RGATCY 1 cut(s) 1291
MhlI GDGCHC 1 cut(s) 1649
MlsI TGGCCA 1 cut(s) 483
MluNI TGGCCA 1 cut(s) 483
MlyI GAGTC 7 cut(s) 379, 404, 654, 738, 1192, 1483, 1834
MmeI TCCRAC 2 cut(s) 93, 233
Mox20I TGGCCA 1 cut(s) 483
Mph1103I ATGCAT 2 cut(s) 957, 973
MscI TGGCCA 1 cut(s) 483
MseI TTAA 3 cut(s) 381, 1310, 1511
Msp20I TGGCCA 1 cut(s) 483
MspA1I CMGCKG 1 cut(s) 1739
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 3 cut(s) 290, 368, 497
MunI CAATTG 1 cut(s) 863
MvaI CCWGG 2 cut(s) 290, 368
MvnI CGCG 2 cut(s) 1706, 1764
NciI CCSGG 1 cut(s) 497
NcoI CCATGG 2 cut(s) 131, 484
NdeI CATATG 1 cut(s) 1889
NdeII GATC 5 cut(s) 117, 940, 1291, 1369, 1393
NheI GCTAGC 1 cut(s) 797
NlaIV GGNNCC 6 cut(s) 294, 597, 764, 788, 982, 1810
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 2 cut(s) 508, 1679
NsbI TGCGCA 1 cut(s) 457
NsiI ATGCAT 2 cut(s) 957, 973
NspI RCATGY 2 cut(s) 538, 959
PaeI GCATGC 1 cut(s) 959
PaeR7I CTCGAG 1 cut(s) 746
PaqCI CACCTGC 1 cut(s) 1796
PasI CCCWGGG 1 cut(s) 367
PcsI WCGNNNNNNNCGW 1 cut(s) 1278
PfeI GAWTC 5 cut(s) 419, 827, 877, 998, 1019
PflFI GACNNNGTC 1 cut(s) 394
PflMI CCANNNNNTGG 1 cut(s) 856
PleI GAGTC 7 cut(s) 379, 403, 653, 738, 1191, 1483, 1833
PmaCI CACGTG 1 cut(s) 1097
PmlI CACGTG 1 cut(s) 1097
PpsI GAGTC 7 cut(s) 379, 403, 653, 738, 1191, 1483, 1833
Ppu21I YACGTR 1 cut(s) 1097
PpuMI RGGWCCY 1 cut(s) 763
Psp124BI GAGCTC 1 cut(s) 1649
Psp5II RGGWCCY 1 cut(s) 763
Psp6I CCWGG 2 cut(s) 288, 366
PspCI CACGTG 1 cut(s) 1097
PspFI CCCAGC 2 cut(s) 300, 1739
PspGI CCWGG 2 cut(s) 288, 366
PspN4I GGNNCC 6 cut(s) 294, 597, 764, 788, 982, 1810
PspPI GGNCC 5 cut(s) 292, 596, 763, 859, 1479
PspPPI RGGWCCY 1 cut(s) 763
PstI CTGCAG 4 cut(s) 418, 1369, 1662, 1761
PsuI RGATCY 1 cut(s) 1291
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 3 cut(s) 233, 493, 1286
RsaNI GTAC 3 cut(s) 232, 492, 1285
SacI GAGCTC 1 cut(s) 1649
SalI GTCGAC 1 cut(s) 500
SaqAI TTAA 3 cut(s) 381, 1310, 1511
Sau3AI GATC 5 cut(s) 117, 940, 1291, 1369, 1393
Sau96I GGNCC 5 cut(s) 292, 596, 763, 859, 1479
ScaI AGTACT 1 cut(s) 233
SchI GAGTC 7 cut(s) 379, 404, 654, 738, 1192, 1483, 1834
ScrFI CCNGG 3 cut(s) 290, 368, 497
SduI GDGCHC 1 cut(s) 1649
SfaNI GCATC 6 cut(s) 810, 980, 1100, 1308, 1528, 1841
SfcI CTRYAG 5 cut(s) 414, 1365, 1428, 1658, 1757
Sfr274I CTCGAG 1 cut(s) 746
SinI GGWCC 1 cut(s) 763
SlaI CTCGAG 1 cut(s) 746
SmlI CTYRAG 1 cut(s) 746
SmoI CTYRAG 1 cut(s) 746
SphI GCATGC 1 cut(s) 959
SsiI CCGC 7 cut(s) 200, 607, 1704, 1737, 1764, 1803, 1841
SspMI CTAG 7 cut(s) 309, 639, 798, 1295, 1331, 1674, 1844
SstI GAGCTC 1 cut(s) 1649
StyD4I CCNGG 3 cut(s) 288, 366, 495
StyI CCWWGG 3 cut(s) 131, 399, 484
TaaI ACNGT 4 cut(s) 514, 836, 855, 1081
TaiI ACGT 2 cut(s) 1099, 1275
TaqI TCGA 4 cut(s) 501, 747, 875, 1557
TaqII GACCGA 1 cut(s) 407
TatI WGTACW 2 cut(s) 231, 1284
TauI GCSGC 1 cut(s) 1843
TfiI GAWTC 5 cut(s) 419, 827, 877, 998, 1019
Tru1I TTAA 3 cut(s) 381, 1310, 1511
Tru9I TTAA 3 cut(s) 381, 1310, 1511
TscAI CASTG 4 cut(s) 532, 1057, 1621, 1662
TseFI GTSAC 2 cut(s) 508, 1679
Tsp45I GTSAC 2 cut(s) 508, 1679
TspDTI ATGAA 8 cut(s) 339, 915, 978, 982, 1683, 1719, 1872, 1876
TspRI CASTG 4 cut(s) 532, 1057, 1621, 1662
Tth111I GACNNNGTC 1 cut(s) 394
Van91I CCANNNNNTGG 1 cut(s) 856
VpaK11BI GGWCC 1 cut(s) 763
XapI RAATTY 4 cut(s) 575, 756, 903, 1410
XceI RCATGY 2 cut(s) 538, 959
XhoI CTCGAG 1 cut(s) 746
XmiI GTMKAC 3 cut(s) 501, 1218, 1607
XspI CTAG 7 cut(s) 309, 639, 798, 1295, 1331, 1674, 1844
ZrmI AGTACT 1 cut(s) 233
Zsp2I ATGCAT 2 cut(s) 957, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.