Rorug04G0392300

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0003295
Physical Location & Seq
Reverse (-)
55930925 .. 55933903
2979 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0392300.1

Sequence Viewer

Length: 1119 bp
ATGGGGAGATGGAGAGCAGCTTCTCTTCTCCTCAAGAACATAGCCATAACCATAACCACCACACCACCCAAATCTTCTTCTCTTCTTTTCAAGCCTCCCAGTCTCTCACGCTCTTCTTCTTCCCAATTCTACTTGTTCCTCAAGTCTAGGCCTTTCTCTGCAATCCCATCTCGGGTCTCAATTGACCCGAATGATTTCGAATCCGGGCCGGCCTATTGCGCTCACGAACAACCCAATGAAGACGACGAAACCGGGAAAATCCCCATTAAGGCGTATTTCCTTTGCACCAGTATCAATTTGAAGAGCATGCAGGCCGAGTATTTAAGCAATGTCATTCCTCCTTCGTCTCGCTCAACCAATTATATTGCACTCAGATTTTGTGATTTCCCTTCGGAAAATAGTAGATTTGGAGTATGGGAGAATCCAAGCTCCTGGCGTTACATGGTAGTATTCCAGTATGGATCAACTGTTCTGTTTAATGTTGAGGAGCATGAAGTTCAGGCTTACCTAAATCTAGTCATAAGACATGCTTCTGGAATGCTACGAGAGATGGTCAAAGATGATTATGCTGTAAAAGAGAAGCCTCAGCTGGTTGACGATATGCAGGGTGGGCCAGACTACATAGTTCTTAGAACTTTGGACACGGATAGTATCCGCATTATTGGAAGTGTGCTTGGCCAAAGTATTGCTTTAGATTATTTTGTTTCGCAGGTTGATGGTATGGTTGAAGAGTTTGCAGATATAAATCGAGGAATGGAAAAAACTGGAACTTTTACTATGCATAAAAAGAAGCTCCTTCAACTCGTTGGAAAGGCTAACTCAACTCTAGCTGACGTAATTGTCAAAGTTGGTCTATTTGAGAGATCAGAAATTGCTTGGAGGGATGCAAAGTATGCTAAAATACATGAATACCTGAGGGAGGAGTATGAGGTTACACAACGATTTGGAAACTTGGATTTCAAGTTAAAATTTGTAGAGCACAACATTCATTTCTTGCAAGAAGTCCTACAAAACAGAAAGTCTGATCTTCTGGAATGGTGCATCATCTTCCTGTTGACTGTAGAGAATATTATATCACTATACGAGATTGTTCGTGATTCAGGTGCAGTTTCTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

372

Amino Acids

42.39

Weight (kDa)

5.89

Isoelectric Point (pI)

42.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF155 PF02582 148 - 318 7e-33 RMND1/Sif2-Sif3/Mrx10, DUF155
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 839
Acc36I ACCTGC 1 cut(s) 700
AciI CCGC 1 cut(s) 655
AclWI GGATC 1 cut(s) 469
AcoI YGGCCR 1 cut(s) 676
AcsI RAATTY 1 cut(s) 968
AfiI CCNNNNNNNGG 3 cut(s) 172, 268, 919
AgsI TTSAA 5 cut(s) 91, 301, 728, 800, 961
AjnI CCWGG 1 cut(s) 431
AloI GAACNNNNNNTCC 2 cut(s) 453, 485
AluBI AGCT 5 cut(s) 20, 429, 589, 793, 830
AluI AGCT 5 cut(s) 20, 429, 589, 793, 830
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 3 cut(s) 107, 181, 351
AlwI GGATC 1 cut(s) 469
AlwNI CAGNNNCTG 1 cut(s) 1112
Ama87I CYCGRG 1 cut(s) 171
AoxI GGCC 6 cut(s) 149, 206, 210, 312, 611, 676
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 968
Asp700I GAANNNNTTC 1 cut(s) 194
AspLEI GCGC 1 cut(s) 221
AspS9I GGNCC 2 cut(s) 206, 611
AsuC2I CCSGG 2 cut(s) 205, 253
AsuII TTCGAA 1 cut(s) 198
AvaI CYCGRG 1 cut(s) 171
AxyI CCTNAGG 1 cut(s) 914
BalI TGGCCA 1 cut(s) 678
BbsI GAAGAC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 981
BbvCI CCTCAGC 1 cut(s) 585
BbvI GCAGC 1 cut(s) 29
BccI CCATC 4 cut(s) 3, 175, 544, 710
BciT130I CCWGG 1 cut(s) 433
BciVI GTATCC 1 cut(s) 662
BcnI CCSGG 2 cut(s) 205, 253
BcoDI GTCTC 3 cut(s) 107, 181, 351
BfaI CTAG 3 cut(s) 147, 515, 827
BfmI CTRYAG 1 cut(s) 1059
BfuAI ACCTGC 1 cut(s) 700
BfuI GTATCC 1 cut(s) 662
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
Bme1390I CCNGG 3 cut(s) 205, 253, 433
BmeT110I CYCGRG 1 cut(s) 171
BmgT120I GGNCC 2 cut(s) 206, 611
BmrFI CCNGG 3 cut(s) 205, 253, 433
BmrI ACTGGG 1 cut(s) 93
BmsI GCATC 2 cut(s) 874, 1050
BmuI ACTGGG 1 cut(s) 93
BpiI GAAGAC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 198
BpuEI CTTGAG 2 cut(s) 17, 125
BpuMI CCSGG 2 cut(s) 205, 253
BsaBI GATNNNNATC 1 cut(s) 744
BsaI GGTCTC 1 cut(s) 181
Bsc4I CCNNNNNNNGG 3 cut(s) 172, 268, 919
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 4 cut(s) 99, 288, 454, 769
Bse21I CCTNAGG 1 cut(s) 914
Bse3DI GCAATG 1 cut(s) 334
Bse8I GATNNNNATC 1 cut(s) 744
BseBI CCWGG 1 cut(s) 433
BseGI GGATG 1 cut(s) 889
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 3 cut(s) 172, 268, 919
BseMI GCAATG 1 cut(s) 334
BseMII CTCAG 3 cut(s) 385, 599, 905
BseNI ACTGG 4 cut(s) 99, 288, 454, 769
BseRI GAGGAG 3 cut(s) 20, 500, 935
BseXI GCAGC 1 cut(s) 29
BshFI GGCC 6 cut(s) 151, 208, 212, 314, 613, 678
BsiHKAI GWGCWC 1 cut(s) 981
BsiHKCI CYCGRG 1 cut(s) 171
BsiSI CCGG 3 cut(s) 204, 209, 252
BslI CCNNNNNNNGG 3 cut(s) 172, 268, 919
BsmAI GTCTC 3 cut(s) 107, 181, 351
BsmBI CGTCTC 1 cut(s) 351
BsmI GAATGC 1 cut(s) 543
BsnI GGCC 6 cut(s) 151, 208, 212, 314, 613, 678
Bso31I GGTCTC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 171
Bsp119I TTCGAA 1 cut(s) 198
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 3 cut(s) 461, 863, 1024
BspACI CCGC 1 cut(s) 655
BspANI GGCC 6 cut(s) 151, 208, 212, 314, 613, 678
BspCNI CTCAG 3 cut(s) 384, 598, 906
BspMI ACCTGC 1 cut(s) 700
BspPI GGATC 1 cut(s) 469
BspQI GCTCTTC 2 cut(s) 118, 296
BspT104I TTCGAA 1 cut(s) 198
BspTNI GGTCTC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 334
BsrFI RCCGGY 1 cut(s) 208
BsrI ACTGG 4 cut(s) 99, 288, 454, 769
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 3 cut(s) 461, 863, 1024
Bst2UI CCWGG 1 cut(s) 433
Bst4CI ACNGT 2 cut(s) 469, 1060
Bst6I CTCTTC 5 cut(s) 30, 87, 118, 296, 723
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 198
BstC8I GCNNGC 3 cut(s) 210, 308, 312
BstDEI CTNAG 4 cut(s) 371, 585, 629, 914
BstENI CCTNNNNNAGG 1 cut(s) 917
BstF5I GGATG 1 cut(s) 889
BstHHI GCGC 1 cut(s) 221
BstKTI GATC 3 cut(s) 464, 866, 1027
BstMAI GTCTC 3 cut(s) 107, 181, 351
BstMBI GATC 3 cut(s) 461, 863, 1024
BstMWI GCNNNNNNNGC 3 cut(s) 218, 610, 893
BstNI CCWGG 1 cut(s) 433
BstNSI RCATGY 2 cut(s) 310, 530
BstSCI CCNGG 3 cut(s) 203, 251, 431
BstSFI CTRYAG 1 cut(s) 1059
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 246
BstXI CCANNNNNNTGG 1 cut(s) 432
Bsu36I CCTNAGG 1 cut(s) 914
BsuI GTATCC 1 cut(s) 662
BsuRI GGCC 6 cut(s) 151, 208, 212, 314, 613, 678
BtsCI GGATG 1 cut(s) 889
BveI ACCTGC 1 cut(s) 700
Cac8I GCNNGC 3 cut(s) 210, 308, 312
CaiI CAGNNNCTG 1 cut(s) 1112
CfoI GCGC 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 206, 611
CviAII CATG 5 cut(s) 307, 442, 491, 527, 905
DdeI CTNAG 4 cut(s) 371, 585, 629, 914
DpnI GATC 3 cut(s) 463, 865, 1026
DpnII GATC 3 cut(s) 461, 863, 1024
DrdI GACNNNNNNGTC 1 cut(s) 839
DseDI GACNNNNNNGTC 1 cut(s) 839
EaeI YGGCCR 1 cut(s) 676
Eam1104I CTCTTC 5 cut(s) 30, 87, 118, 296, 723
EarI CTCTTC 5 cut(s) 30, 87, 118, 296, 723
Eco147I AGGCCT 1 cut(s) 151
Eco31I GGTCTC 1 cut(s) 181
Eco81I CCTNAGG 1 cut(s) 914
Eco88I CYCGRG 1 cut(s) 171
EcoNI CCTNNNNNAGG 1 cut(s) 917
EcoRII CCWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 783
Esp3I CGTCTC 1 cut(s) 351
FaeI CATG 5 cut(s) 310, 445, 494, 530, 908
FalI AAGNNNNNCTT 4 cut(s) 514, 546, 673, 705
FatI CATG 5 cut(s) 306, 441, 490, 526, 904
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 896
FseI GGCCGGCC 1 cut(s) 212
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 3 cut(s) 147, 515, 827
GlaI GCGC 1 cut(s) 220
GluI GCNGC 1 cut(s) 18
HaeIII GGCC 6 cut(s) 151, 208, 212, 314, 613, 678
HapII CCGG 3 cut(s) 204, 209, 252
HhaI GCGC 1 cut(s) 221
Hin1II CATG 5 cut(s) 310, 445, 494, 530, 908
Hin6I GCGC 1 cut(s) 219
HinP1I GCGC 1 cut(s) 219
HincII GTYRAC 2 cut(s) 595, 1056
HindII GTYRAC 2 cut(s) 595, 1056
HinfI GANTC 3 cut(s) 200, 421, 1097
HpaII CCGG 3 cut(s) 204, 209, 252
Hpy166II GTNNAC 2 cut(s) 595, 1056
Hpy188I TCNGA 4 cut(s) 374, 394, 868, 1024
Hpy188III TCNNGA 5 cut(s) 34, 224, 534, 1031, 1094
Hpy8I GTNNAC 2 cut(s) 595, 1056
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 3 cut(s) 351, 399, 806
HpyCH4III ACNGT 2 cut(s) 469, 1060
HpyCH4IV ACGT 1 cut(s) 834
HpyF10VI GCNNNNNNNGC 3 cut(s) 218, 610, 893
HpyF3I CTNAG 4 cut(s) 371, 585, 629, 914
HpySE526I ACGT 1 cut(s) 834
Hsp92II CATG 5 cut(s) 310, 445, 494, 530, 908
HspAI GCGC 1 cut(s) 219
KroI GCCGGC 1 cut(s) 208
KroNI GCCGGC 1 cut(s) 210
Kzo9I GATC 3 cut(s) 461, 863, 1024
LguI GCTCTTC 2 cut(s) 118, 296
LmnI GCTCC 3 cut(s) 434, 487, 798
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 2 cut(s) 874, 1050
MaeI CTAG 3 cut(s) 147, 515, 827
MaeII ACGT 1 cut(s) 834
MaeIII GTNAC 2 cut(s) 437, 931
MalI GATC 3 cut(s) 463, 865, 1026
MboI GATC 3 cut(s) 461, 863, 1024
MfeI CAATTG 1 cut(s) 180
MhlI GDGCHC 1 cut(s) 981
MlsI TGGCCA 1 cut(s) 678
MluCI AATT 7 cut(s) 125, 180, 295, 358, 837, 870, 968
MluNI TGGCCA 1 cut(s) 678
MmeI TCCRAC 1 cut(s) 787
Mox20I TGGCCA 1 cut(s) 678
Mph1103I ATGCAT 1 cut(s) 783
MroNI GCCGGC 1 cut(s) 208
MroXI GAANNNNTTC 1 cut(s) 194
MscI TGGCCA 1 cut(s) 678
MseI TTAA 4 cut(s) 267, 323, 477, 965
Msp20I TGGCCA 1 cut(s) 678
MspA1I CMGCKG 1 cut(s) 589
MspI CCGG 3 cut(s) 204, 209, 252
MspR9I CCNGG 3 cut(s) 205, 253, 433
MunI CAATTG 1 cut(s) 180
Mva1269I GAATGC 1 cut(s) 543
MvaI CCWGG 1 cut(s) 433
MwoI GCNNNNNNNGC 3 cut(s) 218, 610, 893
NaeI GCCGGC 1 cut(s) 210
NciI CCSGG 2 cut(s) 205, 253
NdeII GATC 3 cut(s) 461, 863, 1024
NgoMIV GCCGGC 1 cut(s) 208
NlaIII CATG 5 cut(s) 310, 445, 494, 530, 908
NmeAIII GCCGAG 1 cut(s) 340
NsiI ATGCAT 1 cut(s) 783
NspI RCATGY 2 cut(s) 310, 530
NspV TTCGAA 1 cut(s) 198
PaeI GCATGC 1 cut(s) 310
PceI AGGCCT 1 cut(s) 151
PciSI GCTCTTC 2 cut(s) 118, 296
PctI GAATGC 1 cut(s) 543
PdiI GCCGGC 1 cut(s) 210
PdmI GAANNNNTTC 1 cut(s) 194
PfeI GAWTC 3 cut(s) 200, 421, 1097
PkrI GCNGC 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 431
PspGI CCWGG 1 cut(s) 431
PspPI GGNCC 2 cut(s) 206, 611
PstNI CAGNNNCTG 1 cut(s) 1112
PvuII CAGCTG 1 cut(s) 589
RigI GGCCGGCC 1 cut(s) 212
SapI GCTCTTC 2 cut(s) 118, 296
SaqAI TTAA 4 cut(s) 267, 323, 477, 965
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 3 cut(s) 461, 863, 1024
Sau96I GGNCC 2 cut(s) 206, 611
ScrFI CCNGG 3 cut(s) 205, 253, 433
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 2 cut(s) 874, 1050
SfcI CTRYAG 1 cut(s) 1059
SfuI TTCGAA 1 cut(s) 198
SmlI CTYRAG 2 cut(s) 32, 140
SmoI CTYRAG 2 cut(s) 32, 140
SphI GCATGC 1 cut(s) 310
Sse9I AATT 7 cut(s) 125, 180, 295, 358, 837, 870, 968
SseBI AGGCCT 1 cut(s) 151
SsiI CCGC 1 cut(s) 655
SspI AATATT 1 cut(s) 1069
SspMI CTAG 3 cut(s) 147, 515, 827
StuI AGGCCT 1 cut(s) 151
StyD4I CCNGG 3 cut(s) 203, 251, 431
TaaI ACNGT 2 cut(s) 469, 1060
TaiI ACGT 1 cut(s) 837
TaqI TCGA 2 cut(s) 198, 748
TasI AATT 7 cut(s) 125, 180, 295, 358, 837, 870, 968
TfiI GAWTC 3 cut(s) 200, 421, 1097
Tru1I TTAA 4 cut(s) 267, 323, 477, 965
Tru9I TTAA 4 cut(s) 267, 323, 477, 965
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 4 cut(s) 252, 507, 921, 977
TspGWI ACGGA 1 cut(s) 659
XagI CCTNNNNNAGG 1 cut(s) 917
XapI RAATTY 1 cut(s) 968
XceI RCATGY 2 cut(s) 310, 530
XmnI GAANNNNTTC 1 cut(s) 194
XspI CTAG 3 cut(s) 147, 515, 827
Zsp2I ATGCAT 1 cut(s) 783
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.