Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003295

Physical Location & Seq

Genomic Coordinates Forward (+)

10682029 .. 10682979

Gene Structure 951 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G28500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGAAGGTGATTGCTGCATTTCTCCTCGCGAAACTCGGTGGAAACGAGAATCCAACCTCAAATGATCTGAAGAAGATCTTGGAATCTGTTGGTGCTGAAATCGATGAAACGAAGATAGATCTGTTGTTTTCTCTCATCAAGGATCATGATGTGACGGAGCTTATTGCTGCTGGGAGAGAAAAGATGTCTGCTTTGTCTTCTGGTGGTCCAGCTGTTGCTATGGTGGCTGGAGGTGGTGGTGGTGGTGCTGCTTCGGCGGCTGAGCCGGTTGCTGAATCTAAGAAGAAGGTTGAAGAAGTGAAGGATGAATCTTCTGACGATGCAGGCATGATGGGTCTCTTTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0019538 GO:0022625 GO:0022626 GO:0032991 GO:0034641 GO:0034645 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

115

Amino Acids

11.74

Weight (kDa)

4.6

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 114	2.1e-19	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28500
fragaria_vesca	FvH4_3g01910 FvH4_3g12420 FvH4_3g19860 FvH4_3g19900 FvH4_4g01570 FvH4_4g12610
rosa_chinensis	RchiOBHm_Chr5g0001741 RchiOBHm_Chr5g0002781 RchiOBHm_Chr5g0010691 RchiOBHm_Chr5g0033571 RchiOBHm_Chr5g0043451
rosa_laevigata	RLG00000030964 RLG00000030966 RLG00000031059 RLG00000031771 RLG00000033486
rosa_multiflora	Rmu_co8374049.1_g000001 Rmu_sc0001768.1_g000002 Rmu_sc0003286.1_g000002 Rmu_sc0006103.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037440
rosa_rugosa	Rorug04G0392300 Rorug04G0392400 Rorug04G0392500.1 Rorug04G0399500 Rorug04G0451600 Rorug05G0140100
rosa_samantha	Rh4AG132900 Rh5BG025200 Rh5CG261300
rosa_wichuraiana	Rw0G000650 Rw0G022350 Rw5G001340 Rw5G002080 Rw5G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	29
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	293
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AluBI	AGCT	2 cut(s)	160, 212
AluI	AGCT	2 cut(s)	160, 212
Alw26I	GTCTC	1 cut(s)	341
AlwI	GGATC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	14, 167, 248
AspS9I	GGNCC	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	154, 235
BccI	CCATC	1 cut(s)	325
BcoDI	GTCTC	1 cut(s)	341
BglII	AGATCT	2 cut(s)	75, 118
BisI	GCNGC	4 cut(s)	15, 168, 249, 258
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	4 cut(s)	16, 169, 250, 259
Bme18I	GGWCC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	206
BmsI	GCATC	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	189
BpmI	CTGGAG	1 cut(s)	249
Bpu1102I	GCTNAGC	1 cut(s)	261
Bsa29I	ATCGAT	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	341
Bse118I	RCCGGY	1 cut(s)	265
BseCI	ATCGAT	1 cut(s)	102
BseGI	GGATG	1 cut(s)	310
BseMII	CTCAG	1 cut(s)	252
BseRI	GAGGAG	1 cut(s)	14
BseXI	GCAGC	2 cut(s)	154, 235
BseYI	CCCAGC	1 cut(s)	170
Bsh1236I	CGCG	1 cut(s)	29
BshVI	ATCGAT	1 cut(s)	102
BsiSI	CCGG	1 cut(s)	266
BsmAI	GTCTC	1 cut(s)	341
Bso31I	GGTCTC	1 cut(s)	341
Bsp143I	GATC	4 cut(s)	64, 75, 118, 142
Bsp1720I	GCTNAGC	1 cut(s)	261
Bsp68I	TCGCGA	1 cut(s)	29
BspACI	CCGC	1 cut(s)	257
BspCNI	CTCAG	1 cut(s)	253
BspDI	ATCGAT	1 cut(s)	102
BspFNI	CGCG	1 cut(s)	29
BspHI	TCATGA	1 cut(s)	145
BspPI	GGATC	1 cut(s)	150
BspTNI	GGTCTC	1 cut(s)	341
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssMI	GATC	4 cut(s)	64, 75, 118, 142
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	261, 279
BstF5I	GGATG	1 cut(s)	310
BstFNI	CGCG	1 cut(s)	29
BstKTI	GATC	4 cut(s)	67, 78, 121, 145
BstMAI	GTCTC	1 cut(s)	341
BstMBI	GATC	4 cut(s)	64, 75, 118, 142
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 254, 257
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	154, 235
BstV2I	GAAGAC	1 cut(s)	189
BstX2I	RGATCY	2 cut(s)	75, 118
BstYI	RGATCY	2 cut(s)	75, 118
Bsu15I	ATCGAT	1 cut(s)	102
BsuTUI	ATCGAT	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	310
BtuMI	TCGCGA	1 cut(s)	29
Cac8I	GCNNGC	1 cut(s)	325
CciI	TCATGA	1 cut(s)	145
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	206
ClaI	ATCGAT	1 cut(s)	102
CviAII	CATG	2 cut(s)	146, 328
CviJI	RGCY	5 cut(s)	160, 212, 227, 260, 265
CviKI_1	RGCY	5 cut(s)	160, 212, 227, 260, 265
DdeI	CTNAG	2 cut(s)	261, 279
DpnI	GATC	4 cut(s)	66, 77, 120, 144
DpnII	GATC	4 cut(s)	64, 75, 118, 142
Eco31I	GGTCTC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	206
Eco57I	CTGAAG	1 cut(s)	89
FaeI	CATG	2 cut(s)	149, 331
FaiI	YATR	3 cut(s)	147, 221, 329
FalI	AAGNNNNNCTT	2 cut(s)	62, 94
FatI	CATG	2 cut(s)	145, 327
Fnu4HI	GCNGC	4 cut(s)	15, 168, 249, 258
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	15, 168, 249, 258
GluI	GCNGC	4 cut(s)	15, 168, 249, 258
GsaI	CCCAGC	1 cut(s)	174
GsuI	CTGGAG	1 cut(s)	249
HapII	CCGG	1 cut(s)	266
Hin1II	CATG	2 cut(s)	149, 331
HinfI	GANTC	4 cut(s)	49, 83, 275, 308
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	69, 316
Hpy188III	TCNNGA	2 cut(s)	28, 146
HpyAV	CCTTC	2 cut(s)	280, 295
HpyCH4V	TGCA	2 cut(s)	17, 323
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 254, 257
HpyF3I	CTNAG	2 cut(s)	261, 279
Hsp92II	CATG	2 cut(s)	149, 331
Kzo9I	GATC	4 cut(s)	64, 75, 118, 142
LmnI	GCTCC	1 cut(s)	157
LpnPI	CCDG	6 cut(s)	156, 186, 213, 222, 279, 309
Lsp1109I	GCAGC	2 cut(s)	154, 235
LweI	GCATC	1 cut(s)	310
MaeIII	GTNAC	1 cut(s)	151
MalI	GATC	4 cut(s)	66, 77, 120, 144
MboI	GATC	4 cut(s)	64, 75, 118, 142
MboII	GAAGA	7 cut(s)	82, 85, 124, 189, 295, 303, 305
MflI	RGATCY	2 cut(s)	75, 118
MmeI	TCCRAC	1 cut(s)	77
MnlI	CCTC	3 cut(s)	35, 67, 224
MspA1I	CMGCKG	1 cut(s)	212
MspI	CCGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	224, 254, 257
NdeII	GATC	4 cut(s)	64, 75, 118, 142
NlaIII	CATG	2 cut(s)	149, 331
NmuCI	GTSAC	1 cut(s)	151
NruI	TCGCGA	1 cut(s)	29
PagI	TCATGA	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PfeI	GAWTC	4 cut(s)	49, 83, 275, 308
PkrI	GCNGC	4 cut(s)	16, 169, 250, 259
PspFI	CCCAGC	1 cut(s)	170
PspPI	GGNCC	1 cut(s)	206
PsuI	RGATCY	2 cut(s)	75, 118
PvuII	CAGCTG	1 cut(s)	212
RruI	TCGCGA	1 cut(s)	29
SatI	GCNGC	4 cut(s)	15, 168, 249, 258
Sau3AI	GATC	4 cut(s)	64, 75, 118, 142
Sau96I	GGNCC	1 cut(s)	206
SetI	ASST	6 cut(s)	9, 59, 162, 214, 235, 291
SfaNI	GCATC	1 cut(s)	310
SinI	GGWCC	1 cut(s)	206
SsiI	CCGC	1 cut(s)	257
TaqI	TCGA	1 cut(s)	102
TauI	GCSGC	1 cut(s)	260
TfiI	GAWTC	4 cut(s)	49, 83, 275, 308
TseFI	GTSAC	1 cut(s)	151
TseI	GCWGC	3 cut(s)	14, 167, 248
Tsp45I	GTSAC	1 cut(s)	151
TspDTI	ATGAA	3 cut(s)	17, 120, 321
TspGWI	ACGGA	1 cut(s)	170
VpaK11BI	GGWCC	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.