Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003295

Physical Location & Seq

Genomic Coordinates Reverse (-)

28947977 .. 28949260

Gene Structure 1284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG132900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGTCTGCAGCTGCTGAGCAGATGGAGAAGGTACAAGAGAAGGAAGAGTCCAATAGTGTACTAATGGATTTAGATTCTAAGAGTCAAGCATTAAATGATCGGATAACTGCGCTCCCGGATTTACTTCGTACCAGTATAGTTGATTTTCTTGGACTGAAATATGTGAAATGCGCTGTCAGGAATGGCGCTTTGTCGAAACATTGGAAAGATCTTTGGATTTTTACTCCCAATGTCAACTTCTCTGATAATGGTTTCTGCTCAGCTGCTGATTTCATAGCATATGTGGATCAGGCACTTTTAAATTGCTGCTCGGTTCCCGTCAAGAAATGTGTTTTTCATATCATTGATTTGAACCCGTGTGATCTTTGGCATCGGCTTAATGAATGGTTTAGCATATTGGATAGCTGTCCTGAGTCATACATCGATTTTTCTAACTGCCATCTTCTGGAACATTTAACTGTTGAGGGAAACCTTGAACATCATCAATTTGACATCTGCATCTCCCTCTCTGAACTGAAGACTTTAACGATAGATCTAATGACTCATTATCAGTGCTTTGCGAAGCCTCACACGATTCTTATTGAAGCCCCAAAGCTTGATATCACTGAGTATGTTTTGTCAAATTACACCTTTGAGAACACAGAATCTGTGGTTGAAGCCAATATTAAGGTCATTCACCATCTCAATGAAGACGATGACTCTTTTAGTAGTATAAGCAAGTTTCTAGCAGGAATTTTTGTTGTCAAATGTCTTGGTCTTTCATCTCATTTTCCAAAGGCTTGTCATTTTGCTACTTTCAAGGAGTTGCACAAGTTAACACTTTTTGTTTATGAATACTCAAATGATTGGAGTACACTAATAAAAATCATTGAGACACATAAGGCGGAATGCCTTGCATTGGAGCAGGGTCATCCATATGAATACGAGCTCCCTCCAGCTAAAAAGCAAATTGATGAGAGATGGAGTGCCCCAGCATCTGTGCCTGTGTCTGTTTTGTTGTGCTTGAAGACCATACTCGTGAAGGGAGTCGGCAATTCTTTTCGTACAAGTATATTGTCTTATGATGATGTATATGCAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBD LRR_2

Protein Analysis

360

Amino Acids

40.94

Weight (kDa)

5.34

Isoelectric Point (pI)

39.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28500
fragaria_vesca	FvH4_3g01910 FvH4_3g12420 FvH4_3g19860 FvH4_3g19900 FvH4_4g01570 FvH4_4g12610
rosa_chinensis	RchiOBHm_Chr5g0001741 RchiOBHm_Chr5g0002781 RchiOBHm_Chr5g0010691 RchiOBHm_Chr5g0033571 RchiOBHm_Chr5g0043451
rosa_laevigata	RLG00000030964 RLG00000030966 RLG00000031059 RLG00000031771 RLG00000033486
rosa_multiflora	Rmu_co8374049.1_g000001 Rmu_sc0001768.1_g000002 Rmu_sc0003286.1_g000002 Rmu_sc0006103.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037440
rosa_rugosa	Rorug04G0392300 Rorug04G0392400 Rorug04G0392500.1 Rorug04G0399500 Rorug04G0451600 Rorug05G0140100
rosa_samantha	Rh4AG132900 Rh5BG025200 Rh5CG261300
rosa_wichuraiana	Rw0G000650 Rw0G022350 Rw5G001340 Rw5G002080 Rw5G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	445
AciI	CCGC	1 cut(s)	884
AclWI	GGATC	1 cut(s)	294
AcsI	RAATTY	1 cut(s)	732
AcuI	CTGAAG	1 cut(s)	536
AfaI	GTAC	5 cut(s)	33, 60, 130, 853, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	445, 898
AgsI	TTSAA	6 cut(s)	352, 476, 584, 656, 799, 1006
AjuI	GAANNNNNNNTTGG	2 cut(s)	221, 253
AluBI	AGCT	6 cut(s)	11, 263, 405, 595, 928, 938
AluI	AGCT	6 cut(s)	11, 263, 405, 595, 928, 938
Alw21I	GWGCWC	1 cut(s)	930
Alw26I	GTCTC	1 cut(s)	866
AlwI	GGATC	1 cut(s)	294
AlwNI	CAGNNNCTG	4 cut(s)	14, 266, 647, 977
ApeKI	GCWGC	4 cut(s)	8, 11, 263, 306
ApoI	RAATTY	1 cut(s)	732
AspLEI	GCGC	3 cut(s)	112, 173, 188
AsuC2I	CCSGG	1 cut(s)	116
AsuHPI	GGTGA	1 cut(s)	668
BaeGI	GKGCMC	1 cut(s)	970
BanII	GRGCYC	1 cut(s)	930
BauI	CACGAG	1 cut(s)	1016
BbsI	GAAGAC	3 cut(s)	524, 696, 1013
Bbv12I	GWGCWC	1 cut(s)	930
BbvI	GCAGC	3 cut(s)	20, 250, 293
BccI	CCATC	4 cut(s)	16, 447, 687, 954
BcnI	CCSGG	1 cut(s)	116
BcoDI	GTCTC	1 cut(s)	866
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	1 cut(s)	6
BfoI	RGCGCY	1 cut(s)	189
BglII	AGATCT	2 cut(s)	208, 532
BisI	GCNGC	4 cut(s)	9, 12, 264, 307
BlpI	GCTNAGC	2 cut(s)	15, 259
BlsI	GCNGC	4 cut(s)	10, 13, 265, 308
Bme1390I	CCNGG	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	315
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	3 cut(s)	379, 507, 983
BpiI	GAAGAC	3 cut(s)	524, 696, 1013
BpmI	CTGGAG	1 cut(s)	918
Bpu1102I	GCTNAGC	2 cut(s)	15, 259
BpuMI	CCSGG	1 cut(s)	116
Bsa29I	ATCGAT	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	445, 898
Bse1I	ACTGG	1 cut(s)	132
BseCI	ATCGAT	1 cut(s)	423
BseGI	GGATG	1 cut(s)	910
BseLI	CCNNNNNNNGG	2 cut(s)	445, 898
BseMII	CTCAG	4 cut(s)	6, 273, 402, 597
BseNI	ACTGG	1 cut(s)	132
BseSI	GKGCMC	1 cut(s)	970
BseXI	GCAGC	3 cut(s)	20, 250, 293
BseYI	CCCAGC	1 cut(s)	970
BshVI	ATCGAT	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	930
BsiSI	CCGG	1 cut(s)	116
BslI	CCNNNNNNNGG	2 cut(s)	445, 898
BsmAI	GTCTC	1 cut(s)	866
BsmI	GAATGC	1 cut(s)	893
Bsp1286I	GDGCHC	2 cut(s)	930, 970
Bsp143I	GATC	5 cut(s)	97, 208, 286, 361, 532
Bsp1720I	GCTNAGC	2 cut(s)	15, 259
BspACI	CCGC	1 cut(s)	884
BspCNI	CTCAG	4 cut(s)	7, 272, 403, 598
BspDI	ATCGAT	1 cut(s)	423
BspLI	GGNNCC	1 cut(s)	315
BspMAI	CTGCAG	1 cut(s)	10
BspPI	GGATC	1 cut(s)	294
BsrI	ACTGG	1 cut(s)	132
BssMI	GATC	5 cut(s)	97, 208, 286, 361, 532
BssSI	CACGAG	1 cut(s)	1016
Bst2BI	CACGAG	1 cut(s)	1016
Bst4CI	ACNGT	1 cut(s)	460
Bst6I	CTCTTC	1 cut(s)	39
BstDEI	CTNAG	5 cut(s)	15, 78, 259, 411, 606
BstF5I	GGATG	1 cut(s)	910
BstH2I	RGCGCY	1 cut(s)	189
BstHHI	GCGC	3 cut(s)	112, 173, 188
BstKTI	GATC	5 cut(s)	100, 211, 289, 364, 535
BstMAI	GTCTC	1 cut(s)	866
BstMBI	GATC	5 cut(s)	97, 208, 286, 361, 532
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	1 cut(s)	6
BstSLI	GKGCMC	1 cut(s)	970
BstV1I	GCAGC	3 cut(s)	20, 250, 293
BstV2I	GAAGAC	3 cut(s)	524, 696, 1013
BstX2I	RGATCY	2 cut(s)	208, 532
BstYI	RGATCY	2 cut(s)	208, 532
Bsu15I	ATCGAT	1 cut(s)	423
BsuTUI	ATCGAT	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	910
BtsIMutI	CAGTG	2 cut(s)	557, 603
CaiI	CAGNNNCTG	4 cut(s)	14, 266, 647, 977
CfoI	GCGC	3 cut(s)	112, 173, 188
ClaI	ATCGAT	1 cut(s)	423
Csp6I	GTAC	5 cut(s)	32, 59, 129, 852, 1044
CviQI	GTAC	5 cut(s)	32, 59, 129, 852, 1044
DdeI	CTNAG	5 cut(s)	15, 78, 259, 411, 606
DpnI	GATC	5 cut(s)	99, 210, 288, 363, 534
DpnII	GATC	5 cut(s)	97, 208, 286, 361, 532
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
EciI	GGCGGA	1 cut(s)	899
Ecl136II	GAGCTC	1 cut(s)	928
Eco24I	GRGCYC	1 cut(s)	930
Eco32I	GATATC	1 cut(s)	601
Eco53kI	GAGCTC	1 cut(s)	928
Eco57I	CTGAAG	1 cut(s)	536
EcoICRI	GAGCTC	1 cut(s)	928
EcoRV	GATATC	1 cut(s)	601
EcoT38I	GRGCYC	1 cut(s)	930
FauNDI	CATATG	2 cut(s)	280, 916
Fnu4HI	GCNGC	4 cut(s)	9, 12, 264, 307
FokI	GGATG	1 cut(s)	897
FriOI	GRGCYC	1 cut(s)	930
Fsp4HI	GCNGC	4 cut(s)	9, 12, 264, 307
FspBI	CTAG	1 cut(s)	725
GlaI	GCGC	3 cut(s)	111, 172, 187
GluI	GCNGC	4 cut(s)	9, 12, 264, 307
GsaI	CCCAGC	1 cut(s)	974
GsuI	CTGGAG	1 cut(s)	918
HaeII	RGCGCY	1 cut(s)	189
HapII	CCGG	1 cut(s)	116
HhaI	GCGC	3 cut(s)	112, 173, 188
Hin6I	GCGC	3 cut(s)	110, 171, 186
HinP1I	GCGC	3 cut(s)	110, 171, 186
HincII	GTYRAC	2 cut(s)	235, 816
HindII	GTYRAC	2 cut(s)	235, 816
HindIII	AAGCTT	1 cut(s)	593
HinfI	GANTC	9 cut(s)	47, 74, 82, 413, 541, 574, 644, 698, 1026
HpaI	GTTAAC	1 cut(s)	816
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	1 cut(s)	668
Hpy166II	GTNNAC	4 cut(s)	59, 235, 816, 854
Hpy188I	TCNGA	3 cut(s)	102, 244, 511
Hpy188III	TCNNGA	5 cut(s)	178, 322, 410, 446, 1018
Hpy8I	GTNNAC	4 cut(s)	59, 235, 816, 854
HpyAV	CCTTC	3 cut(s)	22, 34, 1015
HpyCH4III	ACNGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	8, 498, 808, 896, 1076
HpyF3I	CTNAG	5 cut(s)	15, 78, 259, 411, 606
HspAI	GCGC	3 cut(s)	110, 171, 186
KspAI	GTTAAC	1 cut(s)	816
Kzo9I	GATC	5 cut(s)	97, 208, 286, 361, 532
LmnI	GCTCC	3 cut(s)	117, 901, 933
Lsp1109I	GCAGC	3 cut(s)	20, 250, 293
LweI	GCATC	3 cut(s)	379, 507, 983
MaeI	CTAG	1 cut(s)	725
MalI	GATC	5 cut(s)	99, 210, 288, 363, 534
MboI	GATC	5 cut(s)	97, 208, 286, 361, 532
MboII	GAAGA	5 cut(s)	56, 434, 529, 701, 1018
MflI	RGATCY	2 cut(s)	208, 532
MhlI	GDGCHC	2 cut(s)	930, 970
MluCI	AATT	6 cut(s)	301, 485, 622, 732, 948, 1033
MlyI	GAGTC	6 cut(s)	56, 91, 422, 535, 692, 1035
MnlI	CCTC	4 cut(s)	457, 515, 576, 942
MseI	TTAA	7 cut(s)	92, 299, 378, 455, 524, 666, 815
MslI	CAYNNNNRTG	3 cut(s)	684, 915, 1016
MspA1I	CMGCKG	2 cut(s)	11, 263
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	116
Mva1269I	GAATGC	1 cut(s)	893
NciI	CCSGG	1 cut(s)	116
NdeI	CATATG	2 cut(s)	280, 916
NdeII	GATC	5 cut(s)	97, 208, 286, 361, 532
NlaIV	GGNNCC	1 cut(s)	315
PctI	GAATGC	1 cut(s)	893
PfeI	GAWTC	3 cut(s)	74, 574, 644
PflMI	CCANNNNNTGG	1 cut(s)	445
PfoI	TCCNGGA	1 cut(s)	114
PkrI	GCNGC	4 cut(s)	10, 13, 265, 308
PleI	GAGTC	6 cut(s)	55, 90, 421, 535, 692, 1034
PpsI	GAGTC	6 cut(s)	55, 90, 421, 535, 692, 1034
Psp124BI	GAGCTC	1 cut(s)	930
PspFI	CCCAGC	1 cut(s)	970
PspN4I	GGNNCC	1 cut(s)	315
PstI	CTGCAG	1 cut(s)	10
PstNI	CAGNNNCTG	4 cut(s)	14, 266, 647, 977
PsuI	RGATCY	2 cut(s)	208, 532
PvuII	CAGCTG	2 cut(s)	11, 263
RsaI	GTAC	5 cut(s)	33, 60, 130, 853, 1045
RsaNI	GTAC	5 cut(s)	32, 59, 129, 852, 1044
RseI	CAYNNNNRTG	3 cut(s)	684, 915, 1016
SacI	GAGCTC	1 cut(s)	930
SaqAI	TTAA	7 cut(s)	92, 299, 378, 455, 524, 666, 815
SatI	GCNGC	4 cut(s)	9, 12, 264, 307
Sau3AI	GATC	5 cut(s)	97, 208, 286, 361, 532
SchI	GAGTC	6 cut(s)	56, 91, 422, 535, 692, 1035
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	2 cut(s)	930, 970
SfaNI	GCATC	3 cut(s)	379, 507, 983
SfcI	CTRYAG	1 cut(s)	6
SmiMI	CAYNNNNRTG	3 cut(s)	684, 915, 1016
Sse9I	AATT	6 cut(s)	301, 485, 622, 732, 948, 1033
SsiI	CCGC	1 cut(s)	884
SspI	AATATT	1 cut(s)	664
SspMI	CTAG	1 cut(s)	725
SstI	GAGCTC	1 cut(s)	930
StyD4I	CCNGG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	460
TaqI	TCGA	2 cut(s)	194, 423
TasI	AATT	6 cut(s)	301, 485, 622, 732, 948, 1033
TatI	WGTACW	2 cut(s)	58, 851
TfiI	GAWTC	3 cut(s)	74, 574, 644
Tru1I	TTAA	7 cut(s)	92, 299, 378, 455, 524, 666, 815
Tru9I	TTAA	7 cut(s)	92, 299, 378, 455, 524, 666, 815
TscAI	CASTG	2 cut(s)	557, 610
TseI	GCWGC	4 cut(s)	8, 11, 263, 306
TspDTI	ATGAA	7 cut(s)	262, 326, 396, 702, 750, 846, 933
TspRI	CASTG	2 cut(s)	557, 610
Van91I	CCANNNNNTGG	1 cut(s)	445
XapI	RAATTY	1 cut(s)	732
XspI	CTAG	1 cut(s)	725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.