Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003295

Physical Location & Seq

Genomic Coordinates Forward (+)

975062 .. 976231

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGTGGTTGCTGCTTATATGCTCGCCGTTTTGGGTGGCAACGCCAGCCCCTCCGCCGATGATGTTAAGAAAATTCTCGGATCAGTTGGAGCTGAAGCCGATGACAATAAGATCGAGTTGCTCTTGTCCCAACTGAAAGGAAAAGATATCACCGATCTAGTTGCTTCCGGAAAAGAGAAGTTGGCATCTGTGCCTTCCGGCGGCTCAGCTGCCGTTGCAGCACCTGCAGCTGGTACTGACGCTGCAGCTCCTGGTCCTGTTGAGGAGAAGAAGGAAGAGAAGGTTGAAGAGGAGGAAGAGGATGATGAGTTCATTTCAAATATCTTTGACGAGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

114

Amino Acids

11.6

Weight (kDa)

4.24

Isoelectric Point (pI)

56.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 103	4.1e-20	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28500
fragaria_vesca	FvH4_3g01910 FvH4_3g12420 FvH4_3g19860 FvH4_3g19900 FvH4_4g01570 FvH4_4g12610
rosa_chinensis	RchiOBHm_Chr5g0001741 RchiOBHm_Chr5g0002781 RchiOBHm_Chr5g0010691 RchiOBHm_Chr5g0033571 RchiOBHm_Chr5g0043451
rosa_laevigata	RLG00000030964 RLG00000030966 RLG00000031059 RLG00000031771 RLG00000033486
rosa_multiflora	Rmu_co8374049.1_g000001 Rmu_sc0001768.1_g000002 Rmu_sc0003286.1_g000002 Rmu_sc0006103.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037440
rosa_rugosa	Rorug04G0392300 Rorug04G0392400 Rorug04G0392500.1 Rorug04G0399500 Rorug04G0451600 Rorug05G0140100
rosa_samantha	Rh4AG132900 Rh5BG025200 Rh5CG261300
rosa_wichuraiana	Rw0G000650 Rw0G022350 Rw5G001340 Rw5G002080 Rw5G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	2 cut(s)	57, 204
AclWI	GGATC	1 cut(s)	91
AcsI	RAATTY	1 cut(s)	75
AcuI	CTGAAG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	203, 233
AgsI	TTSAA	2 cut(s)	290, 321
AjnI	CCWGG	1 cut(s)	253
AloI	GAACNNNNNNTCC	2 cut(s)	296, 328
AluBI	AGCT	4 cut(s)	95, 212, 233, 251
AluI	AGCT	4 cut(s)	95, 212, 233, 251
AlwI	GGATC	1 cut(s)	91
AlwNI	CAGNNNCTG	2 cut(s)	227, 254
Aor13HI	TCCGGA	1 cut(s)	170
ApeKI	GCWGC	6 cut(s)	14, 212, 221, 230, 245, 248
ApoI	RAATTY	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	257
BbvI	GCAGC	5 cut(s)	199, 232, 233, 242, 260
BceAI	ACGGC	2 cut(s)	14, 200
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BciT130I	CCWGG	1 cut(s)	255
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	2 cut(s)	228, 246
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	7 cut(s)	15, 205, 213, 222, 231, 246, 249
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	7 cut(s)	16, 206, 214, 223, 232, 247, 250
Bme1390I	CCNGG	1 cut(s)	255
Bme18I	GGWCC	1 cut(s)	257
BmgT120I	GGNCC	1 cut(s)	257
BmrFI	CCNGG	1 cut(s)	255
BmsI	GCATC	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	208
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 233
BseAI	TCCGGA	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	255
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	2 cut(s)	203, 233
BseMII	CTCAG	1 cut(s)	222
BseRI	GAGGAG	2 cut(s)	281, 308
BseXI	GCAGC	5 cut(s)	199, 232, 233, 242, 260
BsiSI	CCGG	2 cut(s)	171, 201
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	2 cut(s)	203, 233
BsmFI	GGGAC	1 cut(s)	115
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	3 cut(s)	83, 114, 157
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	2 cut(s)	57, 204
BspCNI	CTCAG	1 cut(s)	221
BspEI	TCCGGA	1 cut(s)	170
BspMAI	CTGCAG	2 cut(s)	232, 250
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	91
BssMI	GATC	3 cut(s)	83, 114, 157
Bst2UI	CCWGG	1 cut(s)	255
Bst6I	CTCTTC	3 cut(s)	273, 285, 294
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	27, 49
BstDEI	CTNAG	1 cut(s)	208
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	3 cut(s)	86, 117, 160
BstMBI	GATC	3 cut(s)	83, 114, 157
BstMWI	GCNNNNNNNGC	5 cut(s)	48, 218, 221, 227, 230
BstNI	CCWGG	1 cut(s)	255
BstSCI	CCNGG	1 cut(s)	253
BstSFI	CTRYAG	2 cut(s)	228, 246
BstV1I	GCAGC	5 cut(s)	199, 232, 233, 242, 260
BtsCI	GGATG	1 cut(s)	310
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	2 cut(s)	27, 49
CaiI	CAGNNNCTG	2 cut(s)	227, 254
Cfr13I	GGNCC	1 cut(s)	257
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	237
CviJI	RGCY	7 cut(s)	51, 95, 101, 207, 212, 233, 251
CviKI_1	RGCY	7 cut(s)	51, 95, 101, 207, 212, 233, 251
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	208
DpnI	GATC	3 cut(s)	85, 116, 159
DpnII	GATC	3 cut(s)	83, 114, 157
Eam1104I	CTCTTC	3 cut(s)	273, 285, 294
EarI	CTCTTC	3 cut(s)	273, 285, 294
EciI	GGCGGA	1 cut(s)	46
Eco32I	GATATC	1 cut(s)	151
Eco47I	GGWCC	1 cut(s)	257
Eco57I	CTGAAG	1 cut(s)	117
EcoRII	CCWGG	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	151
FaiI	YATR	2 cut(s)	21, 23
FaqI	GGGAC	1 cut(s)	115
Fnu4HI	GCNGC	7 cut(s)	15, 205, 213, 222, 231, 246, 249
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	7 cut(s)	15, 205, 213, 222, 231, 246, 249
FspBI	CTAG	1 cut(s)	161
GluI	GCNGC	7 cut(s)	15, 205, 213, 222, 231, 246, 249
HapII	CCGG	2 cut(s)	171, 201
HgaI	GACGC	1 cut(s)	251
HpaII	CCGG	2 cut(s)	171, 201
HphI	GGTGA	1 cut(s)	145
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	3 cut(s)	207, 268, 277
HpyCH4V	TGCA	3 cut(s)	221, 230, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	48, 218, 221, 227, 230
HpyF3I	CTNAG	1 cut(s)	208
Kpn2I	TCCGGA	1 cut(s)	170
Kzo9I	GATC	3 cut(s)	83, 114, 157
LmnI	GCTCC	2 cut(s)	92, 256
LpnPI	CCDG	8 cut(s)	61, 184, 214, 219, 240, 240, 267, 273
Lsp1109I	GCAGC	5 cut(s)	199, 232, 233, 242, 260
LweI	GCATC	1 cut(s)	197
MaeI	CTAG	1 cut(s)	161
MalI	GATC	3 cut(s)	85, 116, 159
MboI	GATC	3 cut(s)	83, 114, 157
MboII	GAAGA	4 cut(s)	283, 290, 302, 311
MluCI	AATT	1 cut(s)	75
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	64, 259, 286, 289, 295, 328
MroI	TCCGGA	1 cut(s)	170
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	2 cut(s)	212, 233
MspI	CCGG	2 cut(s)	171, 201
MspR9I	CCNGG	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	5 cut(s)	48, 218, 221, 227, 230
NdeII	GATC	3 cut(s)	83, 114, 157
PaqCI	CACCTGC	1 cut(s)	235
PkrI	GCNGC	7 cut(s)	16, 206, 214, 223, 232, 247, 250
Psp6I	CCWGG	1 cut(s)	253
PspGI	CCWGG	1 cut(s)	253
PspPI	GGNCC	1 cut(s)	257
PstI	CTGCAG	2 cut(s)	232, 250
PstNI	CAGNNNCTG	2 cut(s)	227, 254
PvuII	CAGCTG	2 cut(s)	212, 233
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	7 cut(s)	15, 205, 213, 222, 231, 246, 249
Sau3AI	GATC	3 cut(s)	83, 114, 157
Sau96I	GGNCC	1 cut(s)	257
ScrFI	CCNGG	1 cut(s)	255
SetI	ASST	7 cut(s)	9, 97, 214, 229, 235, 253, 288
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	2 cut(s)	228, 246
SinI	GGWCC	1 cut(s)	257
Sse9I	AATT	1 cut(s)	75
SsiI	CCGC	2 cut(s)	57, 204
SspMI	CTAG	1 cut(s)	161
StyD4I	CCNGG	1 cut(s)	253
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	75
TauI	GCSGC	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseI	GCWGC	6 cut(s)	14, 212, 221, 230, 245, 248
TspDTI	ATGAA	2 cut(s)	17, 304
VpaK11BI	GGWCC	1 cut(s)	257
XapI	RAATTY	1 cut(s)	75
XspI	CTAG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.