RchiOBHm_Chr5g0001741

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003295
Physical Location & Seq
Reverse (-)
943624 .. 944621
998 bp
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UTR
Exon/CDS
Intron
PRQ28315

Sequence Viewer

Length: 336 bp
ATGAAGGTGGTTGCTGCTTATATGCTGGCTGTTTTGGGAGGGAACGCCAGTCCCTCTGCGGATGATTTGAAGAAAATTCTTGGATCAGTTGGAGCTGAGGCTGATGACGATAGGATTGAGTTGATGTTGTCCCAAGTTAAAGGTAAGTGTATCACCGAGCTAGTTGCATGCGGAAGAGAGAAGATGGCATCTGTTCCTTCTAGTGGCGATGCAGTTGATGTTGCCACAATTGCAACAGGTGACGTTGCTCCTTCTGTTGAGCACAAGGAAGAGAAGGTTGAAGAGGATGAAGAGTCCGATAATGAAATTTTCACCCTCTTTGACGATGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

111

Amino Acids

11.72

Weight (kDa)

4.16

Isoelectric Point (pI)

50.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 107 3.4e-13 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 59, 171
AclWI GGATC 1 cut(s) 91
AcsI RAATTY 2 cut(s) 75, 306
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 2 cut(s) 70, 281
AluBI AGCT 2 cut(s) 95, 160
AluI AGCT 2 cut(s) 95, 160
Alw21I GWGCWC 1 cut(s) 264
AlwI GGATC 1 cut(s) 91
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 2 cut(s) 75, 306
AsuHPI GGTGA 3 cut(s) 145, 251, 304
Bbv12I GWGCWC 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 96
BccI CCATC 1 cut(s) 178
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BfaI CTAG 2 cut(s) 161, 201
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
BmsI GCATC 2 cut(s) 197, 199
Bpu10I CCTNAGC 1 cut(s) 96
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse1I ACTGG 1 cut(s) 48
BseGI GGATG 2 cut(s) 67, 292
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 264
BslFI GGGAC 2 cut(s) 36, 115
BslI CCNNNNNNNGG 1 cut(s) 203
BsmFI GGGAC 2 cut(s) 36, 115
Bsp1286I GDGCHC 1 cut(s) 264
Bsp143I GATC 1 cut(s) 83
BspACI CCGC 2 cut(s) 59, 171
BspCNI CTCAG 1 cut(s) 88
BspPI GGATC 1 cut(s) 91
BsrI ACTGG 1 cut(s) 48
BssMI GATC 1 cut(s) 83
Bst6I CTCTTC 4 cut(s) 169, 264, 276, 285
BstC8I GCNNGC 2 cut(s) 27, 169
BstDEI CTNAG 1 cut(s) 96
BstF5I GGATG 2 cut(s) 67, 292
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNSI RCATGY 1 cut(s) 171
BtgZI GCGATG 1 cut(s) 222
BtsCI GGATG 2 cut(s) 67, 292
Cac8I GCNNGC 2 cut(s) 27, 169
CviAII CATG 1 cut(s) 168
CviJI RGCY 4 cut(s) 29, 95, 101, 160
CviKI_1 RGCY 4 cut(s) 29, 95, 101, 160
DdeI CTNAG 1 cut(s) 96
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
Eam1104I CTCTTC 4 cut(s) 169, 264, 276, 285
EarI CTCTTC 4 cut(s) 169, 264, 276, 285
FaeI CATG 1 cut(s) 171
FaiI YATR 4 cut(s) 21, 23, 169, 334
FaqI GGGAC 2 cut(s) 36, 115
FatI CATG 1 cut(s) 167
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 2 cut(s) 74, 299
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 2 cut(s) 161, 201
GluI GCNGC 1 cut(s) 15
Hin1II CATG 1 cut(s) 171
HinfI GANTC 1 cut(s) 293
HphI GGTGA 3 cut(s) 145, 251, 304
Hpy188I TCNGA 1 cut(s) 298
HpyAV CCTTC 3 cut(s) 207, 261, 268
HpyCH4IV ACGT 1 cut(s) 243
HpyCH4V TGCA 3 cut(s) 167, 212, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 96
HpySE526I ACGT 1 cut(s) 243
Hsp92II CATG 1 cut(s) 171
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 92, 253
LpnPI CCDG 3 cut(s) 11, 61, 222
LweI GCATC 2 cut(s) 197, 199
MaeI CTAG 2 cut(s) 161, 201
MaeII ACGT 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 239
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MboII GAAGA 6 cut(s) 82, 186, 193, 281, 293, 302
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 264
MluCI AATT 3 cut(s) 75, 228, 306
MlyI GAGTC 1 cut(s) 302
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 5 cut(s) 32, 64, 91, 277, 326
MseI TTAA 1 cut(s) 138
MunI CAATTG 1 cut(s) 228
MwoI GCNNNNNNNGC 1 cut(s) 230
NdeII GATC 1 cut(s) 83
NlaIII CATG 1 cut(s) 171
NmuCI GTSAC 1 cut(s) 239
NspI RCATGY 1 cut(s) 171
PaeI GCATGC 1 cut(s) 171
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 1 cut(s) 83
SchI GAGTC 1 cut(s) 302
SduI GDGCHC 1 cut(s) 264
SetI ASST 7 cut(s) 9, 97, 145, 162, 241, 246, 279
SfaNI GCATC 2 cut(s) 197, 199
SphI GCATGC 1 cut(s) 171
Sse9I AATT 3 cut(s) 75, 228, 306
SsiI CCGC 2 cut(s) 59, 171
SspMI CTAG 2 cut(s) 161, 201
TaiI ACGT 1 cut(s) 246
TasI AATT 3 cut(s) 75, 228, 306
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TseFI GTSAC 1 cut(s) 239
TseI GCWGC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 239
TspDTI ATGAA 3 cut(s) 17, 303, 318
XapI RAATTY 2 cut(s) 75, 306
XceI RCATGY 1 cut(s) 171
XspI CTAG 2 cut(s) 161, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.