Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003286.1

Orthogroup ID

OG0003295

Physical Location & Seq

Genomic Coordinates Reverse (-)

6769 .. 7119

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003286.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgaaggtggttgctgcctatttgcttgctgttctgggagggaacaccagtccctctgcagatgatgtgaagaagattctcggatcggttggagccgatgccgatagcgataggatcgagttgctgttgtctcaattaaaaggaaaagatgtcgccgaggtggttgcctccggaagagagaagttggcatctgtgccttctggtggcgcagttgctcgtgtcgcacccgcagccggcaccgctggtgctgcagctactgctgctggcgagcagaagaaggaagagaaggttgaagaggaagaggaagaagatgatgcagatattggtggtctctttggcgatgacgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

116

Amino Acids

11.63

Weight (kDa)

4.3

Isoelectric Point (pI)

39.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28500
fragaria_vesca	FvH4_3g01910 FvH4_3g12420 FvH4_3g19860 FvH4_3g19900 FvH4_4g01570 FvH4_4g12610
rosa_chinensis	RchiOBHm_Chr5g0001741 RchiOBHm_Chr5g0002781 RchiOBHm_Chr5g0010691 RchiOBHm_Chr5g0033571 RchiOBHm_Chr5g0043451
rosa_laevigata	RLG00000030964 RLG00000030966 RLG00000031059 RLG00000031771 RLG00000033486
rosa_multiflora	Rmu_co8374049.1_g000001 Rmu_sc0001768.1_g000002 Rmu_sc0003286.1_g000002 Rmu_sc0006103.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037440
rosa_rugosa	Rorug04G0392300 Rorug04G0392400 Rorug04G0392500.1 Rorug04G0399500 Rorug04G0451600 Rorug05G0140100
rosa_samantha	Rh4AG132900 Rh5BG025200 Rh5CG261300
rosa_wichuraiana	Rw0G000650 Rw0G022350 Rw5G001340 Rw5G002080 Rw5G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	236
AccIII	TCCGGA	1 cut(s)	170
AciI	CCGC	2 cut(s)	228, 240
AclWI	GGATC	2 cut(s)	91, 122
AfiI	CCNNNNNNNGG	2 cut(s)	203, 233
AgsI	TTSAA	1 cut(s)	293
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw26I	GTCTC	2 cut(s)	135, 335
AlwI	GGATC	2 cut(s)	91, 122
AlwNI	CAGNNNCTG	1 cut(s)	257
Aor13HI	TCCGGA	1 cut(s)	170
ApeKI	GCWGC	5 cut(s)	14, 230, 248, 251, 260
AspLEI	GCGC	1 cut(s)	209
BanI	GGYRCC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	235, 242, 247, 263
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BcoDI	GTCTC	2 cut(s)	135, 335
BfmI	CTRYAG	2 cut(s)	57, 249
BisI	GCNGC	5 cut(s)	15, 231, 249, 252, 261
BlsI	GCNGC	5 cut(s)	16, 232, 250, 253, 262
BmiI	GGNNCC	2 cut(s)	94, 238
BmsI	GCATC	3 cut(s)	88, 197, 304
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	1 cut(s)	156
BsaWI	WCCGGW	1 cut(s)	170
Bsc4I	CCNNNNNNNGG	2 cut(s)	203, 233
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	203, 233
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	4 cut(s)	235, 242, 247, 263
BshNI	GGYRCC	1 cut(s)	236
BsiSI	CCGG	2 cut(s)	171, 234
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	203, 233
BsmAI	GTCTC	2 cut(s)	135, 335
BsmFI	GGGAC	1 cut(s)	36
Bso31I	GGTCTC	1 cut(s)	335
Bsp13I	TCCGGA	1 cut(s)	170
Bsp143I	GATC	2 cut(s)	83, 114
BspACI	CCGC	2 cut(s)	228, 240
BspEI	TCCGGA	1 cut(s)	170
BspLI	GGNNCC	2 cut(s)	94, 238
BspMAI	CTGCAG	2 cut(s)	61, 253
BspPI	GGATC	2 cut(s)	91, 122
BspT107I	GGYRCC	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	48
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	83, 114
BssSI	CACGAG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	216
Bst6I	CTCTTC	4 cut(s)	169, 276, 288, 294
BstAPI	GCANNNNNTGC	1 cut(s)	257
BstC8I	GCNNGC	4 cut(s)	27, 235, 265, 269
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	86, 117
BstMAI	GTCTC	2 cut(s)	135, 335
BstMBI	GATC	2 cut(s)	83, 114
BstMWI	GCNNNNNNNGC	6 cut(s)	221, 230, 239, 248, 257, 260
BstSFI	CTRYAG	2 cut(s)	57, 249
BstV1I	GCAGC	4 cut(s)	235, 242, 247, 263
Cac8I	GCNNGC	4 cut(s)	27, 235, 265, 269
CaiI	CAGNNNCTG	1 cut(s)	257
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	233
CviJI	RGCY	3 cut(s)	95, 233, 254
CviKI_1	RGCY	3 cut(s)	95, 233, 254
DpnI	GATC	2 cut(s)	85, 116
DpnII	GATC	2 cut(s)	83, 114
Eam1104I	CTCTTC	4 cut(s)	169, 276, 288, 294
EarI	CTCTTC	4 cut(s)	169, 276, 288, 294
Eco31I	GGTCTC	1 cut(s)	335
FaqI	GGGAC	1 cut(s)	36
FauI	CCCGC	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	15, 231, 249, 252, 261
Fsp4HI	GCNGC	5 cut(s)	15, 231, 249, 252, 261
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	5 cut(s)	15, 231, 249, 252, 261
HapII	CCGG	2 cut(s)	171, 234
HhaI	GCGC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	1 cut(s)	76
HpaII	CCGG	2 cut(s)	171, 234
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	171
HpyAV	CCTTC	3 cut(s)	207, 271, 280
HpyCH4V	TGCA	3 cut(s)	59, 251, 317
HpyF10VI	GCNNNNNNNGC	6 cut(s)	221, 230, 239, 248, 257, 260
HspAI	GCGC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	170
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	83, 114
LmnI	GCTCC	1 cut(s)	92
LpnPI	CCDG	7 cut(s)	20, 61, 184, 186, 228, 247, 249
Lsp1109I	GCAGC	4 cut(s)	235, 242, 247, 263
LweI	GCATC	3 cut(s)	88, 197, 304
MalI	GATC	2 cut(s)	85, 116
MboI	GATC	2 cut(s)	83, 114
MboII	GAAGA	9 cut(s)	82, 85, 186, 286, 293, 305, 311, 317, 320
MluCI	AATT	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	6 cut(s)	32, 64, 151, 178, 289, 295
MroI	TCCGGA	1 cut(s)	170
MroNI	GCCGGC	1 cut(s)	233
MseI	TTAA	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	2 cut(s)	171, 234
MwoI	GCNNNNNNNGC	6 cut(s)	221, 230, 239, 248, 257, 260
NaeI	GCCGGC	1 cut(s)	235
NdeII	GATC	2 cut(s)	83, 114
NgoMIV	GCCGGC	1 cut(s)	233
NlaIV	GGNNCC	2 cut(s)	94, 238
NmeAIII	GCCGAG	1 cut(s)	181
PdiI	GCCGGC	1 cut(s)	235
PfeI	GAWTC	1 cut(s)	76
PkrI	GCNGC	5 cut(s)	16, 232, 250, 253, 262
PspN4I	GGNNCC	2 cut(s)	94, 238
PstI	CTGCAG	2 cut(s)	61, 253
PstNI	CAGNNNCTG	1 cut(s)	257
SaqAI	TTAA	1 cut(s)	137
SatI	GCNGC	5 cut(s)	15, 231, 249, 252, 261
Sau3AI	GATC	2 cut(s)	83, 114
SetI	ASST	4 cut(s)	9, 162, 256, 291
SfaNI	GCATC	3 cut(s)	88, 197, 304
SfcI	CTRYAG	2 cut(s)	57, 249
Sse9I	AATT	1 cut(s)	134
SsiI	CCGC	2 cut(s)	228, 240
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	76
Tru1I	TTAA	1 cut(s)	137
Tru9I	TTAA	1 cut(s)	137
TseI	GCWGC	5 cut(s)	14, 230, 248, 251, 260
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.