FvH4_3g12420

translational elongation

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003295
Physical Location & Seq
Reverse (-)
7393602 .. 7394456
855 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12420.t1

Sequence Viewer

Length: 330 bp
ATGAAGGTGATTGCTGCTTACTTGCTCGCTCGATTGGGAGGGAACACCGATCCTTCTGCCGATGACCTGAAGAGAATTTGCGGAGCAGTTGGAGCTGAGATTGATGGAGACAGACTTGAGTTGTTCTTCTCCCAAGTCGATGGAAAAAATATCGATGAGCTAGTTGCATCCGGAAAAGAGAAGTTGGCACTTGTGCCTTCCAGCGATGACACTAGTGCTGCAGCTCCTCCTGCTGTTGTTGAGGAGACTAAGGAAGAGAAGGTTGAAGAAGAAGAAGAAGAAGAGGACGACTTTGATGGACCTTTCAGCCTCTTCGGCCCTGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

110

Amino Acids

11.66

Weight (kDa)

4.05

Isoelectric Point (pI)

47.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 18 - 105 1.1e-18 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 44
AcsI RAATTY 1 cut(s) 75
AcuI CTGAAG 1 cut(s) 89
AgsI TTSAA 1 cut(s) 266
AhlI ACTAGT 1 cut(s) 212
AluBI AGCT 3 cut(s) 95, 160, 224
AluI AGCT 3 cut(s) 95, 160, 224
Alw26I GTCTC 2 cut(s) 102, 239
AlwI GGATC 1 cut(s) 44
Aor13HI TCCGGA 1 cut(s) 170
AoxI GGCC 1 cut(s) 316
ApeKI GCWGC 3 cut(s) 14, 218, 221
ApoI RAATTY 1 cut(s) 75
AspS9I GGNCC 2 cut(s) 299, 317
AsuHPI GGTGA 1 cut(s) 19
AvaII GGWCC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 205, 233
BccI CCATC 3 cut(s) 98, 134, 290
BcgI CGANNNNNNTGC 2 cut(s) 38, 72
BcoDI GTCTC 2 cut(s) 102, 239
BcuI ACTAGT 1 cut(s) 212
BfaI CTAG 2 cut(s) 161, 213
BfmI CTRYAG 1 cut(s) 219
BglI GCCNNNNNGGC 1 cut(s) 315
BisI GCNGC 3 cut(s) 15, 219, 222
BlsI GCNGC 3 cut(s) 16, 220, 223
Bme18I GGWCC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 299, 317
BmsI GCATC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 137
Bsa29I ATCGAT 1 cut(s) 153
BsaWI WCCGGW 1 cut(s) 170
BseAI TCCGGA 1 cut(s) 170
BseCI ATCGAT 1 cut(s) 153
BseGI GGATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 87
BseRI GAGGAG 2 cut(s) 216, 257
BseXI GCAGC 2 cut(s) 205, 233
BshFI GGCC 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 153
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 102, 239
BsnI GGCC 1 cut(s) 318
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 1 cut(s) 49
BspACI CCGC 1 cut(s) 81
BspANI GGCC 1 cut(s) 318
BspCNI CTCAG 1 cut(s) 88
BspDI ATCGAT 1 cut(s) 153
BspEI TCCGGA 1 cut(s) 170
BspMAI CTGCAG 1 cut(s) 223
BspPI GGATC 1 cut(s) 44
BssMI GATC 1 cut(s) 49
Bst6I CTCTTC 4 cut(s) 65, 249, 276, 317
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 2 cut(s) 96, 249
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 102, 239
BstMBI GATC 1 cut(s) 49
BstMWI GCNNNNNNNGC 3 cut(s) 92, 230, 315
BstSFI CTRYAG 1 cut(s) 219
BstV1I GCAGC 2 cut(s) 205, 233
BstXI CCANNNNNNTGG 1 cut(s) 140
Bsu15I ATCGAT 1 cut(s) 153
BsuRI GGCC 1 cut(s) 318
BsuTUI ATCGAT 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 167
Cac8I GCNNGC 1 cut(s) 27
Cfr13I GGNCC 2 cut(s) 299, 317
ClaI ATCGAT 1 cut(s) 153
CviJI RGCY 5 cut(s) 95, 160, 224, 309, 318
CviKI_1 RGCY 5 cut(s) 95, 160, 224, 309, 318
DdeI CTNAG 2 cut(s) 96, 249
DpnI GATC 1 cut(s) 51
DpnII GATC 1 cut(s) 49
Eam1104I CTCTTC 4 cut(s) 65, 249, 276, 317
EarI CTCTTC 4 cut(s) 65, 249, 276, 317
Eco47I GGWCC 1 cut(s) 299
Eco57I CTGAAG 1 cut(s) 89
Fnu4HI GCNGC 3 cut(s) 15, 219, 222
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 15, 219, 222
FspBI CTAG 2 cut(s) 161, 213
GluI GCNGC 3 cut(s) 15, 219, 222
HaeIII GGCC 1 cut(s) 318
HapII CCGG 1 cut(s) 171
HpaII CCGG 1 cut(s) 171
HphI GGTGA 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 63, 207, 253
HpyCH4V TGCA 2 cut(s) 167, 221
HpyF10VI GCNNNNNNNGC 3 cut(s) 92, 230, 315
HpyF3I CTNAG 2 cut(s) 96, 249
Kpn2I TCCGGA 1 cut(s) 170
Kzo9I GATC 1 cut(s) 49
LmnI GCTCC 3 cut(s) 83, 92, 229
LpnPI CCDG 4 cut(s) 80, 184, 214, 243
Lsp1109I GCAGC 2 cut(s) 205, 233
LweI GCATC 1 cut(s) 176
MaeI CTAG 2 cut(s) 161, 213
MalI GATC 1 cut(s) 51
MboI GATC 1 cut(s) 49
MluCI AATT 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 5 cut(s) 32, 235, 237, 277, 320
MroI TCCGGA 1 cut(s) 170
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 3 cut(s) 92, 230, 315
NdeII GATC 1 cut(s) 49
PkrI GCNGC 3 cut(s) 16, 220, 223
PspPI GGNCC 2 cut(s) 299, 317
PstI CTGCAG 1 cut(s) 223
SatI GCNGC 3 cut(s) 15, 219, 222
Sau3AI GATC 1 cut(s) 49
Sau96I GGNCC 2 cut(s) 299, 317
SetI ASST 7 cut(s) 9, 69, 97, 162, 226, 264, 304
SfaNI GCATC 1 cut(s) 176
SfcI CTRYAG 1 cut(s) 219
SinI GGWCC 1 cut(s) 299
SmlI CTYRAG 1 cut(s) 116
SmoI CTYRAG 1 cut(s) 116
SpeI ACTAGT 1 cut(s) 212
Sse9I AATT 1 cut(s) 75
SsiI CCGC 1 cut(s) 81
SspMI CTAG 2 cut(s) 161, 213
TaqI TCGA 3 cut(s) 31, 138, 153
TasI AATT 1 cut(s) 75
TseI GCWGC 3 cut(s) 14, 218, 221
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 299
XapI RAATTY 1 cut(s) 75
XspI CTAG 2 cut(s) 161, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.