Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8374049.1

Orthogroup ID

OG0003295

Physical Location & Seq

Genomic Coordinates Reverse (-)

846 .. 1136

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8374049.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

gatgatgtgaagaagattctcggatcggttggagccgatgccgatagcgataggatcgagttgctgttgtctcaattaaaaggaaaagatgtcgccgaggtagttgcctccggaagagagaagttggcatctgtgccttctggtggcgcagttgctggtgtcgcacccgcagccggcaccgctggtgctgcagctactgctgctggcgagcagaagaaggaagagaaggttgaagacgaagaggaagaagatgatgcagatattggtggtctctttggcgatgacgactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

96

Amino Acids

9.57

Weight (kDa)

4.13

Isoelectric Point (pI)

36.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28500
fragaria_vesca	FvH4_3g01910 FvH4_3g12420 FvH4_3g19860 FvH4_3g19900 FvH4_4g01570 FvH4_4g12610
rosa_chinensis	RchiOBHm_Chr5g0001741 RchiOBHm_Chr5g0002781 RchiOBHm_Chr5g0010691 RchiOBHm_Chr5g0033571 RchiOBHm_Chr5g0043451
rosa_laevigata	RLG00000030964 RLG00000030966 RLG00000031059 RLG00000031771 RLG00000033486
rosa_multiflora	Rmu_co8374049.1_g000001 Rmu_sc0001768.1_g000002 Rmu_sc0003286.1_g000002 Rmu_sc0006103.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037440
rosa_rugosa	Rorug04G0392300 Rorug04G0392400 Rorug04G0392500.1 Rorug04G0399500 Rorug04G0451600 Rorug05G0140100
rosa_samantha	Rh4AG132900 Rh5BG025200 Rh5CG261300
rosa_wichuraiana	Rw0G000650 Rw0G022350 Rw5G001340 Rw5G002080 Rw5G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	176
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	2 cut(s)	168, 180
AclWI	GGATC	2 cut(s)	31, 62
AfiI	CCNNNNNNNGG	2 cut(s)	143, 173
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	1 cut(s)	194
AluI	AGCT	1 cut(s)	194
Alw26I	GTCTC	2 cut(s)	75, 275
AlwI	GGATC	2 cut(s)	31, 62
AlwNI	CAGNNNCTG	2 cut(s)	155, 197
Aor13HI	TCCGGA	1 cut(s)	110
ApeKI	GCWGC	4 cut(s)	170, 188, 191, 200
AspLEI	GCGC	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	176
BbsI	GAAGAC	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	175, 182, 187, 203
BcgI	CGANNNNNNTGC	2 cut(s)	86, 120
BcoDI	GTCTC	2 cut(s)	75, 275
BfmI	CTRYAG	1 cut(s)	189
BisI	GCNGC	4 cut(s)	171, 189, 192, 201
BlsI	GCNGC	4 cut(s)	172, 190, 193, 202
BmiI	GGNNCC	2 cut(s)	34, 178
BmsI	GCATC	3 cut(s)	28, 137, 244
BpiI	GAAGAC	1 cut(s)	240
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	96
BsaWI	WCCGGW	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	143, 173
Bse118I	RCCGGY	1 cut(s)	173
BseAI	TCCGGA	1 cut(s)	110
BseDI	CCNNGG	1 cut(s)	96
BseLI	CCNNNNNNNGG	2 cut(s)	143, 173
BseXI	GCAGC	4 cut(s)	175, 182, 187, 203
BshNI	GGYRCC	1 cut(s)	176
BsiSI	CCGG	2 cut(s)	111, 174
BslI	CCNNNNNNNGG	2 cut(s)	143, 173
BsmAI	GTCTC	2 cut(s)	75, 275
Bso31I	GGTCTC	1 cut(s)	275
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	23, 54
BspACI	CCGC	2 cut(s)	168, 180
BspEI	TCCGGA	1 cut(s)	110
BspLI	GGNNCC	2 cut(s)	34, 178
BspMAI	CTGCAG	1 cut(s)	193
BspPI	GGATC	2 cut(s)	31, 62
BspT107I	GGYRCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	275
BsrFI	RCCGGY	1 cut(s)	173
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	23, 54
Bst6I	CTCTTC	3 cut(s)	109, 216, 234
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	3 cut(s)	175, 205, 209
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	2 cut(s)	26, 57
BstMAI	GTCTC	2 cut(s)	75, 275
BstMBI	GATC	2 cut(s)	23, 54
BstMWI	GCNNNNNNNGC	6 cut(s)	161, 170, 179, 188, 197, 200
BstSFI	CTRYAG	1 cut(s)	189
BstV1I	GCAGC	4 cut(s)	175, 182, 187, 203
BstV2I	GAAGAC	1 cut(s)	240
Cac8I	GCNNGC	3 cut(s)	175, 205, 209
CaiI	CAGNNNCTG	2 cut(s)	155, 197
CfoI	GCGC	1 cut(s)	149
Cfr10I	RCCGGY	1 cut(s)	173
CviJI	RGCY	3 cut(s)	35, 173, 194
CviKI_1	RGCY	3 cut(s)	35, 173, 194
DpnI	GATC	2 cut(s)	25, 56
DpnII	GATC	2 cut(s)	23, 54
Eam1104I	CTCTTC	3 cut(s)	109, 216, 234
EarI	CTCTTC	3 cut(s)	109, 216, 234
Eco31I	GGTCTC	1 cut(s)	275
FauI	CCCGC	1 cut(s)	175
Fnu4HI	GCNGC	4 cut(s)	171, 189, 192, 201
Fsp4HI	GCNGC	4 cut(s)	171, 189, 192, 201
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	4 cut(s)	171, 189, 192, 201
HapII	CCGG	2 cut(s)	111, 174
HhaI	GCGC	1 cut(s)	149
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	16
HpaII	CCGG	2 cut(s)	111, 174
Hpy188I	TCNGA	1 cut(s)	23
Hpy188III	TCNNGA	1 cut(s)	111
HpyAV	CCTTC	3 cut(s)	147, 211, 220
HpyCH4V	TGCA	2 cut(s)	191, 257
HpyF10VI	GCNNNNNNNGC	6 cut(s)	161, 170, 179, 188, 197, 200
HspAI	GCGC	1 cut(s)	147
Kpn2I	TCCGGA	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	23, 54
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	6 cut(s)	124, 126, 141, 168, 187, 189
Lsp1109I	GCAGC	4 cut(s)	175, 182, 187, 203
LweI	GCATC	3 cut(s)	28, 137, 244
MalI	GATC	2 cut(s)	25, 56
MboI	GATC	2 cut(s)	23, 54
MboII	GAAGA	9 cut(s)	22, 25, 126, 226, 233, 245, 251, 257, 260
MluCI	AATT	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	3 cut(s)	91, 118, 235
MroI	TCCGGA	1 cut(s)	110
MroNI	GCCGGC	1 cut(s)	173
MseI	TTAA	1 cut(s)	77
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	2 cut(s)	111, 174
MwoI	GCNNNNNNNGC	6 cut(s)	161, 170, 179, 188, 197, 200
NaeI	GCCGGC	1 cut(s)	175
NdeII	GATC	2 cut(s)	23, 54
NgoMIV	GCCGGC	1 cut(s)	173
NlaIV	GGNNCC	2 cut(s)	34, 178
NmeAIII	GCCGAG	1 cut(s)	121
PdiI	GCCGGC	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	16
PkrI	GCNGC	4 cut(s)	172, 190, 193, 202
PspN4I	GGNNCC	2 cut(s)	34, 178
PstI	CTGCAG	1 cut(s)	193
PstNI	CAGNNNCTG	2 cut(s)	155, 197
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	4 cut(s)	171, 189, 192, 201
Sau3AI	GATC	2 cut(s)	23, 54
SetI	ASST	3 cut(s)	102, 196, 231
SfaNI	GCATC	3 cut(s)	28, 137, 244
SfcI	CTRYAG	1 cut(s)	189
Sse9I	AATT	1 cut(s)	74
SsiI	CCGC	2 cut(s)	168, 180
TaqI	TCGA	1 cut(s)	57
TasI	AATT	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	16
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TseI	GCWGC	4 cut(s)	170, 188, 191, 200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.