FvH4_3g19860

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003295
Physical Location & Seq
Forward (+)
13015501 .. 13016231
731 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g19860.t1

Sequence Viewer

Length: 369 bp
ATGAAGGTGATTGCTGCTTATATGCTGGCTATTCTGGGAGGGAACACCAGTCCCACTGCTGGTGATGTGAAGAAGATTCTCGGGTCTGTCGGAGCCGAAGCCGATAATGATAGGATCGAGTTGCTGTTGTCCCAAATGAAATATAAAGATATCAACGAAGTAGTTGCCTCCGGGAGAGAAAAGTTGGCATCTGTTGTTTCTTCTGGCGGCGCAGTTGCTGGTGTCGCACCCGCAGCCGGTAATGCAGGTGCTGCTGATATTGCTTCAGCCGAGCAGAAGAAGGAAGAGAAGGTTGAAGATGAAGAGGAAGAGGATGGAGATCTTGGTGATATCTTTGGCGAAGGTGGTCTCTTTGGCTCCGACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

123

Amino Acids

12.39

Weight (kDa)

4.24

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 112 2.4e-18 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 236
Acc36I ACCTGC 1 cut(s) 236
AciI CCGC 2 cut(s) 207, 231
AclWI GGATC 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 249
AfiI CCNNNNNNNGG 2 cut(s) 59, 236
AgsI TTSAA 1 cut(s) 296
Alw26I GTCTC 1 cut(s) 353
AlwI GGATC 1 cut(s) 122
AlwNI CAGNNNCTG 2 cut(s) 218, 251
Ama87I CYCGRG 1 cut(s) 80
ApeKI GCWGC 3 cut(s) 14, 233, 251
AspLEI GCGC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 172
AsuHPI GGTGA 3 cut(s) 19, 74, 338
AvaI CYCGRG 1 cut(s) 80
BbvI GCAGC 2 cut(s) 238, 245
BccI CCATC 1 cut(s) 308
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcnI CCSGG 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 353
BfuAI ACCTGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 319
BisI GCNGC 4 cut(s) 15, 208, 234, 252
BlsI GCNGC 4 cut(s) 16, 209, 235, 253
Bme1390I CCNGG 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 94, 358
BmrFI CCNGG 1 cut(s) 172
BmsI GCATC 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 172
BsaBI GATNNNNATC 1 cut(s) 318
BsaI GGTCTC 1 cut(s) 353
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 236
Bse118I RCCGGY 1 cut(s) 236
Bse1I ACTGG 1 cut(s) 48
Bse8I GATNNNNATC 1 cut(s) 318
BseGI GGATG 1 cut(s) 319
BseJI GATNNNNATC 1 cut(s) 318
BseLI CCNNNNNNNGG 2 cut(s) 59, 236
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 2 cut(s) 238, 245
BsiHKCI CYCGRG 1 cut(s) 80
BsiSI CCGG 2 cut(s) 171, 237
BslFI GGGAC 2 cut(s) 36, 115
BslI CCNNNNNNNGG 2 cut(s) 59, 236
BsmAI GTCTC 1 cut(s) 353
BsmFI GGGAC 2 cut(s) 36, 115
Bso31I GGTCTC 1 cut(s) 353
BsoBI CYCGRG 1 cut(s) 80
Bsp143I GATC 2 cut(s) 114, 319
BspACI CCGC 2 cut(s) 207, 231
BspLI GGNNCC 2 cut(s) 94, 358
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 122
BspTNI GGTCTC 1 cut(s) 353
BsrFI RCCGGY 1 cut(s) 236
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 236
BssMI GATC 2 cut(s) 114, 319
Bst6I CTCTTC 3 cut(s) 279, 297, 303
BstAPI GCANNNNNTGC 1 cut(s) 251
BstC8I GCNNGC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 319
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 2 cut(s) 117, 322
BstMAI GTCTC 1 cut(s) 353
BstMBI GATC 2 cut(s) 114, 319
BstMWI GCNNNNNNNGC 5 cut(s) 224, 233, 242, 251, 260
BstSCI CCNGG 1 cut(s) 170
BstV1I GCAGC 2 cut(s) 238, 245
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
BtsCI GGATG 1 cut(s) 319
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 1 cut(s) 54
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 27
CaiI CAGNNNCTG 2 cut(s) 218, 251
CfoI GCGC 1 cut(s) 212
Cfr10I RCCGGY 1 cut(s) 236
CviJI RGCY 6 cut(s) 29, 95, 101, 236, 269, 357
CviKI_1 RGCY 6 cut(s) 29, 95, 101, 236, 269, 357
DpnI GATC 2 cut(s) 116, 321
DpnII GATC 2 cut(s) 114, 319
Eam1104I CTCTTC 3 cut(s) 279, 297, 303
EarI CTCTTC 3 cut(s) 279, 297, 303
Eco31I GGTCTC 1 cut(s) 353
Eco32I GATATC 2 cut(s) 151, 331
Eco57I CTGAAG 1 cut(s) 249
Eco88I CYCGRG 1 cut(s) 80
EcoRV GATATC 2 cut(s) 151, 331
FaiI YATR 3 cut(s) 21, 23, 144
FaqI GGGAC 2 cut(s) 36, 115
FauI CCCGC 1 cut(s) 238
Fnu4HI GCNGC 4 cut(s) 15, 208, 234, 252
FokI GGATG 1 cut(s) 326
Fsp4HI GCNGC 4 cut(s) 15, 208, 234, 252
GlaI GCGC 1 cut(s) 211
GluI GCNGC 4 cut(s) 15, 208, 234, 252
HapII CCGG 2 cut(s) 171, 237
HhaI GCGC 1 cut(s) 212
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HinfI GANTC 1 cut(s) 76
HpaII CCGG 2 cut(s) 171, 237
HphI GGTGA 3 cut(s) 19, 74, 338
Hpy188I TCNGA 2 cut(s) 92, 361
Hpy99I CGWCG 1 cut(s) 365
HpyAV CCTTC 3 cut(s) 274, 283, 335
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 5 cut(s) 224, 233, 242, 251, 260
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 2 cut(s) 114, 319
LmnI GCTCC 2 cut(s) 92, 362
LpnPI CCDG 9 cut(s) 11, 20, 45, 61, 184, 189, 204, 231, 250
Lsp1109I GCAGC 2 cut(s) 238, 245
LweI GCATC 1 cut(s) 197
MalI GATC 2 cut(s) 116, 321
MboI GATC 2 cut(s) 114, 319
MboII GAAGA 8 cut(s) 82, 85, 192, 289, 296, 308, 314, 320
MflI RGATCY 1 cut(s) 319
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 4 cut(s) 32, 178, 298, 304
MspI CCGG 2 cut(s) 171, 237
MspR9I CCNGG 1 cut(s) 172
MwoI GCNNNNNNNGC 5 cut(s) 224, 233, 242, 251, 260
NciI CCSGG 1 cut(s) 172
NdeII GATC 2 cut(s) 114, 319
NlaIV GGNNCC 2 cut(s) 94, 358
NmeAIII GCCGAG 1 cut(s) 295
PaqCI CACCTGC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 76
PfoI TCCNGGA 1 cut(s) 170
PkrI GCNGC 4 cut(s) 16, 209, 235, 253
PspN4I GGNNCC 2 cut(s) 94, 358
PstNI CAGNNNCTG 2 cut(s) 218, 251
PsuI RGATCY 1 cut(s) 319
SatI GCNGC 4 cut(s) 15, 208, 234, 252
Sau3AI GATC 2 cut(s) 114, 319
ScrFI CCNGG 1 cut(s) 172
SetI ASST 4 cut(s) 9, 250, 294, 346
SfaNI GCATC 1 cut(s) 197
SsiI CCGC 2 cut(s) 207, 231
StyD4I CCNGG 1 cut(s) 170
TaqI TCGA 1 cut(s) 117
TauI GCSGC 1 cut(s) 210
TfiI GAWTC 1 cut(s) 76
TscAI CASTG 1 cut(s) 61
TseI GCWGC 3 cut(s) 14, 233, 251
TspDTI ATGAA 3 cut(s) 17, 152, 315
TspRI CASTG 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.