Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0003295

Physical Location & Seq

Genomic Coordinates Forward (+)

1782005 .. 1783032

Gene Structure 1028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G002080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGTGGTTGCTGCTTGTATGCTGGCTGCTTTGGGAGGCAACGCCAGTCCTTCGGCCGATGATGTGAAGAAAATTCTCGGATCAGTCGGAGCTGAAGCCGATGACAATAGGATCGAATTGCTCTTGTCCGGACTCAAAGGAAAAGATATCACCGAGCTAGTTGCATCTGGAAGAGAGAAGTTGGCATCGGTGCCTTCCGGTGGCTCAGCTGCCGTTGCATCACCTGCAGCTGCTACTACCGCTGCAGCTCCTGCTGCTGCTGAGGAGAAGCCTGAAGAGAAGGCTGAAGAGGAGGAGGAGGACGACGAATTTATATCGAATATATTTGACGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.42

Weight (kDa)

4.2

Isoelectric Point (pI)

62.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 104	1.5e-20	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28500
fragaria_vesca	FvH4_3g01910 FvH4_3g12420 FvH4_3g19860 FvH4_3g19900 FvH4_4g01570 FvH4_4g12610
rosa_chinensis	RchiOBHm_Chr5g0001741 RchiOBHm_Chr5g0002781 RchiOBHm_Chr5g0010691 RchiOBHm_Chr5g0033571 RchiOBHm_Chr5g0043451
rosa_laevigata	RLG00000030964 RLG00000030966 RLG00000031059 RLG00000031771 RLG00000033486
rosa_multiflora	Rmu_co8374049.1_g000001 Rmu_sc0001768.1_g000002 Rmu_sc0003286.1_g000002 Rmu_sc0006103.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037440
rosa_rugosa	Rorug04G0392300 Rorug04G0392400 Rorug04G0392500.1 Rorug04G0399500 Rorug04G0451600 Rorug05G0140100
rosa_samantha	Rh4AG132900 Rh5BG025200 Rh5CG261300
rosa_wichuraiana	Rw0G000650 Rw0G022350 Rw5G001340 Rw5G002080 Rw5G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	91, 122
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	75, 311
AcuI	CTGAAG	3 cut(s)	117, 297, 309
AfiI	CCNNNNNNNGG	1 cut(s)	203
AluBI	AGCT	5 cut(s)	95, 160, 212, 233, 251
AluI	AGCT	5 cut(s)	95, 160, 212, 233, 251
AlwI	GGATC	2 cut(s)	91, 122
AlwNI	CAGNNNCTG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	9 cut(s)	14, 29, 212, 230, 233, 245, 248, 257, 260
ApoI	RAATTY	2 cut(s)	75, 311
AsuHPI	GGTGA	2 cut(s)	145, 216
BanI	GGYRCC	1 cut(s)	193
BbvCI	CCTCAGC	1 cut(s)	264
BbvI	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BfaI	CTAG	2 cut(s)	161, 340
BfmI	CTRYAG	2 cut(s)	228, 246
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	9 cut(s)	16, 31, 214, 232, 235, 247, 250, 259, 262
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	3 cut(s)	176, 197, 230
Bpu10I	CCTNAGC	1 cut(s)	264
Bpu1102I	GCTNAGC	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	131, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	2 cut(s)	222, 255
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	4 cut(s)	281, 308, 311, 314
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	132, 201
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	83, 114
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	2 cut(s)	221, 256
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	2 cut(s)	232, 250
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	91, 122
BspT107I	GGYRCC	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	83, 114
Bst6I	CTCTTC	3 cut(s)	169, 273, 285
BstAPI	GCANNNNNTGC	2 cut(s)	227, 254
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	2 cut(s)	208, 264
BstKTI	GATC	2 cut(s)	86, 117
BstMBI	GATC	2 cut(s)	83, 114
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 227, 242, 254, 257
BstSFI	CTRYAG	2 cut(s)	228, 246
BstV1I	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	254
DdeI	CTNAG	2 cut(s)	208, 264
DpnI	GATC	2 cut(s)	85, 116
DpnII	GATC	2 cut(s)	83, 114
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	3 cut(s)	169, 273, 285
EarI	CTCTTC	3 cut(s)	169, 273, 285
EclXI	CGGCCG	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	3 cut(s)	117, 297, 309
EcoRV	GATATC	1 cut(s)	151
FaiI	YATR	3 cut(s)	23, 317, 326
Fnu4HI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
Fsp4HI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
FspBI	CTAG	2 cut(s)	161, 340
GluI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	132, 201
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	132, 201
HphI	GGTGA	2 cut(s)	145, 216
Hpy188I	TCNGA	2 cut(s)	83, 92
Hpy188III	TCNNGA	2 cut(s)	132, 171
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	3 cut(s)	63, 207, 277
HpyCH4V	TGCA	4 cut(s)	167, 221, 230, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 227, 242, 254, 257
HpyF3I	CTNAG	2 cut(s)	208, 264
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	83, 114
LmnI	GCTCC	2 cut(s)	92, 256
LpnPI	CCDG	8 cut(s)	11, 61, 145, 156, 214, 240, 267, 288
Lsp1109I	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
LweI	GCATC	3 cut(s)	176, 197, 230
MaeI	CTAG	2 cut(s)	161, 340
MalI	GATC	2 cut(s)	85, 116
MboI	GATC	2 cut(s)	83, 114
MboII	GAAGA	4 cut(s)	82, 186, 290, 302
MluCI	AATT	3 cut(s)	75, 119, 311
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	32, 259, 286, 289, 292, 295, 328
MroI	TCCGGA	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	212, 233, 245
MspI	CCGG	2 cut(s)	132, 201
MwoI	GCNNNNNNNGC	5 cut(s)	218, 227, 242, 254, 257
NdeII	GATC	2 cut(s)	83, 114
NlaIV	GGNNCC	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	235
PkrI	GCNGC	9 cut(s)	16, 31, 214, 232, 235, 247, 250, 259, 262
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	195
PstI	CTGCAG	2 cut(s)	232, 250
PstNI	CAGNNNCTG	1 cut(s)	254
PvuII	CAGCTG	2 cut(s)	212, 233
SatI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
Sau3AI	GATC	2 cut(s)	83, 114
SchI	GAGTC	1 cut(s)	129
SetI	ASST	7 cut(s)	9, 97, 162, 214, 229, 235, 253
SfaNI	GCATC	3 cut(s)	176, 197, 230
SfcI	CTRYAG	2 cut(s)	228, 246
Sse9I	AATT	3 cut(s)	75, 119, 311
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	161, 340
TaqI	TCGA	2 cut(s)	117, 320
TasI	AATT	3 cut(s)	75, 119, 311
TseI	GCWGC	9 cut(s)	14, 29, 212, 230, 233, 245, 248, 257, 260
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	75, 311
XspI	CTAG	2 cut(s)	161, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.