RLG00000031771

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003295
Physical Location & Seq
Forward (+)
8139757 .. 8140083
327 bp
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UTR
Exon/CDS
Intron
RLM00000031771

Sequence Viewer

Length: 327 bp
ATGAAGGTGATTGCTGCTTACATGCTCTCTCGATTGGGAGGGAACACCAATCCTTCTGCCAATGATCTGAAGAAACTTATCGAATCAGTTGGAGCTGAGGTTGATGGAGACAGAATCGAGTTGTTCTTGTCCCAAGTCAATGGAAAAAATATCACCGAGCTAGTTGCATCCGGAAAAGAGAAGTTGGCATCTGTGCCTTCTGGCGGTGACGCTACTAGTGCTGCAGCTCCTCCTGCTATTGCTGAGGAGACAAAAGAAGAGAAGGTTGAAGAAGAGGAGGACGACTTTGATGAACCTCTTTTCGATCTCTTTGGCCCCGACAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

109

Amino Acids

11.47

Weight (kDa)

4.19

Isoelectric Point (pI)

51.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 104 9.6e-19 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 89
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 1 cut(s) 269
AhlI ACTAGT 1 cut(s) 215
AluBI AGCT 3 cut(s) 95, 160, 227
AluI AGCT 3 cut(s) 95, 160, 227
Alw26I GTCTC 2 cut(s) 102, 242
Aor13HI TCCGGA 1 cut(s) 170
AoxI GGCC 1 cut(s) 313
ApeKI GCWGC 3 cut(s) 14, 221, 224
AspS9I GGNCC 1 cut(s) 314
AsuHPI GGTGA 3 cut(s) 19, 145, 218
BbvCI CCTCAGC 2 cut(s) 96, 243
BbvI GCAGC 2 cut(s) 208, 236
BccI CCATC 1 cut(s) 98
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcoDI GTCTC 2 cut(s) 102, 242
BcuI ACTAGT 1 cut(s) 215
BfaI CTAG 2 cut(s) 161, 216
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 3 cut(s) 15, 222, 225
BlsI GCNGC 3 cut(s) 16, 223, 226
BmgT120I GGNCC 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 316
BmsI GCATC 2 cut(s) 176, 197
Bpu10I CCTNAGC 2 cut(s) 96, 243
BsaWI WCCGGW 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 203
BseAI TCCGGA 1 cut(s) 170
BseGI GGATG 1 cut(s) 167
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMII CTCAG 2 cut(s) 87, 234
BseRI GAGGAG 3 cut(s) 219, 260, 290
BseXI GCAGC 2 cut(s) 208, 236
BshFI GGCC 1 cut(s) 315
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 102, 242
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 1 cut(s) 315
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 2 cut(s) 64, 304
BspACI CCGC 1 cut(s) 204
BspANI GGCC 1 cut(s) 315
BspCNI CTCAG 2 cut(s) 88, 235
BspEI TCCGGA 1 cut(s) 170
BspLI GGNNCC 1 cut(s) 316
BspMAI CTGCAG 1 cut(s) 226
BssMI GATC 2 cut(s) 64, 304
Bst6I CTCTTC 2 cut(s) 252, 267
BstDEI CTNAG 2 cut(s) 96, 243
BstF5I GGATG 1 cut(s) 167
BstKTI GATC 2 cut(s) 67, 307
BstMAI GTCTC 2 cut(s) 102, 242
BstMBI GATC 2 cut(s) 64, 304
BstMWI GCNNNNNNNGC 2 cut(s) 218, 233
BstNSI RCATGY 1 cut(s) 25
BstSFI CTRYAG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 208, 236
BstXI CCANNNNNNTGG 1 cut(s) 140
BsuRI GGCC 1 cut(s) 315
BtsCI GGATG 1 cut(s) 167
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 218
CviAII CATG 1 cut(s) 22
CviJI RGCY 4 cut(s) 95, 160, 227, 315
CviKI_1 RGCY 4 cut(s) 95, 160, 227, 315
DdeI CTNAG 2 cut(s) 96, 243
DpnI GATC 2 cut(s) 66, 306
DpnII GATC 2 cut(s) 64, 304
Eam1104I CTCTTC 2 cut(s) 252, 267
EarI CTCTTC 2 cut(s) 252, 267
Eco57I CTGAAG 1 cut(s) 89
FaeI CATG 1 cut(s) 25
FaiI YATR 1 cut(s) 23
FaqI GGGAC 1 cut(s) 115
FatI CATG 1 cut(s) 21
Fnu4HI GCNGC 3 cut(s) 15, 222, 225
FokI GGATG 1 cut(s) 154
Fsp4HI GCNGC 3 cut(s) 15, 222, 225
FspBI CTAG 2 cut(s) 161, 216
GluI GCNGC 3 cut(s) 15, 222, 225
HaeIII GGCC 1 cut(s) 315
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 218
Hin1II CATG 1 cut(s) 25
HinfI GANTC 2 cut(s) 83, 114
HpaII CCGG 1 cut(s) 171
HphI GGTGA 3 cut(s) 19, 145, 218
Hpy188I TCNGA 1 cut(s) 69
Hpy188III TCNNGA 2 cut(s) 30, 171
HpyAV CCTTC 3 cut(s) 63, 207, 256
HpyCH4V TGCA 2 cut(s) 167, 224
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 233
HpyF3I CTNAG 2 cut(s) 96, 243
Hsp92II CATG 1 cut(s) 25
Kpn2I TCCGGA 1 cut(s) 170
Kzo9I GATC 2 cut(s) 64, 304
LmnI GCTCC 2 cut(s) 92, 232
LpnPI CCDG 3 cut(s) 184, 186, 246
Lsp1109I GCAGC 2 cut(s) 208, 236
LweI GCATC 2 cut(s) 176, 197
MaeI CTAG 2 cut(s) 161, 216
MaeIII GTNAC 1 cut(s) 206
MalI GATC 2 cut(s) 66, 306
MboI GATC 2 cut(s) 64, 304
MboII GAAGA 4 cut(s) 82, 269, 281, 284
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 7 cut(s) 32, 91, 238, 240, 268, 271, 306
MroI TCCGGA 1 cut(s) 170
MspI CCGG 1 cut(s) 171
MwoI GCNNNNNNNGC 2 cut(s) 218, 233
NdeII GATC 2 cut(s) 64, 304
NlaIII CATG 1 cut(s) 25
NlaIV GGNNCC 1 cut(s) 316
NmuCI GTSAC 1 cut(s) 206
NspI RCATGY 1 cut(s) 25
PfeI GAWTC 2 cut(s) 83, 114
PkrI GCNGC 3 cut(s) 16, 223, 226
PspN4I GGNNCC 1 cut(s) 316
PspPI GGNCC 1 cut(s) 314
PstI CTGCAG 1 cut(s) 226
SatI GCNGC 3 cut(s) 15, 222, 225
Sau3AI GATC 2 cut(s) 64, 304
Sau96I GGNCC 1 cut(s) 314
SetI ASST 7 cut(s) 9, 97, 102, 162, 229, 267, 298
SfaNI GCATC 2 cut(s) 176, 197
SfcI CTRYAG 1 cut(s) 222
SpeI ACTAGT 1 cut(s) 215
SsiI CCGC 1 cut(s) 204
SspMI CTAG 2 cut(s) 161, 216
TaqI TCGA 4 cut(s) 31, 81, 117, 303
TfiI GAWTC 2 cut(s) 83, 114
TseFI GTSAC 1 cut(s) 206
TseI GCWGC 3 cut(s) 14, 221, 224
Tsp45I GTSAC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 17, 306
XceI RCATGY 1 cut(s) 25
XspI CTAG 2 cut(s) 161, 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.