RchiOBHm_Chr5g0033571

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0003295
Physical Location & Seq
Forward (+)
27423275 .. 27423625
351 bp
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UTR
Exon/CDS
Intron
PRQ31264

Sequence Viewer

Length: 351 bp
ATGAAGGTGCTTGCTGCCTATTTGCTTGCTGTTCTGGGAGGGAACACCAGTCCCTCTGCTGATGATGTGAAGAAGATTCTCGGATCGGTTGGAGCCGATGCCGATAGCGATAGGATCGAGTTGCTGTTGTCTCAATTAAAAGGAAAAGATGTCGCCGAGGTAGTTGCCTCCGGAAGAGAGAAGTTGGCATCTGTGCCTTCTGGTGGCGCAGTTGCTGGTGGCGCACCCGCAGCCGGCACCGCTGGTGCTGCAGCTACTGCTGCTGGCGAGCAGAAGAAGGAAGAGAAGGTTGAAGATGAAGAGGAAGAAGATGATGCAGATATTGGTGGTCTCTTTGGCGACGACGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

116

Amino Acids

11.48

Weight (kDa)

4.21

Isoelectric Point (pI)

35.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 17 - 112 6.7e-21 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 170
AciI CCGC 2 cut(s) 228, 240
AclWI GGATC 2 cut(s) 91, 122
AfiI CCNNNNNNNGG 2 cut(s) 203, 233
AgsI TTSAA 1 cut(s) 293
AluBI AGCT 1 cut(s) 254
AluI AGCT 1 cut(s) 254
Alw26I GTCTC 2 cut(s) 135, 335
AlwI GGATC 2 cut(s) 91, 122
AlwNI CAGNNNCTG 2 cut(s) 215, 257
Aor13HI TCCGGA 1 cut(s) 170
ApeKI GCWGC 5 cut(s) 14, 230, 248, 251, 260
AspLEI GCGC 2 cut(s) 209, 224
BanI GGYRCC 1 cut(s) 236
BbvI GCAGC 4 cut(s) 235, 242, 247, 263
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BcoDI GTCTC 2 cut(s) 135, 335
BfmI CTRYAG 1 cut(s) 249
BisI GCNGC 5 cut(s) 15, 231, 249, 252, 261
BlsI GCNGC 5 cut(s) 16, 232, 250, 253, 262
BmiI GGNNCC 2 cut(s) 94, 238
BmsI GCATC 3 cut(s) 88, 197, 304
BsaI GGTCTC 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 156
BsaWI WCCGGW 1 cut(s) 170
Bsc4I CCNNNNNNNGG 2 cut(s) 203, 233
Bse118I RCCGGY 1 cut(s) 233
Bse1I ACTGG 1 cut(s) 48
BseAI TCCGGA 1 cut(s) 170
BseDI CCNNGG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 203, 233
BseNI ACTGG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 235, 242, 247, 263
BshNI GGYRCC 1 cut(s) 236
BsiSI CCGG 2 cut(s) 171, 234
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 2 cut(s) 203, 233
BsmAI GTCTC 2 cut(s) 135, 335
BsmFI GGGAC 1 cut(s) 36
Bso31I GGTCTC 1 cut(s) 335
Bsp13I TCCGGA 1 cut(s) 170
Bsp143I GATC 2 cut(s) 83, 114
BspACI CCGC 2 cut(s) 228, 240
BspEI TCCGGA 1 cut(s) 170
BspLI GGNNCC 2 cut(s) 94, 238
BspMAI CTGCAG 1 cut(s) 253
BspPI GGATC 2 cut(s) 91, 122
BspT107I GGYRCC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 335
BsrFI RCCGGY 1 cut(s) 233
BsrI ACTGG 1 cut(s) 48
BssAI RCCGGY 1 cut(s) 233
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 83, 114
Bst6I CTCTTC 3 cut(s) 169, 276, 294
BstAPI GCANNNNNTGC 1 cut(s) 257
BstC8I GCNNGC 5 cut(s) 12, 27, 235, 265, 269
BstHHI GCGC 2 cut(s) 209, 224
BstKTI GATC 2 cut(s) 86, 117
BstMAI GTCTC 2 cut(s) 135, 335
BstMBI GATC 2 cut(s) 83, 114
BstMWI GCNNNNNNNGC 6 cut(s) 221, 230, 239, 248, 257, 260
BstSFI CTRYAG 1 cut(s) 249
BstV1I GCAGC 4 cut(s) 235, 242, 247, 263
Cac8I GCNNGC 5 cut(s) 12, 27, 235, 265, 269
CaiI CAGNNNCTG 2 cut(s) 215, 257
CfoI GCGC 2 cut(s) 209, 224
Cfr10I RCCGGY 1 cut(s) 233
CviJI RGCY 3 cut(s) 95, 233, 254
CviKI_1 RGCY 3 cut(s) 95, 233, 254
DpnI GATC 2 cut(s) 85, 116
DpnII GATC 2 cut(s) 83, 114
Eam1104I CTCTTC 3 cut(s) 169, 276, 294
EarI CTCTTC 3 cut(s) 169, 276, 294
Eco31I GGTCTC 1 cut(s) 335
FaqI GGGAC 1 cut(s) 36
FauI CCCGC 1 cut(s) 235
Fnu4HI GCNGC 5 cut(s) 15, 231, 249, 252, 261
Fsp4HI GCNGC 5 cut(s) 15, 231, 249, 252, 261
GlaI GCGC 2 cut(s) 208, 223
GluI GCNGC 5 cut(s) 15, 231, 249, 252, 261
HapII CCGG 2 cut(s) 171, 234
HhaI GCGC 2 cut(s) 209, 224
Hin6I GCGC 2 cut(s) 207, 222
HinP1I GCGC 2 cut(s) 207, 222
HinfI GANTC 1 cut(s) 76
HpaII CCGG 2 cut(s) 171, 234
Hpy188I TCNGA 1 cut(s) 83
Hpy188III TCNNGA 1 cut(s) 171
Hpy99I CGWCG 2 cut(s) 344, 347
HpyAV CCTTC 3 cut(s) 207, 271, 280
HpyCH4V TGCA 2 cut(s) 251, 317
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 230, 239, 248, 257, 260
HspAI GCGC 2 cut(s) 207, 222
Kpn2I TCCGGA 1 cut(s) 170
KroI GCCGGC 1 cut(s) 233
KroNI GCCGGC 1 cut(s) 235
Kzo9I GATC 2 cut(s) 83, 114
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 8 cut(s) 20, 61, 184, 186, 201, 228, 247, 249
Lsp1109I GCAGC 4 cut(s) 235, 242, 247, 263
LweI GCATC 3 cut(s) 88, 197, 304
MalI GATC 2 cut(s) 85, 116
MboI GATC 2 cut(s) 83, 114
MboII GAAGA 9 cut(s) 82, 85, 186, 286, 293, 305, 311, 317, 320
MluCI AATT 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 5 cut(s) 32, 64, 151, 178, 295
MroI TCCGGA 1 cut(s) 170
MroNI GCCGGC 1 cut(s) 233
MseI TTAA 1 cut(s) 137
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 2 cut(s) 171, 234
MwoI GCNNNNNNNGC 6 cut(s) 221, 230, 239, 248, 257, 260
NaeI GCCGGC 1 cut(s) 235
NdeII GATC 2 cut(s) 83, 114
NgoMIV GCCGGC 1 cut(s) 233
NlaIV GGNNCC 2 cut(s) 94, 238
NmeAIII GCCGAG 1 cut(s) 181
PdiI GCCGGC 1 cut(s) 235
PfeI GAWTC 1 cut(s) 76
PkrI GCNGC 5 cut(s) 16, 232, 250, 253, 262
PspN4I GGNNCC 2 cut(s) 94, 238
PstI CTGCAG 1 cut(s) 253
PstNI CAGNNNCTG 2 cut(s) 215, 257
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 5 cut(s) 15, 231, 249, 252, 261
Sau3AI GATC 2 cut(s) 83, 114
SetI ASST 4 cut(s) 9, 162, 256, 291
SfaNI GCATC 3 cut(s) 88, 197, 304
SfcI CTRYAG 1 cut(s) 249
Sse9I AATT 1 cut(s) 134
SsiI CCGC 2 cut(s) 228, 240
TaqI TCGA 1 cut(s) 117
TasI AATT 1 cut(s) 134
TfiI GAWTC 1 cut(s) 76
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
TseI GCWGC 5 cut(s) 14, 230, 248, 251, 260
TspDTI ATGAA 2 cut(s) 17, 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.