Rw5G001340

Belongs to the eukaryotic ribosomal protein P1 P2 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003295
Physical Location & Seq
Reverse (-)
1096909 .. 1097938
1030 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G001340.1

Sequence Viewer

Length: 315 bp
ATGCTGGCTGTTTTGGGAGGGAACGCCAGTCCCTCTGCGGATGATTTGAAGAAAATTCTTGGATCAGTTGGAGCTGAGGCTGATGACGATAGGATTGAGTTGATGTTTTCCCAAGTTAAAGGTAAGTGTATCACCGAGCTAGTTGCATGCGGAAGAGAGAAGATGGCATCTGTTCCTTCTAGTGGCGGTGCAGTTGATGTTGCCACAATTGCAACAGGTGACGTTGCTCCTTCTGCTGAGCACAAGGAAGAGAAGGTTGAAGAGGATGAAGAGTCCGATAATGAAATTTTCACCCTCTTTGACGACGAAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_60s

Protein Analysis

104

Amino Acids

10.9

Weight (kDa)

4.13

Isoelectric Point (pI)

50.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_60s PF00428 10 - 100 1.7e-14 60s Acidic ribosomal protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 38, 150, 186
AclWI GGATC 1 cut(s) 70
AcsI RAATTY 2 cut(s) 54, 285
AfiI CCNNNNNNNGG 1 cut(s) 182
AgsI TTSAA 2 cut(s) 49, 260
AluBI AGCT 2 cut(s) 74, 139
AluI AGCT 2 cut(s) 74, 139
Alw21I GWGCWC 1 cut(s) 243
AlwI GGATC 1 cut(s) 70
ApoI RAATTY 2 cut(s) 54, 285
AsuHPI GGTGA 3 cut(s) 124, 230, 283
Bbv12I GWGCWC 1 cut(s) 243
BbvCI CCTCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 157
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BfaI CTAG 2 cut(s) 140, 180
BlpI GCTNAGC 1 cut(s) 237
BmsI GCATC 1 cut(s) 176
Bpu10I CCTNAGC 1 cut(s) 75
Bpu1102I GCTNAGC 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 182
Bse1I ACTGG 1 cut(s) 27
BseGI GGATG 2 cut(s) 46, 271
BseLI CCNNNNNNNGG 1 cut(s) 182
BseMII CTCAG 2 cut(s) 66, 228
BseNI ACTGG 1 cut(s) 27
BsgI GTGCAG 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 243
BslFI GGGAC 1 cut(s) 15
BslI CCNNNNNNNGG 1 cut(s) 182
BsmFI GGGAC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 243
Bsp143I GATC 1 cut(s) 62
Bsp1720I GCTNAGC 1 cut(s) 237
BspACI CCGC 3 cut(s) 38, 150, 186
BspCNI CTCAG 2 cut(s) 67, 229
BspPI GGATC 1 cut(s) 70
BsrI ACTGG 1 cut(s) 27
BssMI GATC 1 cut(s) 62
Bst6I CTCTTC 4 cut(s) 148, 243, 255, 264
BstC8I GCNNGC 2 cut(s) 6, 148
BstDEI CTNAG 2 cut(s) 75, 237
BstF5I GGATG 2 cut(s) 46, 271
BstKTI GATC 1 cut(s) 65
BstMBI GATC 1 cut(s) 62
BstMWI GCNNNNNNNGC 2 cut(s) 209, 233
BstNSI RCATGY 1 cut(s) 150
BtsCI GGATG 2 cut(s) 46, 271
Cac8I GCNNGC 2 cut(s) 6, 148
CviAII CATG 1 cut(s) 147
CviJI RGCY 4 cut(s) 8, 74, 80, 139
CviKI_1 RGCY 4 cut(s) 8, 74, 80, 139
DdeI CTNAG 2 cut(s) 75, 237
DpnI GATC 1 cut(s) 64
DpnII GATC 1 cut(s) 62
Eam1104I CTCTTC 4 cut(s) 148, 243, 255, 264
EarI CTCTTC 4 cut(s) 148, 243, 255, 264
FaeI CATG 1 cut(s) 150
FaiI YATR 2 cut(s) 148, 313
FaqI GGGAC 1 cut(s) 15
FatI CATG 1 cut(s) 146
FokI GGATG 2 cut(s) 53, 278
FspBI CTAG 2 cut(s) 140, 180
Hin1II CATG 1 cut(s) 150
HinfI GANTC 1 cut(s) 272
HphI GGTGA 3 cut(s) 124, 230, 283
Hpy188I TCNGA 1 cut(s) 277
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 3 cut(s) 186, 240, 247
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 3 cut(s) 146, 191, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 209, 233
HpyF3I CTNAG 2 cut(s) 75, 237
HpySE526I ACGT 1 cut(s) 222
Hsp92II CATG 1 cut(s) 150
Kzo9I GATC 1 cut(s) 62
LmnI GCTCC 2 cut(s) 71, 232
LpnPI CCDG 2 cut(s) 40, 201
LweI GCATC 1 cut(s) 176
MaeI CTAG 2 cut(s) 140, 180
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 218
MalI GATC 1 cut(s) 64
MboI GATC 1 cut(s) 62
MboII GAAGA 6 cut(s) 61, 165, 172, 260, 272, 281
MfeI CAATTG 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 243
MluCI AATT 3 cut(s) 54, 207, 285
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 5 cut(s) 11, 43, 70, 256, 305
MseI TTAA 1 cut(s) 117
MunI CAATTG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 209, 233
NdeII GATC 1 cut(s) 62
NlaIII CATG 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PleI GAGTC 1 cut(s) 280
PpsI GAGTC 1 cut(s) 280
SaqAI TTAA 1 cut(s) 117
Sau3AI GATC 1 cut(s) 62
SchI GAGTC 1 cut(s) 281
SduI GDGCHC 1 cut(s) 243
SetI ASST 6 cut(s) 76, 124, 141, 220, 225, 258
SfaNI GCATC 1 cut(s) 176
SphI GCATGC 1 cut(s) 150
Sse9I AATT 3 cut(s) 54, 207, 285
SsiI CCGC 3 cut(s) 38, 150, 186
SspMI CTAG 2 cut(s) 140, 180
TaiI ACGT 1 cut(s) 225
TasI AATT 3 cut(s) 54, 207, 285
Tru1I TTAA 1 cut(s) 117
Tru9I TTAA 1 cut(s) 117
TseFI GTSAC 1 cut(s) 218
Tsp45I GTSAC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 282, 297
XapI RAATTY 2 cut(s) 54, 285
XceI RCATGY 1 cut(s) 150
XspI CTAG 2 cut(s) 140, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.