Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003295

Physical Location & Seq

Genomic Coordinates Forward (+)

1643129 .. 1644274

Gene Structure 1146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28412

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGTGGTTGCTGCTTGTATGCTGGCTGCTTTGGGAGGCAACGCCAGTCCTTCGGCCGATGATGTGAAGAAAATTCTCGGATCAGTCGGAGCTGAAGCCGATGACAATAGGATCGAATTGCTCTTGTCCGGACTCAAAGGAAAAGATATCACCGAGCTAGTTGCATCTGGAAGAGAGAAGTTGGCATCGGTGCCTTCCGGTGGCTCAGCTGCCGTTGCATCACCTGCAGCTGCTACTACCGCTGCAGCTCCTGCTGCTGCTGAGGAGAAGGCTGAGGAGAAGGCTGAAGAGGAGGAGGAGGACGACGAATTTATATCGAATATATTTGACGAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_60s

Protein Analysis

113

Amino Acids

11.39

Weight (kDa)

4.2

Isoelectric Point (pI)

61.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_60s	PF00428	17 - 103	1.3e-20	60s Acidic ribosomal protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G28500
fragaria_vesca	FvH4_3g01910 FvH4_3g12420 FvH4_3g19860 FvH4_3g19900 FvH4_4g01570 FvH4_4g12610
rosa_chinensis	RchiOBHm_Chr5g0001741 RchiOBHm_Chr5g0002781 RchiOBHm_Chr5g0010691 RchiOBHm_Chr5g0033571 RchiOBHm_Chr5g0043451
rosa_laevigata	RLG00000030964 RLG00000030966 RLG00000031059 RLG00000031771 RLG00000033486
rosa_multiflora	Rmu_co8374049.1_g000001 Rmu_sc0001768.1_g000002 Rmu_sc0003286.1_g000002 Rmu_sc0006103.1_g000009
rosa_roxburghii	Rroxscaffold_1G00037440
rosa_rugosa	Rorug04G0392300 Rorug04G0392400 Rorug04G0392500.1 Rorug04G0399500 Rorug04G0451600 Rorug05G0140100
rosa_samantha	Rh4AG132900 Rh5BG025200 Rh5CG261300
rosa_wichuraiana	Rw0G000650 Rw0G022350 Rw5G001340 Rw5G002080 Rw5G021150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	235
Acc36I	ACCTGC	1 cut(s)	235
AccB1I	GGYRCC	1 cut(s)	193
AccIII	TCCGGA	1 cut(s)	131
AciI	CCGC	1 cut(s)	243
AclWI	GGATC	2 cut(s)	91, 122
AcoI	YGGCCR	1 cut(s)	57
AcsI	RAATTY	2 cut(s)	75, 311
AcuI	CTGAAG	2 cut(s)	117, 309
AfiI	CCNNNNNNNGG	1 cut(s)	203
AluBI	AGCT	5 cut(s)	95, 160, 212, 233, 251
AluI	AGCT	5 cut(s)	95, 160, 212, 233, 251
AlwI	GGATC	2 cut(s)	91, 122
AlwNI	CAGNNNCTG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	131
AoxI	GGCC	1 cut(s)	57
ApeKI	GCWGC	9 cut(s)	14, 29, 212, 230, 233, 245, 248, 257, 260
ApoI	RAATTY	2 cut(s)	75, 311
AsuHPI	GGTGA	2 cut(s)	145, 216
BanI	GGYRCC	1 cut(s)	193
BbvCI	CCTCAGC	2 cut(s)	264, 276
BbvI	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
BceAI	ACGGC	1 cut(s)	200
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BfaI	CTAG	2 cut(s)	161, 340
BfmI	CTRYAG	2 cut(s)	228, 246
BfuAI	ACCTGC	1 cut(s)	235
BisI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
BlpI	GCTNAGC	1 cut(s)	208
BlsI	GCNGC	9 cut(s)	16, 31, 214, 232, 235, 247, 250, 259, 262
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	3 cut(s)	176, 197, 230
Bpu10I	CCTNAGC	2 cut(s)	264, 276
Bpu1102I	GCTNAGC	1 cut(s)	208
BsaWI	WCCGGW	2 cut(s)	131, 200
Bsc4I	CCNNNNNNNGG	1 cut(s)	203
Bse1I	ACTGG	1 cut(s)	48
BseAI	TCCGGA	1 cut(s)	131
BseLI	CCNNNNNNNGG	1 cut(s)	203
BseMII	CTCAG	3 cut(s)	222, 255, 267
BseNI	ACTGG	1 cut(s)	48
BseRI	GAGGAG	5 cut(s)	281, 293, 308, 311, 314
BseX3I	CGGCCG	1 cut(s)	57
BseXI	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	1 cut(s)	193
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	132, 201
BslI	CCNNNNNNNGG	1 cut(s)	203
BsnI	GGCC	1 cut(s)	59
Bsp13I	TCCGGA	1 cut(s)	131
Bsp143I	GATC	2 cut(s)	83, 114
Bsp1720I	GCTNAGC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	3 cut(s)	221, 256, 268
BspEI	TCCGGA	1 cut(s)	131
BspLI	GGNNCC	1 cut(s)	195
BspMAI	CTGCAG	2 cut(s)	232, 250
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	2 cut(s)	91, 122
BspT107I	GGYRCC	1 cut(s)	193
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	83, 114
Bst6I	CTCTTC	2 cut(s)	169, 285
BstAPI	GCANNNNNTGC	2 cut(s)	227, 254
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	3 cut(s)	208, 264, 276
BstKTI	GATC	2 cut(s)	86, 117
BstMBI	GATC	2 cut(s)	83, 114
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	5 cut(s)	218, 227, 242, 254, 257
BstSFI	CTRYAG	2 cut(s)	228, 246
BstV1I	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
BstZI	CGGCCG	1 cut(s)	57
BsuRI	GGCC	1 cut(s)	59
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	27
CaiI	CAGNNNCTG	1 cut(s)	254
DdeI	CTNAG	3 cut(s)	208, 264, 276
DpnI	GATC	2 cut(s)	85, 116
DpnII	GATC	2 cut(s)	83, 114
EaeI	YGGCCR	1 cut(s)	57
EagI	CGGCCG	1 cut(s)	57
Eam1104I	CTCTTC	2 cut(s)	169, 285
EarI	CTCTTC	2 cut(s)	169, 285
EclXI	CGGCCG	1 cut(s)	57
Eco32I	GATATC	1 cut(s)	151
Eco52I	CGGCCG	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	117, 309
EcoRV	GATATC	1 cut(s)	151
FaiI	YATR	3 cut(s)	23, 317, 326
Fnu4HI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
Fsp4HI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
FspBI	CTAG	2 cut(s)	161, 340
GluI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	132, 201
HinfI	GANTC	1 cut(s)	135
HpaII	CCGG	2 cut(s)	132, 201
HphI	GGTGA	2 cut(s)	145, 216
Hpy188I	TCNGA	2 cut(s)	83, 92
Hpy188III	TCNNGA	2 cut(s)	132, 171
Hpy99I	CGWCG	1 cut(s)	311
HpyAV	CCTTC	4 cut(s)	63, 207, 265, 277
HpyCH4V	TGCA	4 cut(s)	167, 221, 230, 248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	218, 227, 242, 254, 257
HpyF3I	CTNAG	3 cut(s)	208, 264, 276
Kpn2I	TCCGGA	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	83, 114
LmnI	GCTCC	2 cut(s)	92, 256
LpnPI	CCDG	7 cut(s)	11, 61, 145, 156, 214, 240, 267
Lsp1109I	GCAGC	8 cut(s)	16, 199, 220, 232, 242, 244, 247, 260
LweI	GCATC	3 cut(s)	176, 197, 230
MaeI	CTAG	2 cut(s)	161, 340
MalI	GATC	2 cut(s)	85, 116
MboI	GATC	2 cut(s)	83, 114
MboII	GAAGA	3 cut(s)	82, 186, 302
MluCI	AATT	3 cut(s)	75, 119, 311
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	8 cut(s)	32, 259, 271, 286, 289, 292, 295, 328
MroI	TCCGGA	1 cut(s)	131
MspA1I	CMGCKG	3 cut(s)	212, 233, 245
MspI	CCGG	2 cut(s)	132, 201
MwoI	GCNNNNNNNGC	5 cut(s)	218, 227, 242, 254, 257
NdeII	GATC	2 cut(s)	83, 114
NlaIV	GGNNCC	1 cut(s)	195
PaqCI	CACCTGC	1 cut(s)	235
PkrI	GCNGC	9 cut(s)	16, 31, 214, 232, 235, 247, 250, 259, 262
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	195
PstI	CTGCAG	2 cut(s)	232, 250
PstNI	CAGNNNCTG	1 cut(s)	254
PvuII	CAGCTG	2 cut(s)	212, 233
SatI	GCNGC	9 cut(s)	15, 30, 213, 231, 234, 246, 249, 258, 261
Sau3AI	GATC	2 cut(s)	83, 114
SchI	GAGTC	1 cut(s)	129
SetI	ASST	7 cut(s)	9, 97, 162, 214, 229, 235, 253
SfaNI	GCATC	3 cut(s)	176, 197, 230
SfcI	CTRYAG	2 cut(s)	228, 246
Sse9I	AATT	3 cut(s)	75, 119, 311
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	2 cut(s)	161, 340
TaqI	TCGA	2 cut(s)	117, 320
TasI	AATT	3 cut(s)	75, 119, 311
TseI	GCWGC	9 cut(s)	14, 29, 212, 230, 233, 245, 248, 257, 260
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	2 cut(s)	75, 311
XspI	CTAG	2 cut(s)	161, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.