RchiOBHm_Chr5g0043451

Belongs to the eukaryotic ribosomal protein P1 P2 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
38402715 .. 38406616
3902 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32176

Sequence Viewer

Length: 300 bp
ATGCTTGGAGTCCTTAACCTTGGAGTATCTCGTTGCTCTTATTTCCTTTTGGACTTCTCTCTGTCTCAATATCAGCCGCTGCACTTTCTTCAATCATCGTTTCTCATTGAAGCTCTGCTCTCTCTGATCTACTCTAACACGATGAAGGTTGTTGCTGCATATCTTCTGGCTGTTTTGGGAGGGAACACCAGCCCCTCAGCTGATGATGTGAAGAATATTCTTAGCTCAGTTGGAGCTGAGGCTGATGGTGATAGGATTGAGTTGCTAATTGTCCCAAGTGAAAGGCAAAGATATCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

99

Amino Acids

10.87

Weight (kDa)

5.07

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 77
AgsI TTSAA 2 cut(s) 92, 110
AluBI AGCT 4 cut(s) 113, 200, 225, 236
AluI AGCT 4 cut(s) 113, 200, 225, 236
Alw26I GTCTC 1 cut(s) 69
AlwNI CAGNNNCTG 1 cut(s) 79
ApeKI GCWGC 2 cut(s) 79, 155
AsuHPI GGTGA 1 cut(s) 260
BbvCI CCTCAGC 2 cut(s) 196, 237
BbvI GCAGC 2 cut(s) 66, 142
BccI CCATC 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 69
BisI GCNGC 3 cut(s) 77, 80, 156
BlsI GCNGC 3 cut(s) 78, 81, 157
Bpu10I CCTNAGC 2 cut(s) 196, 237
BsaJI CCNNGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 19
BseMII CTCAG 3 cut(s) 210, 228, 240
BseXI GCAGC 2 cut(s) 66, 142
BsgI GTGCAG 1 cut(s) 65
BslFI GGGAC 1 cut(s) 257
BsmAI GTCTC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 126
BspACI CCGC 1 cut(s) 77
BspCNI CTCAG 3 cut(s) 209, 229, 239
BssECI CCNNGG 1 cut(s) 19
BssMI GATC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 19
BstDEI CTNAG 4 cut(s) 196, 221, 226, 237
BstKTI GATC 1 cut(s) 129
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 1 cut(s) 126
BstV1I GCAGC 2 cut(s) 66, 142
BtsIMutI CAGTG 1 cut(s) 295
CaiI CAGNNNCTG 1 cut(s) 79
CviJI RGCY 8 cut(s) 76, 113, 170, 192, 200, 225, 236, 242
CviKI_1 RGCY 8 cut(s) 76, 113, 170, 192, 200, 225, 236, 242
DdeI CTNAG 4 cut(s) 196, 221, 226, 237
DpnI GATC 1 cut(s) 128
DpnII GATC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 19
Eco32I GATATC 1 cut(s) 293
EcoRV GATATC 1 cut(s) 293
EcoT14I CCWWGG 1 cut(s) 19
ErhI CCWWGG 1 cut(s) 19
FaiI YATR 1 cut(s) 160
FaqI GGGAC 1 cut(s) 257
Fnu4HI GCNGC 3 cut(s) 77, 80, 156
Fsp4HI GCNGC 3 cut(s) 77, 80, 156
GluI GCNGC 3 cut(s) 77, 80, 156
HinfI GANTC 1 cut(s) 9
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 126
HpyAV CCTTC 1 cut(s) 139
HpyCH4V TGCA 2 cut(s) 82, 158
HpyF3I CTNAG 4 cut(s) 196, 221, 226, 237
Kzo9I GATC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 233
LpnPI CCDG 2 cut(s) 152, 202
Lsp1109I GCAGC 2 cut(s) 66, 142
MalI GATC 1 cut(s) 128
MboI GATC 1 cut(s) 126
MboII GAAGA 3 cut(s) 80, 155, 223
MluCI AATT 1 cut(s) 267
MlyI GAGTC 1 cut(s) 18
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 3 cut(s) 173, 205, 232
MseI TTAA 1 cut(s) 15
MspA1I CMGCKG 2 cut(s) 79, 200
NdeII GATC 1 cut(s) 126
PkrI GCNGC 3 cut(s) 78, 81, 157
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PstNI CAGNNNCTG 1 cut(s) 79
PvuII CAGCTG 1 cut(s) 200
SaqAI TTAA 1 cut(s) 15
SatI GCNGC 3 cut(s) 77, 80, 156
Sau3AI GATC 1 cut(s) 126
SchI GAGTC 1 cut(s) 18
SetI ASST 6 cut(s) 21, 115, 150, 202, 227, 238
SgeI CNNG 7 cut(s) 17, 32, 42, 151, 179, 201, 288
Sse9I AATT 1 cut(s) 267
SsiI CCGC 1 cut(s) 77
SspI AATATT 1 cut(s) 217
StyI CCWWGG 1 cut(s) 19
TasI AATT 1 cut(s) 267
TauI GCSGC 1 cut(s) 79
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TseI GCWGC 2 cut(s) 79, 155
TspDTI ATGAA 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.