Rroxscaffold_1G00046500

Xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0007023
Physical Location & Seq
Reverse (-)
65712530 .. 65716432
3903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046500.1

Sequence Viewer

Length: 603 bp
ATGCCTTTAATTCTAGACCCTGGTCTCTACTCAGTAAATAAACAAGATGTCTTTTGGGTTACACCCCGGCGAACATTGCCAACTTCCTTTAAATTGTTTACTGGTTCGGCATGGATGGTCCTGTCACGATGGTTTGTTGAGTACTGCATTTGGGGTTGGGACAATCTACCAAGGACCCTTCTCATGTATTACACAAACTTTGTCTCCTCGCCTGAAGGCTACTTTCACACTGTTATATGCAATGTGCCAGAGTTTGCTAAAACTGCAGTCAACCATGATTTGCACTATATTTCTTGGGATATTCCTCCCAAACAGCATCCTCACACCCTTAACATAAGTGACACAAGCAAGATGATTGGAAGTGGTGCTGCCTTTGCCCGGAAATTCAAACACAATGACCCTGCCCTAGATAAGATTGATAAAGAGTTACTTCACAGAAGAAAAGATGGCTTCACTCCTGGTGGTTGGTGTACTGGAAAACCAAAATGCACCAGGGTTGGGAACCCGAACAAGATCAAACCAGGTCAAGGGGCTGAAAGGCTTCGCGCCCTTGTGGATAGGCTGACATTGACAGCTAAGTTTGGTCAAAACCAGTGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

200

Amino Acids

22.88

Weight (kDa)

9.58

Isoelectric Point (pI)

38.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 2 - 118 6.9e-32 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 546
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 234
AfaI GTAC 2 cut(s) 143, 472
AfiI CCNNNNNNNGG 3 cut(s) 378, 498, 527
AgsI TTSAA 1 cut(s) 388
AjnI CCWGG 4 cut(s) 19, 457, 491, 520
AluBI AGCT 1 cut(s) 575
AluI AGCT 1 cut(s) 575
Alw26I GTCTC 2 cut(s) 29, 208
ApeKI GCWGC 1 cut(s) 368
ApoI RAATTY 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 1 cut(s) 548
AspS9I GGNCC 2 cut(s) 118, 174
AsuC2I CCSGG 2 cut(s) 67, 379
AvaII GGWCC 2 cut(s) 118, 174
BbvI GCAGC 1 cut(s) 355
BccI CCATC 3 cut(s) 109, 123, 440
BciT130I CCWGG 4 cut(s) 21, 459, 493, 522
BcnI CCSGG 2 cut(s) 67, 379
BcoDI GTCTC 2 cut(s) 29, 208
BfaI CTAG 2 cut(s) 14, 407
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 1 cut(s) 369
BlsI GCNGC 1 cut(s) 370
BmcAI AGTACT 1 cut(s) 143
Bme1390I CCNGG 6 cut(s) 21, 67, 379, 459, 493, 522
Bme18I GGWCC 2 cut(s) 118, 174
BmgT120I GGNCC 2 cut(s) 118, 174
BmiI GGNNCC 2 cut(s) 176, 503
BmrFI CCNGG 6 cut(s) 21, 67, 379, 459, 493, 522
BmsI GCATC 1 cut(s) 325
BoxI GACNNNNGTC 1 cut(s) 21
BpuMI CCSGG 2 cut(s) 67, 379
BsaI GGTCTC 1 cut(s) 29
BsaJI CCNNGG 4 cut(s) 19, 65, 170, 492
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 3 cut(s) 378, 498, 527
Bse1I ACTGG 3 cut(s) 106, 478, 592
Bse3DI GCAATG 2 cut(s) 74, 247
BseBI CCWGG 4 cut(s) 21, 459, 493, 522
BseDI CCNNGG 4 cut(s) 19, 65, 170, 492
BseGI GGATG 2 cut(s) 120, 316
BseLI CCNNNNNNNGG 3 cut(s) 378, 498, 527
BseMI GCAATG 2 cut(s) 74, 247
BseMII CTCAG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 106, 478, 592
BseRI GAGGAG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 355
Bsh1236I CGCG 1 cut(s) 546
BsiSI CCGG 2 cut(s) 67, 379
BslFI GGGAC 1 cut(s) 173
BslI CCNNNNNNNGG 3 cut(s) 378, 498, 527
BsmAI GTCTC 2 cut(s) 29, 208
BsmFI GGGAC 1 cut(s) 173
Bso31I GGTCTC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 513
BspCNI CTCAG 1 cut(s) 44
BspFNI CGCG 1 cut(s) 546
BspLI GGNNCC 2 cut(s) 176, 503
BspMAI CTGCAG 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 29
BsrDI GCAATG 2 cut(s) 74, 247
BsrI ACTGG 3 cut(s) 106, 478, 592
BssECI CCNNGG 4 cut(s) 19, 65, 170, 492
BssMI GATC 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 170
Bst2UI CCWGG 4 cut(s) 21, 459, 493, 522
Bst4CI ACNGT 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 31, 576
BstF5I GGATG 2 cut(s) 120, 316
BstFNI CGCG 1 cut(s) 546
BstHHI GCGC 1 cut(s) 548
BstKTI GATC 1 cut(s) 516
BstMAI GTCTC 2 cut(s) 29, 208
BstMBI GATC 1 cut(s) 513
BstMWI GCNNNNNNNGC 3 cut(s) 76, 263, 374
BstNI CCWGG 4 cut(s) 21, 459, 493, 522
BstPAI GACNNNNGTC 1 cut(s) 21
BstSCI CCNGG 6 cut(s) 19, 65, 377, 457, 491, 520
BstSFI CTRYAG 1 cut(s) 264
BstUI CGCG 1 cut(s) 546
BstV1I GCAGC 1 cut(s) 355
BtsCI GGATG 2 cut(s) 120, 316
BtsIMutI CAGTG 2 cut(s) 228, 599
CfoI GCGC 1 cut(s) 548
Cfr13I GGNCC 2 cut(s) 118, 174
CsiI ACCWGGT 1 cut(s) 520
Csp6I GTAC 2 cut(s) 142, 471
CviAII CATG 3 cut(s) 111, 184, 275
CviJI RGCY 6 cut(s) 219, 450, 533, 541, 562, 575
CviKI_1 RGCY 6 cut(s) 219, 450, 533, 541, 562, 575
CviQI GTAC 2 cut(s) 142, 471
DdeI CTNAG 2 cut(s) 31, 576
DpnI GATC 1 cut(s) 515
DpnII GATC 1 cut(s) 513
DraI TTTAAA 1 cut(s) 91
Eco130I CCWWGG 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 29
Eco47I GGWCC 2 cut(s) 118, 174
Eco57I CTGAAG 1 cut(s) 234
EcoO109I RGGNCCY 1 cut(s) 174
EcoRII CCWGG 4 cut(s) 19, 457, 491, 520
EcoT14I CCWWGG 1 cut(s) 170
ErhI CCWWGG 1 cut(s) 170
FaeI CATG 3 cut(s) 114, 187, 278
FaiI YATR 7 cut(s) 112, 185, 236, 238, 276, 288, 335
FalI AAGNNNNNCTT 2 cut(s) 414, 446
FaqI GGGAC 1 cut(s) 173
FatI CATG 3 cut(s) 110, 183, 274
Fnu4HI GCNGC 1 cut(s) 369
FokI GGATG 2 cut(s) 127, 303
Fsp4HI GCNGC 1 cut(s) 369
FspBI CTAG 2 cut(s) 14, 407
GlaI GCGC 1 cut(s) 547
GluI GCNGC 1 cut(s) 369
HapII CCGG 2 cut(s) 67, 379
HhaI GCGC 1 cut(s) 548
Hin1II CATG 3 cut(s) 114, 187, 278
Hin6I GCGC 1 cut(s) 546
HinP1I GCGC 1 cut(s) 546
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HpaII CCGG 2 cut(s) 67, 379
Hpy166II GTNNAC 3 cut(s) 99, 271, 471
Hpy188III TCNNGA 2 cut(s) 14, 126
Hpy8I GTNNAC 3 cut(s) 99, 271, 471
HpyAV CCTTC 2 cut(s) 188, 209
HpyCH4III ACNGT 1 cut(s) 232
HpyCH4V TGCA 5 cut(s) 147, 240, 266, 283, 489
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 263, 374
HpyF3I CTNAG 2 cut(s) 31, 576
Hsp92II CATG 3 cut(s) 114, 187, 278
HspAI GCGC 1 cut(s) 546
Kzo9I GATC 1 cut(s) 513
Lsp1109I GCAGC 1 cut(s) 355
LweI GCATC 1 cut(s) 325
MabI ACCWGGT 1 cut(s) 520
MaeI CTAG 2 cut(s) 14, 407
MaeIII GTNAC 4 cut(s) 58, 123, 338, 426
MalI GATC 1 cut(s) 515
MboI GATC 1 cut(s) 513
MboII GAAGA 1 cut(s) 450
MluCI AATT 3 cut(s) 9, 92, 383
MnlI CCTC 3 cut(s) 217, 315, 330
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 3 cut(s) 8, 90, 330
MspI CCGG 2 cut(s) 67, 379
MspR9I CCNGG 6 cut(s) 21, 67, 379, 459, 493, 522
MvaI CCWGG 4 cut(s) 21, 459, 493, 522
MvnI CGCG 1 cut(s) 546
MwoI GCNNNNNNNGC 3 cut(s) 76, 263, 374
NciI CCSGG 2 cut(s) 67, 379
NdeII GATC 1 cut(s) 513
NlaIII CATG 3 cut(s) 114, 187, 278
NlaIV GGNNCC 2 cut(s) 176, 503
NmuCI GTSAC 2 cut(s) 123, 338
PdmI GAANNNNTTC 1 cut(s) 540
PkrI GCNGC 1 cut(s) 370
PpuMI RGGWCCY 1 cut(s) 174
PshAI GACNNNNGTC 1 cut(s) 21
Psp5II RGGWCCY 1 cut(s) 174
Psp6I CCWGG 4 cut(s) 19, 457, 491, 520
PspGI CCWGG 4 cut(s) 19, 457, 491, 520
PspN4I GGNNCC 2 cut(s) 176, 503
PspPI GGNCC 2 cut(s) 118, 174
PspPPI RGGWCCY 1 cut(s) 174
PstI CTGCAG 1 cut(s) 268
RsaI GTAC 2 cut(s) 143, 472
RsaNI GTAC 2 cut(s) 142, 471
SaqAI TTAA 3 cut(s) 8, 90, 330
SatI GCNGC 1 cut(s) 369
Sau3AI GATC 1 cut(s) 513
Sau96I GGNCC 2 cut(s) 118, 174
ScaI AGTACT 1 cut(s) 143
ScrFI CCNGG 6 cut(s) 21, 67, 379, 459, 493, 522
SetI ASST 2 cut(s) 526, 577
SexAI ACCWGGT 1 cut(s) 520
SfaNI GCATC 1 cut(s) 325
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 118, 174
Sse9I AATT 3 cut(s) 9, 92, 383
SspMI CTAG 2 cut(s) 14, 407
StyD4I CCNGG 6 cut(s) 19, 65, 377, 457, 491, 520
StyI CCWWGG 1 cut(s) 170
TaaI ACNGT 1 cut(s) 232
TasI AATT 3 cut(s) 9, 92, 383
TatI WGTACW 2 cut(s) 141, 470
Tru1I TTAA 3 cut(s) 8, 90, 330
Tru9I TTAA 3 cut(s) 8, 90, 330
TscAI CASTG 2 cut(s) 235, 599
TseFI GTSAC 2 cut(s) 123, 338
TseI GCWGC 1 cut(s) 368
Tsp45I GTSAC 2 cut(s) 123, 338
TspRI CASTG 2 cut(s) 235, 599
VpaK11BI GGWCC 2 cut(s) 118, 174
XapI RAATTY 1 cut(s) 383
XbaI TCTAGA 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 2 cut(s) 14, 407
ZrmI AGTACT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.