Prupe.4G180700_v2.0.a1

Xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0007023
Physical Location & Seq
Forward (+)
10718283 .. 10722430
4148 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G180700.2

Sequence Viewer

Length: 1266 bp
ATGGGTTCTGCAAACATGGAGAAGAAATGGCTATTCCCTCTTGTCATAAGCTCTGTCATATGCATATTCCTTCTAGCCACTTCCTTGAACTTGGGTCTTGTCTCTTCACGACATGCAATCAATTCAATCTTCTCATTTTTCCCATCTCGGGTACTAGCAAACCAAAGTAGTCTAGCTTTTGCTGAGAATATAGTTTCACAAGGTCCACCCCCTCCTTCAGTACCAGCAATTCCTCGTTTTGCCTATCTAATTTCCGGGTCAAAAGGGGATTTGGAAAAGCTTTGGAGAACTCTTCAAGCACTGTACCATCCGCTGAATCAGTATGTTCTTCATTTAGACCTTGAGTCACCAGTAGCAGAAAGATTGGAGCTTGCTTCACGAGTGGACAATGAGACGATGTTTAATACAGTTGGGAATGTATTTGTGATTAAGAAAGCTAATATGGTAACTTACAGAGGACCGACCATGGTTGCTAATACTCTTCATGCCTGCGCAATTCTTCTCAGGAGGAGTAAGGATTGGGATTGGTTTATCAACCTTAGCGCCTCAGATTATCCTCTTGTTACTCAAGATGATCTTTTTCACACCTTTTCACCTTTAAATCGAAATCTCAATTTCATTGAGCATACAAGCCAACTTGGTTGGAAGGAGGAAAAACGAGCAATGCCTTTAATTCTAGATCCTGGTCTCTACTCATCAAAAAAACAGGATGTATTTTGGGTTACGCCCCGCCGAACATTACCTACTTCATTTAAATTGTTTACTGGTTCAGCATGGATGGTCTTGTCACGGTGGTTTGTAGAGTACTGCGTTTGGGGTTGGGACAATCTACCGAGGACCCTTCTCATGTACTACACAAACTTTGTTTCTTCGCCTGAAGGCTACTTTCACACTGTCATATGCAATGAGCCAGAGTTTGCTAAAACTGCAGTCAACCATGACTTGCACTATATTTCTTGGGATATTCCTCCAAAACAGCATCCTCATACCCTCAACATTAATGACACAAACAAGATGATTGCAAGTGGTGCTGCCTTTGCTCGGAAATTCAAATGCGATGACCCTGCCCTAGACAAGATCGATAAGGATTTACTTCGTCGAAGAAAAGGGAGCTTCACTCCTGGTGGTTGGTGTGCTGGCAAACCCAAATGCTCCAGGGTTGGGAACCCAAACAAGATCAAACCAGGTCCAGGGGCCGAAAGGCTTCGCCGCCTTGTGGGTAGGCTTACTTTGACAGCTAAGTTTGGTCAAAACCAATGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

422

Amino Acids

47.75

Weight (kDa)

9.5

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 493
AciI CCGC 3 cut(s) 311, 730, 1210
AclWI GGATC 1 cut(s) 674
AcsI RAATTY 1 cut(s) 1046
AcuI CTGAAG 2 cut(s) 201, 897
AfaI GTAC 5 cut(s) 153, 222, 305, 806, 851
AfiI CCNNNNNNNGG 5 cut(s) 148, 1041, 1161, 1190, 1216
AgsI TTSAA 4 cut(s) 88, 126, 296, 1051
AhdI GACNNNNNGTC 1 cut(s) 343
AjnI CCWGG 5 cut(s) 682, 1120, 1154, 1183, 1189
AluBI AGCT 7 cut(s) 51, 176, 280, 370, 437, 1113, 1238
AluI AGCT 7 cut(s) 51, 176, 280, 370, 437, 1113, 1238
Alw26I GTCTC 3 cut(s) 106, 386, 692
AlwI GGATC 1 cut(s) 674
Ama87I CYCGRG 1 cut(s) 147
AoxI GGCC 1 cut(s) 1194
ApeKI GCWGC 1 cut(s) 1031
ApoI RAATTY 1 cut(s) 1046
AseI ATTAAT 1 cut(s) 999
Asp700I GAANNNNTTC 1 cut(s) 1203
AspLEI GCGC 2 cut(s) 494, 545
AspS9I GGNCC 5 cut(s) 203, 458, 837, 1187, 1194
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 339, 585
AvaI CYCGRG 1 cut(s) 147
AvaII GGWCC 4 cut(s) 203, 458, 837, 1187
BauI CACGAG 1 cut(s) 378
BbvI GCAGC 1 cut(s) 1018
BccI CCATC 3 cut(s) 151, 315, 772
BcgI CGANNNNNNTGC 2 cut(s) 1046, 1080
BciT130I CCWGG 5 cut(s) 684, 1122, 1156, 1185, 1191
BcnI CCSGG 1 cut(s) 256
BcoDI GTCTC 3 cut(s) 106, 386, 692
BfaI CTAG 5 cut(s) 74, 155, 173, 677, 1070
BfmI CTRYAG 1 cut(s) 927
BfoI RGCGCY 1 cut(s) 546
BisI GCNGC 2 cut(s) 1032, 1210
BlsI GCNGC 2 cut(s) 1033, 1211
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 6 cut(s) 256, 684, 1122, 1156, 1185, 1191
Bme18I GGWCC 4 cut(s) 203, 458, 837, 1187
BmeRI GACNNNNNGTC 1 cut(s) 343
BmeT110I CYCGRG 1 cut(s) 147
BmgT120I GGNCC 5 cut(s) 203, 458, 837, 1187, 1194
BmiI GGNNCC 3 cut(s) 839, 1166, 1195
BmrFI CCNGG 6 cut(s) 256, 684, 1122, 1156, 1185, 1191
BmsI GCATC 1 cut(s) 988
BplI GAGNNNNNCTC 2 cut(s) 1102, 1134
BpmI CTGGAG 1 cut(s) 1138
Bpu10I CCTNAGC 1 cut(s) 539
BpuEI CTTGAG 2 cut(s) 362, 552
BpuMI CCSGG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 1080
BsaI GGTCTC 1 cut(s) 692
BsaJI CCNNGG 4 cut(s) 465, 833, 1155, 1190
Bsc4I CCNNNNNNNGG 5 cut(s) 148, 1041, 1161, 1190, 1216
Bse1I ACTGG 2 cut(s) 350, 769
Bse3DI GCAATG 2 cut(s) 669, 910
BseBI CCWGG 5 cut(s) 684, 1122, 1156, 1185, 1191
BseCI ATCGAT 1 cut(s) 1080
BseDI CCNNGG 4 cut(s) 465, 833, 1155, 1190
BseGI GGATG 4 cut(s) 307, 715, 783, 979
BseLI CCNNNNNNNGG 5 cut(s) 148, 1041, 1161, 1190, 1216
BseMI GCAATG 2 cut(s) 669, 910
BseMII CTCAG 3 cut(s) 174, 517, 561
BseNI ACTGG 2 cut(s) 350, 769
BseRI GAGGAG 1 cut(s) 523
BseXI GCAGC 1 cut(s) 1018
BshFI GGCC 1 cut(s) 1196
BshVI ATCGAT 1 cut(s) 1080
BsiHKCI CYCGRG 1 cut(s) 147
BsiSI CCGG 1 cut(s) 255
BslFI GGGAC 1 cut(s) 836
BslI CCNNNNNNNGG 5 cut(s) 148, 1041, 1161, 1190, 1216
BsmAI GTCTC 3 cut(s) 106, 386, 692
BsmBI CGTCTC 1 cut(s) 386
BsmFI GGGAC 1 cut(s) 836
BsnI GGCC 1 cut(s) 1196
Bso31I GGTCTC 1 cut(s) 692
BsoBI CYCGRG 1 cut(s) 147
Bsp143I GATC 4 cut(s) 574, 679, 1077, 1176
Bsp19I CCATGG 1 cut(s) 465
BspACI CCGC 3 cut(s) 311, 730, 1210
BspANI GGCC 1 cut(s) 1196
BspCNI CTCAG 3 cut(s) 175, 516, 560
BspDI ATCGAT 1 cut(s) 1080
BspLI GGNNCC 3 cut(s) 839, 1166, 1195
BspMAI CTGCAG 1 cut(s) 931
BspPI GGATC 1 cut(s) 674
BspTNI GGTCTC 1 cut(s) 692
BsrDI GCAATG 2 cut(s) 669, 910
BsrI ACTGG 2 cut(s) 350, 769
BssECI CCNNGG 4 cut(s) 465, 833, 1155, 1190
BssMI GATC 4 cut(s) 574, 679, 1077, 1176
BssSI CACGAG 1 cut(s) 378
BssT1I CCWWGG 1 cut(s) 465
Bst2BI CACGAG 1 cut(s) 378
Bst2UI CCWGG 5 cut(s) 684, 1122, 1156, 1185, 1191
Bst4CI ACNGT 4 cut(s) 303, 409, 792, 895
Bst6I CTCTTC 3 cut(s) 109, 297, 486
BstAPI GCANNNNNTGC 1 cut(s) 1028
BstC8I GCNNGC 3 cut(s) 372, 490, 1138
BstDEI CTNAG 5 cut(s) 183, 503, 539, 547, 1239
BstDSI CCRYGG 1 cut(s) 465
BstF5I GGATG 4 cut(s) 307, 715, 783, 979
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 2 cut(s) 494, 545
BstKTI GATC 4 cut(s) 577, 682, 1080, 1179
BstMAI GTCTC 3 cut(s) 106, 386, 692
BstMBI GATC 4 cut(s) 574, 679, 1077, 1176
BstMWI GCNNNNNNNGC 3 cut(s) 926, 1028, 1037
BstNI CCWGG 5 cut(s) 684, 1122, 1156, 1185, 1191
BstNSI RCATGY 1 cut(s) 116
BstSCI CCNGG 6 cut(s) 254, 682, 1120, 1154, 1183, 1189
BstSFI CTRYAG 1 cut(s) 927
BstV1I GCAGC 1 cut(s) 1018
BstX2I RGATCY 1 cut(s) 679
BstYI RGATCY 1 cut(s) 679
Bsu15I ATCGAT 1 cut(s) 1080
BsuRI GGCC 1 cut(s) 1196
BsuTUI ATCGAT 1 cut(s) 1080
BtgI CCRYGG 1 cut(s) 465
BtgZI GCGATG 1 cut(s) 1071
BtsCI GGATG 4 cut(s) 307, 715, 783, 979
BtsIMutI CAGTG 2 cut(s) 299, 891
Cac8I GCNNGC 3 cut(s) 372, 490, 1138
CfoI GCGC 2 cut(s) 494, 545
Cfr13I GGNCC 5 cut(s) 203, 458, 837, 1187, 1194
ClaI ATCGAT 1 cut(s) 1080
CsiI ACCWGGT 1 cut(s) 1183
Csp6I GTAC 5 cut(s) 152, 221, 304, 805, 850
CviAII CATG 7 cut(s) 16, 113, 466, 485, 774, 847, 938
CviQI GTAC 5 cut(s) 152, 221, 304, 805, 850
DdeI CTNAG 5 cut(s) 183, 503, 539, 547, 1239
DpnI GATC 4 cut(s) 576, 681, 1079, 1178
DpnII GATC 4 cut(s) 574, 679, 1077, 1176
DraI TTTAAA 2 cut(s) 600, 754
DriI GACNNNNNGTC 1 cut(s) 343
Eam1104I CTCTTC 3 cut(s) 109, 297, 486
Eam1105I GACNNNNNGTC 1 cut(s) 343
EarI CTCTTC 3 cut(s) 109, 297, 486
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 692
Eco47I GGWCC 4 cut(s) 203, 458, 837, 1187
Eco57I CTGAAG 2 cut(s) 201, 897
Eco88I CYCGRG 1 cut(s) 147
EcoO109I RGGNCCY 1 cut(s) 837
EcoRII CCWGG 5 cut(s) 682, 1120, 1154, 1183, 1189
EcoT14I CCWWGG 1 cut(s) 465
EcoT22I ATGCAT 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 465
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 7 cut(s) 19, 116, 469, 488, 777, 850, 941
FalI AAGNNNNNCTT 2 cut(s) 561, 593
FaqI GGGAC 1 cut(s) 836
FatI CATG 7 cut(s) 15, 112, 465, 484, 773, 846, 937
FauI CCCGC 1 cut(s) 737
FauNDI CATATG 2 cut(s) 59, 899
Fnu4HI GCNGC 2 cut(s) 1032, 1210
FokI GGATG 4 cut(s) 294, 722, 790, 966
Fsp4HI GCNGC 2 cut(s) 1032, 1210
FspBI CTAG 5 cut(s) 74, 155, 173, 677, 1070
FspI TGCGCA 1 cut(s) 493
GlaI GCGC 2 cut(s) 493, 544
GluI GCNGC 2 cut(s) 1032, 1210
GsuI CTGGAG 1 cut(s) 1138
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 1 cut(s) 1196
HapII CCGG 1 cut(s) 255
HhaI GCGC 2 cut(s) 494, 545
Hin1II CATG 7 cut(s) 19, 116, 469, 488, 777, 850, 941
Hin6I GCGC 2 cut(s) 492, 543
HinP1I GCGC 2 cut(s) 492, 543
HincII GTYRAC 1 cut(s) 934
HindII GTYRAC 1 cut(s) 934
HindIII AAGCTT 1 cut(s) 278
HinfI GANTC 2 cut(s) 316, 344
HpaII CCGG 1 cut(s) 255
HphI GGTGA 2 cut(s) 339, 585
Hpy166II GTNNAC 4 cut(s) 206, 385, 762, 934
Hpy188I TCNGA 2 cut(s) 550, 1044
Hpy188III TCNNGA 5 cut(s) 108, 378, 505, 569, 677
Hpy8I GTNNAC 4 cut(s) 206, 385, 762, 934
Hpy99I CGWCG 1 cut(s) 1101
HpyAV CCTTC 5 cut(s) 80, 225, 640, 851, 872
HpyCH4III ACNGT 4 cut(s) 303, 409, 792, 895
HpyCH4V TGCA 7 cut(s) 11, 63, 116, 903, 929, 946, 1022
HpyF10VI GCNNNNNNNGC 3 cut(s) 926, 1028, 1037
HpyF3I CTNAG 5 cut(s) 183, 503, 539, 547, 1239
Hsp92II CATG 7 cut(s) 19, 116, 469, 488, 777, 850, 941
HspAI GCGC 2 cut(s) 492, 543
Kzo9I GATC 4 cut(s) 574, 679, 1077, 1176
LmnI GCTCC 3 cut(s) 367, 1110, 1157
Lsp1109I GCAGC 1 cut(s) 1018
LweI GCATC 1 cut(s) 988
MabI ACCWGGT 1 cut(s) 1183
MaeI CTAG 5 cut(s) 74, 155, 173, 677, 1070
MaeIII GTNAC 5 cut(s) 345, 445, 562, 721, 786
MalI GATC 4 cut(s) 576, 681, 1079, 1178
MboI GATC 4 cut(s) 574, 679, 1077, 1176
MboII GAAGA 9 cut(s) 34, 96, 121, 284, 320, 473, 491, 861, 1113
MflI RGATCY 1 cut(s) 679
MluCI AATT 8 cut(s) 121, 228, 249, 495, 613, 672, 755, 1046
MlyI GAGTC 1 cut(s) 353
MmeI TCCRAC 1 cut(s) 623
Mph1103I ATGCAT 1 cut(s) 65
MroXI GAANNNNTTC 1 cut(s) 1203
MseI TTAA 6 cut(s) 402, 429, 599, 671, 753, 999
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 6 cut(s) 256, 684, 1122, 1156, 1185, 1191
MvaI CCWGG 5 cut(s) 684, 1122, 1156, 1185, 1191
MwoI GCNNNNNNNGC 3 cut(s) 926, 1028, 1037
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 1 cut(s) 465
NdeI CATATG 2 cut(s) 59, 899
NdeII GATC 4 cut(s) 574, 679, 1077, 1176
NlaIII CATG 7 cut(s) 19, 116, 469, 488, 777, 850, 941
NlaIV GGNNCC 3 cut(s) 839, 1166, 1195
NmuCI GTSAC 2 cut(s) 345, 786
NsbI TGCGCA 1 cut(s) 493
NsiI ATGCAT 1 cut(s) 65
NspI RCATGY 1 cut(s) 116
PdmI GAANNNNTTC 1 cut(s) 1203
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 2 cut(s) 1033, 1211
PleI GAGTC 1 cut(s) 352
PpsI GAGTC 1 cut(s) 352
PpuMI RGGWCCY 1 cut(s) 837
PshBI ATTAAT 1 cut(s) 999
Psp5II RGGWCCY 1 cut(s) 837
Psp6I CCWGG 5 cut(s) 682, 1120, 1154, 1183, 1189
PspGI CCWGG 5 cut(s) 682, 1120, 1154, 1183, 1189
PspN4I GGNNCC 3 cut(s) 839, 1166, 1195
PspPI GGNCC 5 cut(s) 203, 458, 837, 1187, 1194
PspPPI RGGWCCY 1 cut(s) 837
PsrI GAACNNNNNNTAC 2 cut(s) 727, 759
PstI CTGCAG 1 cut(s) 931
PsuI RGATCY 1 cut(s) 679
RsaI GTAC 5 cut(s) 153, 222, 305, 806, 851
RsaNI GTAC 5 cut(s) 152, 221, 304, 805, 850
SaqAI TTAA 6 cut(s) 402, 429, 599, 671, 753, 999
SatI GCNGC 2 cut(s) 1032, 1210
Sau3AI GATC 4 cut(s) 574, 679, 1077, 1176
Sau96I GGNCC 5 cut(s) 203, 458, 837, 1187, 1194
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 1 cut(s) 353
ScrFI CCNGG 6 cut(s) 256, 684, 1122, 1156, 1185, 1191
SexAI ACCWGGT 1 cut(s) 1183
SfaNI GCATC 1 cut(s) 988
SfcI CTRYAG 1 cut(s) 927
SinI GGWCC 4 cut(s) 203, 458, 837, 1187
SmiI ATTTAAAT 1 cut(s) 754
SmlI CTYRAG 2 cut(s) 341, 567
SmoI CTYRAG 2 cut(s) 341, 567
Sse9I AATT 8 cut(s) 121, 228, 249, 495, 613, 672, 755, 1046
SsiI CCGC 3 cut(s) 311, 730, 1210
SspMI CTAG 5 cut(s) 74, 155, 173, 677, 1070
StyD4I CCNGG 6 cut(s) 254, 682, 1120, 1154, 1183, 1189
StyI CCWWGG 1 cut(s) 465
SwaI ATTTAAAT 1 cut(s) 754
TaaI ACNGT 4 cut(s) 303, 409, 792, 895
TaqI TCGA 3 cut(s) 604, 1080, 1099
TaqII GACCGA 1 cut(s) 475
TasI AATT 8 cut(s) 121, 228, 249, 495, 613, 672, 755, 1046
TatI WGTACW 2 cut(s) 804, 849
TauI GCSGC 1 cut(s) 1212
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 6 cut(s) 402, 429, 599, 671, 753, 999
Tru9I TTAA 6 cut(s) 402, 429, 599, 671, 753, 999
TscAI CASTG 2 cut(s) 306, 898
TseFI GTSAC 2 cut(s) 345, 786
TseI GCWGC 1 cut(s) 1031
Tsp45I GTSAC 2 cut(s) 345, 786
TspDTI ATGAA 4 cut(s) 320, 473, 607, 738
TspRI CASTG 2 cut(s) 306, 898
VpaK11BI GGWCC 4 cut(s) 203, 458, 837, 1187
VspI ATTAAT 1 cut(s) 999
XapI RAATTY 1 cut(s) 1046
XbaI TCTAGA 1 cut(s) 676
XceI RCATGY 1 cut(s) 116
XmnI GAANNNNTTC 1 cut(s) 1203
XspI CTAG 5 cut(s) 74, 155, 173, 677, 1070
ZrmI AGTACT 1 cut(s) 806
Zsp2I ATGCAT 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.