MD11G1247600.v1.1

Xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0007023
Physical Location & Seq
Reverse (-)
35929632 .. 35933266
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1247600.v1.1.491

Sequence Viewer

Length: 1263 bp
ATGGGGTCTGCAGTGGAGAAGAAATGGCTAGTCCCTCTTGTCATAAGCTCTGTCATCTGCATATTCCTTCTAGCTACTTCCTTGAACTCGGGTCTCGTCTCTTCACGAAACGCAATCAATTCGATCTTTTCCCTTTTACCATCTAGGGTAGTAACAAATCAATCTAGTCCAGCTTTTGCTGAGACAATAATTTCACAAAGTCCACCCCCTCCTCCGCTACCAGCGATTCCTCGCTTTGCTTATCTAATTTCCGGATCAAAAGGAGATTTGGAAAAGCTTTGGAGAACTCTCAAAGCGCTTTACCATCCGTTGAATCAATATGTTCTTCATTTAGACCTTGAGTCTCCGGTAGCAGAAAGATTGGAGCTTGCTTCGCGAGTGGACAACGAGACTCTCTTTAATACAGTTGGGAATGTGTTTGTGATCAAGAAAGCTAATATGGTAACTTACAGAGGGCCAACAATGGTTGCTAATACTCTTCATGCCTGCGCAATTCTTCTCAGGAGGAGTAAGGATTGGGATTGGTTTATCAATCTCAGCGCCTCGGATTATCCACTTGTTACTCAAGATGATCTTATTCACACGTTTTCAACTTTAAACCGAAATCTGAATTTCATTGAGCACACAAGCCAACTTGGCTGGAAAGAGGAAAAACGAGCAATGCCCTTGATTTTAGACCCTGGTCTCTACTCATCTAAAAAACAGGATGTTTTTTGGGTTACACCGAGGCGAACATTGCCCACTGCATTTAAATTGTTTACTGGTTCGGCATGGATGGTCTTATCACGCTGGTTCGTCGAGTATTGTGTTTGGGGTTGGGACAATCTTCCGAGGACCCTTCTCATGTATTACACAAACTTTGTTTCTTCACCGGAAGGCTACTTTCACACTGTTATATGCAATGAGCCGGAGTTTGCCAAAACTGCCGTCAACCATGATTTGCACTATATTTCTTGGGACATTCCTCCCAAGCAGCATCCCCACACCCTCAACATTAATGACACAAACAAGATGACTGCAAGCGGTGCTGCCTTTGCTCGGAAGTTCAGACACGATGACCCTGTCCTGGACAGGATCGATAAGGAATTACTTCACCGAAGAAAAGACAGCTTCACTCCCGGCGGCTGGTGTGCTGGCAAACCCAAATGCTCCAGGGTTGGGAACCCGAACAAGATCAAACCAGGTCCGGGCGCCGACAGGCTTCGCCACCTCGTGAGTAGGCTTGCCTTGACAGCTAAGTTTGGTCAAAACCAGTGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

421

Amino Acids

47.56

Weight (kDa)

9.44

Isoelectric Point (pI)

43.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 79 - 338 4.7e-83 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 1190
AccII CGCG 1 cut(s) 376
AccIII TCCGGA 1 cut(s) 251
AciI CCGC 3 cut(s) 215, 1023, 1122
AclWI GGATC 2 cut(s) 262, 1082
AcsI RAATTY 1 cut(s) 610
AcyI GRCGYC 1 cut(s) 1191
AdeI CACNNNGTG 1 cut(s) 1213
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 5 cut(s) 1038, 1066, 1125, 1158, 1187
AflIII ACRYGT 1 cut(s) 582
AgsI TTSAA 3 cut(s) 85, 313, 591
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 4 cut(s) 679, 1065, 1151, 1180
AluBI AGCT 8 cut(s) 48, 74, 173, 277, 367, 434, 1110, 1235
AluI AGCT 8 cut(s) 48, 74, 173, 277, 367, 434, 1110, 1235
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 6 cut(s) 98, 103, 176, 348, 383, 689
AlwI GGATC 2 cut(s) 262, 1082
Ama87I CYCGRG 1 cut(s) 88
Aor13HI TCCGGA 1 cut(s) 251
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 1 cut(s) 455
ApeKI GCWGC 2 cut(s) 973, 1028
ApoI RAATTY 1 cut(s) 610
ArsI GACNNNNNNTTYG 2 cut(s) 912, 944
AseI ATTAAT 1 cut(s) 996
Asp700I GAANNNNTTC 1 cut(s) 1089
AspLEI GCGC 4 cut(s) 298, 491, 542, 1193
AspS9I GGNCC 3 cut(s) 455, 834, 1184
AsuC2I CCSGG 2 cut(s) 1119, 1188
AsuHPI GGTGA 2 cut(s) 861, 1085
AvaI CYCGRG 1 cut(s) 88
AvaII GGWCC 2 cut(s) 834, 1184
BanI GGYRCC 1 cut(s) 1190
BauI CACGAG 1 cut(s) 1211
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 985, 1015
BccI CCATC 3 cut(s) 148, 312, 769
BceAI ACGGC 1 cut(s) 911
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 4 cut(s) 681, 1067, 1153, 1182
BclI TGATCA 1 cut(s) 423
BcnI CCSGG 2 cut(s) 1119, 1188
BcoDI GTCTC 6 cut(s) 98, 103, 176, 348, 383, 689
BfaI CTAG 4 cut(s) 29, 71, 144, 165
BfmI CTRYAG 1 cut(s) 9
BfoI RGCGCY 3 cut(s) 299, 543, 1194
BglI GCCNNNNNGGC 1 cut(s) 636
BisI GCNGC 3 cut(s) 974, 1029, 1123
BlsI GCNGC 3 cut(s) 975, 1030, 1124
Bme1390I CCNGG 6 cut(s) 681, 1067, 1119, 1153, 1182, 1188
Bme18I GGWCC 2 cut(s) 834, 1184
BmeRI GACNNNNNGTC 1 cut(s) 340
BmeT110I CYCGRG 1 cut(s) 88
BmgT120I GGNCC 3 cut(s) 455, 834, 1184
BmiI GGNNCC 3 cut(s) 836, 1163, 1192
BmrFI CCNGG 6 cut(s) 681, 1067, 1119, 1153, 1182, 1188
BmsI GCATC 1 cut(s) 985
BoxI GACNNNNGTC 1 cut(s) 681
BpmI CTGGAG 1 cut(s) 1135
BpuEI CTTGAG 2 cut(s) 359, 549
BpuMI CCSGG 2 cut(s) 1119, 1188
Bsa29I ATCGAT 1 cut(s) 1077
BsaHI GRCGYC 1 cut(s) 1191
BsaI GGTCTC 2 cut(s) 98, 689
BsaJI CCNNGG 5 cut(s) 543, 679, 725, 830, 1152
BsaWI WCCGGW 3 cut(s) 251, 346, 871
Bsc4I CCNNNNNNNGG 5 cut(s) 1038, 1066, 1125, 1158, 1187
Bse1I ACTGG 2 cut(s) 766, 1252
Bse3DI GCAATG 3 cut(s) 666, 734, 907
BseAI TCCGGA 1 cut(s) 251
BseBI CCWGG 4 cut(s) 681, 1067, 1153, 1182
BseCI ATCGAT 1 cut(s) 1077
BseDI CCNNGG 5 cut(s) 543, 679, 725, 830, 1152
BseGI GGATG 4 cut(s) 304, 712, 780, 976
BseLI CCNNNNNNNGG 5 cut(s) 1038, 1066, 1125, 1158, 1187
BseMI GCAATG 3 cut(s) 666, 734, 907
BseMII CTCAG 3 cut(s) 171, 514, 550
BseNI ACTGG 2 cut(s) 766, 1252
BseRI GAGGAG 2 cut(s) 201, 520
BseXI GCAGC 2 cut(s) 985, 1015
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 457
BshNI GGYRCC 1 cut(s) 1190
BshVI ATCGAT 1 cut(s) 1077
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 88
BsiSI CCGG 6 cut(s) 252, 347, 872, 908, 1119, 1187
BslFI GGGAC 3 cut(s) 17, 833, 971
BslI CCNNNNNNNGG 5 cut(s) 1038, 1066, 1125, 1158, 1187
BsmAI GTCTC 6 cut(s) 98, 103, 176, 348, 383, 689
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 3 cut(s) 17, 833, 971
BsnI GGCC 1 cut(s) 457
Bso31I GGTCTC 2 cut(s) 98, 689
BsoBI CYCGRG 1 cut(s) 88
Bsp1286I GDGCHC 1 cut(s) 624
Bsp13I TCCGGA 1 cut(s) 251
Bsp143I GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
Bsp68I TCGCGA 1 cut(s) 376
BspACI CCGC 3 cut(s) 215, 1023, 1122
BspANI GGCC 1 cut(s) 457
BspCNI CTCAG 3 cut(s) 172, 513, 549
BspDI ATCGAT 1 cut(s) 1077
BspEI TCCGGA 1 cut(s) 251
BspFNI CGCG 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 836, 1163, 1192
BspMAI CTGCAG 1 cut(s) 13
BspPI GGATC 2 cut(s) 262, 1082
BspT107I GGYRCC 1 cut(s) 1190
BspTNI GGTCTC 2 cut(s) 98, 689
BsrDI GCAATG 3 cut(s) 666, 734, 907
BsrI ACTGG 2 cut(s) 766, 1252
BssECI CCNNGG 5 cut(s) 543, 679, 725, 830, 1152
BssMI GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
BssNI GRCGYC 1 cut(s) 1191
BssSI CACGAG 1 cut(s) 1211
Bst2BI CACGAG 1 cut(s) 1211
Bst2UI CCWGG 4 cut(s) 681, 1067, 1153, 1182
Bst4CI ACNGT 2 cut(s) 406, 892
Bst6I CTCTTC 2 cut(s) 106, 483
BstACI GRCGYC 1 cut(s) 1191
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstC8I GCNNGC 5 cut(s) 369, 487, 1021, 1135, 1224
BstDEI CTNAG 4 cut(s) 180, 500, 536, 1236
BstF5I GGATG 4 cut(s) 304, 712, 780, 976
BstFNI CGCG 1 cut(s) 376
BstH2I RGCGCY 3 cut(s) 299, 543, 1194
BstHHI GCGC 4 cut(s) 298, 491, 542, 1193
BstKTI GATC 6 cut(s) 126, 257, 426, 574, 1077, 1176
BstMAI GTCTC 6 cut(s) 98, 103, 176, 348, 383, 689
BstMBI GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
BstMWI GCNNNNNNNGC 7 cut(s) 373, 636, 736, 923, 1025, 1034, 1232
BstNI CCWGG 4 cut(s) 681, 1067, 1153, 1182
BstPAI GACNNNNGTC 1 cut(s) 681
BstSCI CCNGG 6 cut(s) 679, 1065, 1117, 1151, 1180, 1186
BstSFI CTRYAG 1 cut(s) 9
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 985, 1015
Bsu15I ATCGAT 1 cut(s) 1077
BsuRI GGCC 1 cut(s) 457
BsuTUI ATCGAT 1 cut(s) 1077
BtsCI GGATG 4 cut(s) 304, 712, 780, 976
BtsI GCAGTG 2 cut(s) 18, 741
BtsIMutI CAGTG 4 cut(s) 18, 741, 888, 1259
BtuMI TCGCGA 1 cut(s) 376
Cac8I GCNNGC 5 cut(s) 369, 487, 1021, 1135, 1224
CfoI GCGC 4 cut(s) 298, 491, 542, 1193
Cfr13I GGNCC 3 cut(s) 455, 834, 1184
ClaI ATCGAT 1 cut(s) 1077
CsiI ACCWGGT 1 cut(s) 1180
CviAII CATG 4 cut(s) 482, 771, 844, 935
DdeI CTNAG 4 cut(s) 180, 500, 536, 1236
DinI GGCGCC 1 cut(s) 1192
DpnI GATC 6 cut(s) 125, 256, 425, 573, 1076, 1175
DpnII GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
DraI TTTAAA 2 cut(s) 597, 751
DraIII CACNNNGTG 1 cut(s) 1213
DriI GACNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 106, 483
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 2 cut(s) 106, 483
Eco31I GGTCTC 2 cut(s) 98, 689
Eco47I GGWCC 2 cut(s) 834, 1184
Eco47III AGCGCT 1 cut(s) 297
Eco88I CYCGRG 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 834
EcoRII CCWGG 4 cut(s) 679, 1065, 1151, 1180
EgeI GGCGCC 1 cut(s) 1192
EheI GGCGCC 1 cut(s) 1192
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 4 cut(s) 485, 774, 847, 938
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 3 cut(s) 17, 833, 971
FatI CATG 4 cut(s) 481, 770, 843, 934
FbaI TGATCA 1 cut(s) 423
Fnu4HI GCNGC 3 cut(s) 974, 1029, 1123
FokI GGATG 4 cut(s) 291, 719, 787, 963
Fsp4HI GCNGC 3 cut(s) 974, 1029, 1123
FspBI CTAG 4 cut(s) 29, 71, 144, 165
FspI TGCGCA 1 cut(s) 490
GlaI GCGC 4 cut(s) 297, 490, 541, 1192
GluI GCNGC 3 cut(s) 974, 1029, 1123
GsuI CTGGAG 1 cut(s) 1135
HaeII RGCGCY 3 cut(s) 299, 543, 1194
HaeIII GGCC 1 cut(s) 457
HapII CCGG 6 cut(s) 252, 347, 872, 908, 1119, 1187
HhaI GCGC 4 cut(s) 298, 491, 542, 1193
Hin1I GRCGYC 1 cut(s) 1191
Hin1II CATG 4 cut(s) 485, 774, 847, 938
Hin6I GCGC 4 cut(s) 296, 489, 540, 1191
HinP1I GCGC 4 cut(s) 296, 489, 540, 1191
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 4 cut(s) 226, 313, 341, 391
HpaII CCGG 6 cut(s) 252, 347, 872, 908, 1119, 1187
HphI GGTGA 2 cut(s) 861, 1085
Hpy166II GTNNAC 4 cut(s) 203, 382, 759, 931
Hpy188I TCNGA 5 cut(s) 547, 609, 831, 1041, 1049
Hpy188III TCNNGA 7 cut(s) 105, 252, 375, 427, 502, 566, 1213
Hpy8I GTNNAC 4 cut(s) 203, 382, 759, 931
Hpy99I CGWCG 1 cut(s) 800
HpyAV CCTTC 3 cut(s) 77, 848, 869
HpyCH4III ACNGT 2 cut(s) 406, 892
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 6 cut(s) 11, 60, 746, 900, 943, 1019
HpyF10VI GCNNNNNNNGC 7 cut(s) 373, 636, 736, 923, 1025, 1034, 1232
HpyF3I CTNAG 4 cut(s) 180, 500, 536, 1236
HpySE526I ACGT 1 cut(s) 584
Hsp92I GRCGYC 1 cut(s) 1191
Hsp92II CATG 4 cut(s) 485, 774, 847, 938
HspAI GCGC 4 cut(s) 296, 489, 540, 1191
KasI GGCGCC 1 cut(s) 1190
Kpn2I TCCGGA 1 cut(s) 251
Ksp22I TGATCA 1 cut(s) 423
Kzo9I GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
LmnI GCTCC 2 cut(s) 364, 1154
Lsp1109I GCAGC 2 cut(s) 985, 1015
LweI GCATC 1 cut(s) 985
MabI ACCWGGT 1 cut(s) 1180
MaeI CTAG 4 cut(s) 29, 71, 144, 165
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 4 cut(s) 151, 442, 559, 718
MalI GATC 6 cut(s) 125, 256, 425, 573, 1076, 1175
MboI GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
MboII GAAGA 8 cut(s) 31, 93, 317, 470, 488, 818, 858, 1110
MhlI GDGCHC 1 cut(s) 624
MluCI AATT 7 cut(s) 118, 189, 246, 492, 610, 752, 1085
Mly113I GGCGCC 1 cut(s) 1191
MlyI GAGTC 2 cut(s) 350, 385
MroI TCCGGA 1 cut(s) 251
MroXI GAANNNNTTC 1 cut(s) 1089
MseI TTAA 4 cut(s) 399, 596, 750, 996
MspI CCGG 6 cut(s) 252, 347, 872, 908, 1119, 1187
MspR9I CCNGG 6 cut(s) 681, 1067, 1119, 1153, 1182, 1188
MvaI CCWGG 4 cut(s) 681, 1067, 1153, 1182
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 7 cut(s) 373, 636, 736, 923, 1025, 1034, 1232
NarI GGCGCC 1 cut(s) 1191
NciI CCSGG 2 cut(s) 1119, 1188
NdeII GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
NlaIII CATG 4 cut(s) 485, 774, 847, 938
NlaIV GGNNCC 3 cut(s) 836, 1163, 1192
NruI TCGCGA 1 cut(s) 376
NsbI TGCGCA 1 cut(s) 490
PdmI GAANNNNTTC 1 cut(s) 1089
PfeI GAWTC 2 cut(s) 226, 313
PflFI GACNNNGTC 1 cut(s) 1061
PfoI TCCNGGA 1 cut(s) 1065
PkrI GCNGC 3 cut(s) 975, 1030, 1124
PleI GAGTC 2 cut(s) 349, 385
PluTI GGCGCC 1 cut(s) 1194
PpsI GAGTC 2 cut(s) 349, 385
PpuMI RGGWCCY 1 cut(s) 834
PshAI GACNNNNGTC 1 cut(s) 681
PshBI ATTAAT 1 cut(s) 996
Psp5II RGGWCCY 1 cut(s) 834
Psp6I CCWGG 4 cut(s) 679, 1065, 1151, 1180
PspGI CCWGG 4 cut(s) 679, 1065, 1151, 1180
PspN4I GGNNCC 3 cut(s) 836, 1163, 1192
PspPI GGNCC 3 cut(s) 455, 834, 1184
PspPPI RGGWCCY 1 cut(s) 834
PstI CTGCAG 1 cut(s) 13
PsyI GACNNNGTC 1 cut(s) 1061
RruI TCGCGA 1 cut(s) 376
SaqAI TTAA 4 cut(s) 399, 596, 750, 996
SatI GCNGC 3 cut(s) 974, 1029, 1123
Sau3AI GATC 6 cut(s) 123, 254, 423, 571, 1074, 1173
Sau96I GGNCC 3 cut(s) 455, 834, 1184
SchI GAGTC 2 cut(s) 350, 385
ScrFI CCNGG 6 cut(s) 681, 1067, 1119, 1153, 1182, 1188
SduI GDGCHC 1 cut(s) 624
SexAI ACCWGGT 1 cut(s) 1180
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 1 cut(s) 9
SfoI GGCGCC 1 cut(s) 1192
SinI GGWCC 2 cut(s) 834, 1184
SmiI ATTTAAAT 1 cut(s) 751
SmlI CTYRAG 2 cut(s) 338, 564
SmoI CTYRAG 2 cut(s) 338, 564
Sse9I AATT 7 cut(s) 118, 189, 246, 492, 610, 752, 1085
SsiI CCGC 3 cut(s) 215, 1023, 1122
SspDI GGCGCC 1 cut(s) 1190
SspMI CTAG 4 cut(s) 29, 71, 144, 165
StyD4I CCNGG 6 cut(s) 679, 1065, 1117, 1151, 1180, 1186
SwaI ATTTAAAT 1 cut(s) 751
TaaI ACNGT 2 cut(s) 406, 892
TaiI ACGT 1 cut(s) 587
TaqI TCGA 3 cut(s) 122, 798, 1077
TasI AATT 7 cut(s) 118, 189, 246, 492, 610, 752, 1085
TauI GCSGC 1 cut(s) 1125
TfiI GAWTC 2 cut(s) 226, 313
Tru1I TTAA 4 cut(s) 399, 596, 750, 996
Tru9I TTAA 4 cut(s) 399, 596, 750, 996
TscAI CASTG 4 cut(s) 18, 748, 895, 1259
TseI GCWGC 2 cut(s) 973, 1028
TspDTI ATGAA 3 cut(s) 317, 470, 604
TspGWI ACGGA 1 cut(s) 297
TspRI CASTG 4 cut(s) 18, 748, 895, 1259
Tth111I GACNNNGTC 1 cut(s) 1061
VpaK11BI GGWCC 2 cut(s) 834, 1184
VspI ATTAAT 1 cut(s) 996
XapI RAATTY 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 1089
XspI CTAG 4 cut(s) 29, 71, 144, 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.