pycom03g17560

Xylosyltransferase 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0007023
Physical Location & Seq
Reverse (-)
18684067 .. 18686070
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17560.1

Sequence Viewer

Length: 1263 bp
ATGGGGTCTGCAATGGAGAAGAAATGGCTATTCCCTCTTGTCATAAGCTCTGTCATATGCATATTCCTTCTAGCCACTTCCTTGAACTTGGGTCTCGTCTCTTCACGACAAGCAATCAATTCGATCTTTTCCTTTTTACCATCTAGGGTAGTAACAAACCAATCTAGTCCAGCTTTTGCTGAGACTATAGTTTCACAAGGTCCACCCCCTCCTCCAGTGCCATCGATTCCCCGCTTTGCTTATCTAATTTCCGGGTCAAAGGGGGATTTGGAAAAGCTTTGGAGAACTCTCAAAGCGCTATACCATCCATTGAATCAATATGTTCTTCATTTAGACCTTGAGTCACCTTTAGCAGAAAGATTGGAGCTTGCTTCGCGAGTGGACAACGAGACTCTCTTTAATACAGTTGGGAATGTTTTCGTGATCGATACAGCTAATATGGTAACTTACAGAGGACCAACAATGGTTGCTAATACTCTTCATGCCTGCGCAATTCTTCTCAGGAGGAGTAAGGATTGGGATTGGTTTATCAATCTCAGCGCCTCAGATTATCCCCTTGTTACCCAAGATGATCTTATTAACACTTTTTCACCTTTAAACCGAAATCTGAATTTCATTGAGCACACAAGCCAACTTGGCTGGAAGGAGGATAAACGAGCAATGCCTTTGATTTTAGACCCTGGCCTCTACTCATCGAAAAAACAAGATGTATTTTGGGTTACACCACGGCGAACATTGCCCACTTCGTTTAAATTGTTTACTGGTTCGGCATGGATGGTCTTATCACGCTGGTTTGTTGAGTACTGTGTCTGGGGTTGGGACAATCTTCCGAGGACCCTTCTCATGTACTACACAAACTTTGTTTCTTCGCCGGAAGGCTATTTTCACACTGTTTTATGCAATGAACCGGAGTTTGCTAAAACTGCCGTCAACCATGATTTGCATTACATTTCTTGGGACATTCCTCCCAAGCAGCATCCCCATACCCTCAACATTAATGACACAAACAAGATGATTGCAAGTGGTGCTGCCTTTGCTCGAAAATTCGGGCACGATGACCCCGTCCTGGACAGGATCGACAAGGAATTACTTCACCGAAGAAAAGGGAGCTTCACTCCCGGCGGTTGGTGTGCTGGCAAACCGAAATGCTCCAGGGTTGGGAACCTGAACAAGATCAAACCAAGTCCAGGCGCCGACAGGCTTCGCCACCTCGTGGGTAGGCTTACCTTGACAGCCAAGTTTGGTCAAAACCAGTGTAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

421

Amino Acids

47.52

Weight (kDa)

9.28

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 79 - 338 1.3e-81 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 490
AccB1I GGYRCC 1 cut(s) 1190
AccB7I CCANNNNNTGG 1 cut(s) 1213
AccII CGCG 1 cut(s) 376
AciI CCGC 2 cut(s) 232, 1122
AclWI GGATC 1 cut(s) 1082
AcsI RAATTY 2 cut(s) 610, 1043
AcyI GRCGYC 1 cut(s) 1191
AdeI CACNNNGTG 1 cut(s) 1213
AfaI GTAC 2 cut(s) 803, 848
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 5 cut(s) 1066, 1125, 1158, 1187, 1213
AgsI TTSAA 2 cut(s) 85, 313
AhdI GACNNNNNGTC 1 cut(s) 340
AjnI CCWGG 4 cut(s) 679, 1065, 1151, 1186
AluBI AGCT 6 cut(s) 48, 173, 277, 367, 434, 1110
AluI AGCT 6 cut(s) 48, 173, 277, 367, 434, 1110
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 4 cut(s) 98, 103, 176, 383
AlwI GGATC 1 cut(s) 1082
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 1 cut(s) 682
ApeKI GCWGC 2 cut(s) 973, 1028
ApoI RAATTY 2 cut(s) 610, 1043
AseI ATTAAT 1 cut(s) 996
Asp700I GAANNNNTTC 2 cut(s) 416, 1089
AspLEI GCGC 4 cut(s) 298, 491, 542, 1193
AspS9I GGNCC 3 cut(s) 200, 455, 834
AsuC2I CCSGG 2 cut(s) 253, 1119
AsuHPI GGTGA 3 cut(s) 336, 582, 1085
AvaII GGWCC 3 cut(s) 200, 455, 834
BaeGI GKGCMC 1 cut(s) 1053
BanI GGYRCC 1 cut(s) 1190
BauI CACGAG 1 cut(s) 1211
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 2 cut(s) 985, 1015
BccI CCATC 4 cut(s) 148, 229, 312, 769
BceAI ACGGC 2 cut(s) 743, 911
BcgI CGANNNNNNTGC 2 cut(s) 102, 136
BciT130I CCWGG 4 cut(s) 681, 1067, 1153, 1188
BcnI CCSGG 2 cut(s) 253, 1119
BcoDI GTCTC 4 cut(s) 98, 103, 176, 383
BfaI CTAG 3 cut(s) 71, 144, 165
BfmI CTRYAG 1 cut(s) 186
BfoI RGCGCY 3 cut(s) 299, 543, 1194
BglI GCCNNNNNGGC 1 cut(s) 636
BisI GCNGC 2 cut(s) 974, 1029
BlsI GCNGC 2 cut(s) 975, 1030
BmcAI AGTACT 1 cut(s) 803
Bme1390I CCNGG 6 cut(s) 253, 681, 1067, 1119, 1153, 1188
Bme18I GGWCC 3 cut(s) 200, 455, 834
BmeRI GACNNNNNGTC 1 cut(s) 340
BmgT120I GGNCC 3 cut(s) 200, 455, 834
BmiI GGNNCC 3 cut(s) 836, 1163, 1192
BmrFI CCNGG 6 cut(s) 253, 681, 1067, 1119, 1153, 1188
BmsI GCATC 1 cut(s) 985
BplI GAGNNNNNCTC 2 cut(s) 1099, 1131
BpmI CTGGAG 2 cut(s) 198, 1135
BpuEI CTTGAG 1 cut(s) 359
BpuMI CCSGG 2 cut(s) 253, 1119
Bsa29I ATCGAT 2 cut(s) 224, 426
BsaHI GRCGYC 1 cut(s) 1191
BsaI GGTCTC 1 cut(s) 98
BsaJI CCNNGG 4 cut(s) 679, 725, 830, 1152
BsaWI WCCGGW 1 cut(s) 907
Bsc4I CCNNNNNNNGG 5 cut(s) 1066, 1125, 1158, 1187, 1213
Bse1I ACTGG 3 cut(s) 215, 766, 1252
Bse3DI GCAATG 4 cut(s) 18, 666, 734, 907
BseBI CCWGG 4 cut(s) 681, 1067, 1153, 1188
BseCI ATCGAT 2 cut(s) 224, 426
BseDI CCNNGG 4 cut(s) 679, 725, 830, 1152
BseGI GGATG 3 cut(s) 304, 780, 976
BseLI CCNNNNNNNGG 5 cut(s) 1066, 1125, 1158, 1187, 1213
BseMI GCAATG 4 cut(s) 18, 666, 734, 907
BseMII CTCAG 4 cut(s) 171, 514, 550, 558
BseNI ACTGG 3 cut(s) 215, 766, 1252
BseRI GAGGAG 2 cut(s) 201, 520
BseSI GKGCMC 1 cut(s) 1053
BseXI GCAGC 2 cut(s) 985, 1015
Bsh1236I CGCG 1 cut(s) 376
BshFI GGCC 1 cut(s) 684
BshNI GGYRCC 1 cut(s) 1190
BshVI ATCGAT 2 cut(s) 224, 426
BsiHKAI GWGCWC 1 cut(s) 624
BsiSI CCGG 4 cut(s) 252, 872, 908, 1119
BslFI GGGAC 2 cut(s) 833, 971
BslI CCNNNNNNNGG 5 cut(s) 1066, 1125, 1158, 1187, 1213
BsmAI GTCTC 4 cut(s) 98, 103, 176, 383
BsmBI CGTCTC 1 cut(s) 103
BsmFI GGGAC 2 cut(s) 833, 971
BsnI GGCC 1 cut(s) 684
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 624, 1053
Bsp143I GATC 5 cut(s) 123, 423, 571, 1074, 1173
Bsp68I TCGCGA 1 cut(s) 376
BspACI CCGC 2 cut(s) 232, 1122
BspANI GGCC 1 cut(s) 684
BspCNI CTCAG 4 cut(s) 172, 513, 549, 557
BspDI ATCGAT 2 cut(s) 224, 426
BspFNI CGCG 1 cut(s) 376
BspLI GGNNCC 3 cut(s) 836, 1163, 1192
BspPI GGATC 1 cut(s) 1082
BspT107I GGYRCC 1 cut(s) 1190
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 4 cut(s) 18, 666, 734, 907
BsrI ACTGG 3 cut(s) 215, 766, 1252
BssECI CCNNGG 4 cut(s) 679, 725, 830, 1152
BssMI GATC 5 cut(s) 123, 423, 571, 1074, 1173
BssNI GRCGYC 1 cut(s) 1191
BssSI CACGAG 1 cut(s) 1211
Bst2BI CACGAG 1 cut(s) 1211
Bst2UI CCWGG 4 cut(s) 681, 1067, 1153, 1188
Bst4CI ACNGT 3 cut(s) 406, 806, 892
Bst6I CTCTTC 2 cut(s) 106, 483
BstACI GRCGYC 1 cut(s) 1191
BstAPI GCANNNNNTGC 1 cut(s) 1025
BstC8I GCNNGC 3 cut(s) 369, 487, 1135
BstDEI CTNAG 4 cut(s) 180, 500, 536, 544
BstDSI CCRYGG 1 cut(s) 725
BstF5I GGATG 3 cut(s) 304, 780, 976
BstFNI CGCG 1 cut(s) 376
BstH2I RGCGCY 3 cut(s) 299, 543, 1194
BstHHI GCGC 4 cut(s) 298, 491, 542, 1193
BstKTI GATC 5 cut(s) 126, 426, 574, 1077, 1176
BstMAI GTCTC 4 cut(s) 98, 103, 176, 383
BstMBI GATC 5 cut(s) 123, 423, 571, 1074, 1173
BstMWI GCNNNNNNNGC 6 cut(s) 373, 636, 736, 923, 1025, 1034
BstNI CCWGG 4 cut(s) 681, 1067, 1153, 1188
BstSCI CCNGG 6 cut(s) 251, 679, 1065, 1117, 1151, 1186
BstSFI CTRYAG 1 cut(s) 186
BstSLI GKGCMC 1 cut(s) 1053
BstUI CGCG 1 cut(s) 376
BstV1I GCAGC 2 cut(s) 985, 1015
Bsu15I ATCGAT 2 cut(s) 224, 426
BsuRI GGCC 1 cut(s) 684
BsuTUI ATCGAT 2 cut(s) 224, 426
BtgI CCRYGG 1 cut(s) 725
BtsCI GGATG 3 cut(s) 304, 780, 976
BtsIMutI CAGTG 3 cut(s) 222, 888, 1259
BtuMI TCGCGA 1 cut(s) 376
Cac8I GCNNGC 3 cut(s) 369, 487, 1135
CfoI GCGC 4 cut(s) 298, 491, 542, 1193
Cfr13I GGNCC 3 cut(s) 200, 455, 834
ClaI ATCGAT 2 cut(s) 224, 426
Csp6I GTAC 2 cut(s) 802, 847
CviAII CATG 4 cut(s) 482, 771, 844, 935
CviQI GTAC 2 cut(s) 802, 847
DdeI CTNAG 4 cut(s) 180, 500, 536, 544
DinI GGCGCC 1 cut(s) 1192
DpnI GATC 5 cut(s) 125, 425, 573, 1076, 1175
DpnII GATC 5 cut(s) 123, 423, 571, 1074, 1173
DraI TTTAAA 2 cut(s) 597, 751
DraIII CACNNNGTG 1 cut(s) 1213
DriI GACNNNNNGTC 1 cut(s) 340
Eam1104I CTCTTC 2 cut(s) 106, 483
Eam1105I GACNNNNNGTC 1 cut(s) 340
EarI CTCTTC 2 cut(s) 106, 483
Eco31I GGTCTC 1 cut(s) 98
Eco47I GGWCC 3 cut(s) 200, 455, 834
Eco47III AGCGCT 1 cut(s) 297
EcoO109I RGGNCCY 1 cut(s) 834
EcoRII CCWGG 4 cut(s) 679, 1065, 1151, 1186
EcoT22I ATGCAT 1 cut(s) 62
EgeI GGCGCC 1 cut(s) 1192
EheI GGCGCC 1 cut(s) 1192
Esp3I CGTCTC 1 cut(s) 103
FaeI CATG 4 cut(s) 485, 774, 847, 938
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 2 cut(s) 833, 971
FatI CATG 4 cut(s) 481, 770, 843, 934
FauI CCCGC 1 cut(s) 239
FauNDI CATATG 1 cut(s) 56
Fnu4HI GCNGC 2 cut(s) 974, 1029
FokI GGATG 3 cut(s) 291, 787, 963
Fsp4HI GCNGC 2 cut(s) 974, 1029
FspBI CTAG 3 cut(s) 71, 144, 165
FspI TGCGCA 1 cut(s) 490
GlaI GCGC 4 cut(s) 297, 490, 541, 1192
GluI GCNGC 2 cut(s) 974, 1029
GsuI CTGGAG 2 cut(s) 198, 1135
HaeII RGCGCY 3 cut(s) 299, 543, 1194
HaeIII GGCC 1 cut(s) 684
HapII CCGG 4 cut(s) 252, 872, 908, 1119
HhaI GCGC 4 cut(s) 298, 491, 542, 1193
Hin1I GRCGYC 1 cut(s) 1191
Hin1II CATG 4 cut(s) 485, 774, 847, 938
Hin6I GCGC 4 cut(s) 296, 489, 540, 1191
HinP1I GCGC 4 cut(s) 296, 489, 540, 1191
HincII GTYRAC 1 cut(s) 931
HindII GTYRAC 1 cut(s) 931
HindIII AAGCTT 1 cut(s) 275
HinfI GANTC 4 cut(s) 226, 313, 341, 391
HpaII CCGG 4 cut(s) 252, 872, 908, 1119
HphI GGTGA 3 cut(s) 336, 582, 1085
Hpy166II GTNNAC 4 cut(s) 203, 382, 759, 931
Hpy188I TCNGA 3 cut(s) 547, 609, 831
Hpy188III TCNNGA 4 cut(s) 105, 375, 421, 502
Hpy8I GTNNAC 4 cut(s) 203, 382, 759, 931
HpyAV CCTTC 4 cut(s) 77, 637, 848, 869
HpyCH4III ACNGT 3 cut(s) 406, 806, 892
HpyCH4V TGCA 5 cut(s) 11, 60, 900, 943, 1019
HpyF10VI GCNNNNNNNGC 6 cut(s) 373, 636, 736, 923, 1025, 1034
HpyF3I CTNAG 4 cut(s) 180, 500, 536, 544
Hsp92I GRCGYC 1 cut(s) 1191
Hsp92II CATG 4 cut(s) 485, 774, 847, 938
HspAI GCGC 4 cut(s) 296, 489, 540, 1191
KasI GGCGCC 1 cut(s) 1190
Kzo9I GATC 5 cut(s) 123, 423, 571, 1074, 1173
LmnI GCTCC 3 cut(s) 364, 1107, 1154
Lsp1109I GCAGC 2 cut(s) 985, 1015
LweI GCATC 1 cut(s) 985
MaeI CTAG 3 cut(s) 71, 144, 165
MaeIII GTNAC 5 cut(s) 151, 342, 442, 559, 718
MalI GATC 5 cut(s) 125, 425, 573, 1076, 1175
MboI GATC 5 cut(s) 123, 423, 571, 1074, 1173
MboII GAAGA 8 cut(s) 31, 93, 317, 470, 488, 818, 858, 1110
MhlI GDGCHC 2 cut(s) 624, 1053
MluCI AATT 7 cut(s) 118, 246, 492, 610, 752, 1043, 1085
Mly113I GGCGCC 1 cut(s) 1191
MlyI GAGTC 2 cut(s) 350, 385
Mph1103I ATGCAT 1 cut(s) 62
MroXI GAANNNNTTC 2 cut(s) 416, 1089
MseI TTAA 5 cut(s) 399, 579, 596, 750, 996
MspI CCGG 4 cut(s) 252, 872, 908, 1119
MspR9I CCNGG 6 cut(s) 253, 681, 1067, 1119, 1153, 1188
MvaI CCWGG 4 cut(s) 681, 1067, 1153, 1188
MvnI CGCG 1 cut(s) 376
MwoI GCNNNNNNNGC 6 cut(s) 373, 636, 736, 923, 1025, 1034
NarI GGCGCC 1 cut(s) 1191
NciI CCSGG 2 cut(s) 253, 1119
NdeI CATATG 1 cut(s) 56
NdeII GATC 5 cut(s) 123, 423, 571, 1074, 1173
NlaIII CATG 4 cut(s) 485, 774, 847, 938
NlaIV GGNNCC 3 cut(s) 836, 1163, 1192
NmuCI GTSAC 1 cut(s) 342
NruI TCGCGA 1 cut(s) 376
NsbI TGCGCA 1 cut(s) 490
NsiI ATGCAT 1 cut(s) 62
PcsI WCGNNNNNNNCGW 1 cut(s) 1059
PdmI GAANNNNTTC 2 cut(s) 416, 1089
PfeI GAWTC 2 cut(s) 226, 313
PflFI GACNNNGTC 1 cut(s) 1061
PflMI CCANNNNNTGG 1 cut(s) 1213
PfoI TCCNGGA 1 cut(s) 1065
PkrI GCNGC 2 cut(s) 975, 1030
PleI GAGTC 2 cut(s) 349, 385
PluTI GGCGCC 1 cut(s) 1194
PpsI GAGTC 2 cut(s) 349, 385
PpuMI RGGWCCY 1 cut(s) 834
PshBI ATTAAT 1 cut(s) 996
Psp5II RGGWCCY 1 cut(s) 834
Psp6I CCWGG 4 cut(s) 679, 1065, 1151, 1186
PspGI CCWGG 4 cut(s) 679, 1065, 1151, 1186
PspN4I GGNNCC 3 cut(s) 836, 1163, 1192
PspPI GGNCC 3 cut(s) 200, 455, 834
PspPPI RGGWCCY 1 cut(s) 834
PsyI GACNNNGTC 1 cut(s) 1061
RruI TCGCGA 1 cut(s) 376
RsaI GTAC 2 cut(s) 803, 848
RsaNI GTAC 2 cut(s) 802, 847
SaqAI TTAA 5 cut(s) 399, 579, 596, 750, 996
SatI GCNGC 2 cut(s) 974, 1029
Sau3AI GATC 5 cut(s) 123, 423, 571, 1074, 1173
Sau96I GGNCC 3 cut(s) 200, 455, 834
ScaI AGTACT 1 cut(s) 803
SchI GAGTC 2 cut(s) 350, 385
ScrFI CCNGG 6 cut(s) 253, 681, 1067, 1119, 1153, 1188
SduI GDGCHC 2 cut(s) 624, 1053
SfaNI GCATC 1 cut(s) 985
SfcI CTRYAG 1 cut(s) 186
SfoI GGCGCC 1 cut(s) 1192
SinI GGWCC 3 cut(s) 200, 455, 834
SmlI CTYRAG 1 cut(s) 338
SmoI CTYRAG 1 cut(s) 338
Sse9I AATT 7 cut(s) 118, 246, 492, 610, 752, 1043, 1085
SsiI CCGC 2 cut(s) 232, 1122
SspDI GGCGCC 1 cut(s) 1190
SspMI CTAG 3 cut(s) 71, 144, 165
StyD4I CCNGG 6 cut(s) 251, 679, 1065, 1117, 1151, 1186
TaaI ACNGT 3 cut(s) 406, 806, 892
TaqI TCGA 6 cut(s) 122, 224, 426, 695, 1039, 1077
TasI AATT 7 cut(s) 118, 246, 492, 610, 752, 1043, 1085
TatI WGTACW 2 cut(s) 801, 846
TfiI GAWTC 2 cut(s) 226, 313
Tru1I TTAA 5 cut(s) 399, 579, 596, 750, 996
Tru9I TTAA 5 cut(s) 399, 579, 596, 750, 996
TscAI CASTG 3 cut(s) 222, 895, 1259
TseFI GTSAC 1 cut(s) 342
TseI GCWGC 2 cut(s) 973, 1028
Tsp45I GTSAC 1 cut(s) 342
TspDTI ATGAA 4 cut(s) 317, 470, 604, 918
TspRI CASTG 3 cut(s) 222, 895, 1259
Tth111I GACNNNGTC 1 cut(s) 1061
Van91I CCANNNNNTGG 1 cut(s) 1213
VpaK11BI GGWCC 3 cut(s) 200, 455, 834
VspI ATTAAT 1 cut(s) 996
XapI RAATTY 2 cut(s) 610, 1043
XmnI GAANNNNTTC 2 cut(s) 416, 1089
XspI CTAG 3 cut(s) 71, 144, 165
ZrmI AGTACT 1 cut(s) 803
Zsp2I ATGCAT 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.