FvH4_3g20100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012497
Physical Location & Seq
Reverse (-)
13222272 .. 13226285
4014 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20100.t1

Sequence Viewer

Length: 987 bp
ATGGGCAAAGATCGAAACGGCGCCGTTCCGGAGAAAGCAAGCAAAACCCCAGACAAAGACGACGGAAGCGAAAGAAAATCCGGCAAATCCATAGAGCTTTCTGACTCCGATAAAGACACGAGGCGCAGCAAATCGAGACGAAAAGCGCGGGAAATCTCCGAATCGAGCGATGAGGAGCACGCGCGGCGGAGGAGGAAGAGGAAGTCGCGGCGGAGGTACAGTAGCAGCGAGGACGACTCGGATTCGGAGTCTTCGGAAGAGTCCGAGGAGGAGAGCGGGTCGGATTCGGTGAGCGAGGGCGGGAGTGATAGCGAGAGCGAGCGGCGGAGGAGGAAGGAGAGGAGGAGGAGGAAGGAGAAAGAGGAGAGGAGAAGGAGAGAGAAGGAGAAGAAGAGGAGGAGGAGAGAGAGAGAAGAGGAGAAGAAGAAGAAGGAGAGGAGGAAGAAGAGGAAGAAGAAGGAGAAGAAGGAGAAAGGTAAGAAAGGAGCGGTTACTGATTCTTGGGGCAAGTATGGGATTATCAGAGAGACTGATATGTGGAACAAGCGACCGGAGTTTACGGCATGGTTGGCTGAAGTAAAACAGGTGAACCTGGAGCATCTGCCGAATTGGGAAGAGAAGCAGATGTTCAAACAGTTCATGGAAGATCACAACACAGCTACATTTCCTTCCAAAAAGTATTATAGCCTTGATGCTTACTATAGCCATAAAATGGAAAAGGAAATGAAAAAGGGTATGAAAAAGGTTGTGGAAAAAGAGCGTACTGTATTCAATGATGAGGAAGTGCGAAGGCAAGAAATGATGAGAGTCCGTGAAAGACAAAAGGAAGAAGAAGTAGAAGCTCTGAAGCGCTCTATGCAGAGTGGACTGGCGCAAGCAATGAAAGAGCAAGCTCAACTTCGGGAAGAGATGGCTTACCAGTACAAGATCGGAAACTTTGAGGCTGCTGCTGCTATCCAGAGAAGGTTGGACCCTGACGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

39.38

Weight (kDa)

9.76

Isoelectric Point (pI)

92.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccB7I CCANNNNNTGG 1 cut(s) 712
AccBSI CCGCTC 3 cut(s) 276, 322, 488
AccII CGCG 4 cut(s) 148, 182, 184, 208
AccIII TCCGGA 1 cut(s) 28
AcuI CTGAAG 2 cut(s) 594, 866
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 3 cut(s) 218, 763, 923
AfeI AGCGCT 1 cut(s) 851
AfiI CCNNNNNNNGG 1 cut(s) 712
AgsI TTSAA 2 cut(s) 631, 772
AjnI CCWGG 1 cut(s) 591
AluBI AGCT 4 cut(s) 97, 659, 842, 893
AluI AGCT 4 cut(s) 97, 659, 842, 893
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 130, 521
Aor13HI TCCGGA 1 cut(s) 28
Aor51HI AGCGCT 1 cut(s) 851
ApeKI GCWGC 5 cut(s) 126, 225, 944, 947, 950
AspLEI GCGC 6 cut(s) 23, 126, 148, 184, 852, 874
AspS9I GGNCC 1 cut(s) 970
AsuHPI GGTGA 2 cut(s) 301, 598
AvaII GGWCC 1 cut(s) 970
BanI GGYRCC 1 cut(s) 20
BauI CACGAG 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 5 cut(s) 138, 237, 931, 934, 937
BccI CCATC 1 cut(s) 904
BceAI ACGGC 3 cut(s) 8, 34, 576
BciT130I CCWGG 1 cut(s) 593
BcoDI GTCTC 2 cut(s) 130, 521
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 2 cut(s) 24, 853
BisI GCNGC 8 cut(s) 127, 185, 209, 226, 323, 945, 948, 951
BlsI GCNGC 8 cut(s) 128, 186, 210, 227, 324, 946, 949, 952
Bme1390I CCNGG 1 cut(s) 593
Bme18I GGWCC 1 cut(s) 970
BmgT120I GGNCC 1 cut(s) 970
BmiI GGNNCC 2 cut(s) 22, 972
BmrFI CCNGG 1 cut(s) 593
BmsI GCATC 2 cut(s) 607, 682
BpiI GAAGAC 1 cut(s) 243
BplI GAGNNNNNCTC 2 cut(s) 221, 253
BpmI CTGGAG 1 cut(s) 614
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 264
BsaWI WCCGGW 2 cut(s) 28, 550
BsaXI ACNNNNNCTCC 4 cut(s) 205, 235, 263, 293
Bsc4I CCNNNNNNNGG 1 cut(s) 712
Bse1I ACTGG 2 cut(s) 873, 919
Bse3DI GCAATG 1 cut(s) 885
BseAI TCCGGA 1 cut(s) 28
BseBI CCWGG 1 cut(s) 593
BseDI CCNNGG 1 cut(s) 264
BseLI CCNNNNNNNGG 1 cut(s) 712
BseMI GCAATG 1 cut(s) 885
BseNI ACTGG 2 cut(s) 873, 919
BseXI GCAGC 5 cut(s) 138, 237, 931, 934, 937
Bsh1236I CGCG 4 cut(s) 148, 182, 184, 208
Bsh1285I CGRYCG 1 cut(s) 551
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 3 cut(s) 29, 81, 551
BslI CCNNNNNNNGG 1 cut(s) 712
BsmAI GTCTC 2 cut(s) 130, 521
BsmBI CGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 1 cut(s) 180
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 3 cut(s) 10, 646, 927
BspEI TCCGGA 1 cut(s) 28
BspFNI CGCG 4 cut(s) 148, 182, 184, 208
BspLI GGNNCC 2 cut(s) 22, 972
BspT107I GGYRCC 1 cut(s) 20
BsrBI CCGCTC 3 cut(s) 276, 322, 488
BsrDI GCAATG 1 cut(s) 885
BsrI ACTGG 2 cut(s) 873, 919
BssECI CCNNGG 1 cut(s) 264
BssMI GATC 3 cut(s) 10, 646, 927
BssNI GRCGYC 1 cut(s) 21
BssSI CACGAG 1 cut(s) 118
Bst2BI CACGAG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 593
Bst4CI ACNGT 3 cut(s) 221, 636, 766
Bst6I CTCTTC 7 cut(s) 191, 252, 386, 408, 440, 609, 900
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 5 cut(s) 40, 180, 320, 876, 891
BstFNI CGCG 4 cut(s) 148, 182, 184, 208
BstH2I RGCGCY 2 cut(s) 24, 853
BstHHI GCGC 6 cut(s) 23, 126, 148, 184, 852, 874
BstKTI GATC 3 cut(s) 13, 649, 930
BstMAI GTCTC 2 cut(s) 130, 521
BstMBI GATC 3 cut(s) 10, 646, 927
BstMCI CGRYCG 1 cut(s) 551
BstMWI GCNNNNNNNGC 4 cut(s) 184, 569, 856, 950
BstNI CCWGG 1 cut(s) 593
BstSCI CCNGG 1 cut(s) 591
BstSFI CTRYAG 1 cut(s) 700
BstUI CGCG 4 cut(s) 148, 182, 184, 208
BstV1I GCAGC 5 cut(s) 138, 237, 931, 934, 937
BstV2I GAAGAC 1 cut(s) 243
BtgZI GCGATG 1 cut(s) 183
Cac8I GCNNGC 5 cut(s) 40, 180, 320, 876, 891
CfoI GCGC 6 cut(s) 23, 126, 148, 184, 852, 874
Cfr13I GGNCC 1 cut(s) 970
Csp6I GTAC 3 cut(s) 217, 762, 922
CviAII CATG 2 cut(s) 564, 640
CviJI RGCY 9 cut(s) 97, 572, 659, 687, 705, 842, 893, 914, 944
CviKI_1 RGCY 9 cut(s) 97, 572, 659, 687, 705, 842, 893, 914, 944
CviQI GTAC 3 cut(s) 217, 762, 922
DinI GGCGCC 1 cut(s) 22
DpnI GATC 3 cut(s) 12, 648, 929
DpnII GATC 3 cut(s) 10, 646, 927
Eam1104I CTCTTC 7 cut(s) 191, 252, 386, 408, 440, 609, 900
EarI CTCTTC 7 cut(s) 191, 252, 386, 408, 440, 609, 900
EciI GGCGGA 3 cut(s) 202, 226, 340
Eco47I GGWCC 1 cut(s) 970
Eco47III AGCGCT 1 cut(s) 851
Eco57I CTGAAG 2 cut(s) 594, 866
EcoRII CCWGG 1 cut(s) 591
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 2 cut(s) 567, 643
FalI AAGNNNNNCTT 2 cut(s) 882, 914
FatI CATG 2 cut(s) 563, 639
FauI CCCGC 3 cut(s) 141, 269, 293
Fnu4HI GCNGC 8 cut(s) 127, 185, 209, 226, 323, 945, 948, 951
Fsp4HI GCNGC 8 cut(s) 127, 185, 209, 226, 323, 945, 948, 951
GlaI GCGC 6 cut(s) 22, 125, 147, 183, 851, 873
GluI GCNGC 8 cut(s) 127, 185, 209, 226, 323, 945, 948, 951
GsuI CTGGAG 1 cut(s) 614
HaeII RGCGCY 2 cut(s) 24, 853
HapII CCGG 3 cut(s) 29, 81, 551
HhaI GCGC 6 cut(s) 23, 126, 148, 184, 852, 874
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 567, 643
Hin6I GCGC 6 cut(s) 21, 124, 146, 182, 850, 872
HinP1I GCGC 6 cut(s) 21, 124, 146, 182, 850, 872
HinfI GANTC 9 cut(s) 104, 161, 236, 242, 248, 260, 284, 497, 807
HpaII CCGG 3 cut(s) 29, 81, 551
HphI GGTGA 2 cut(s) 301, 598
Hpy166II GTNNAC 3 cut(s) 558, 589, 866
Hpy188III TCNNGA 4 cut(s) 29, 135, 902, 958
Hpy8I GTNNAC 3 cut(s) 558, 589, 866
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 3 cut(s) 221, 636, 766
HpyCH4V TGCA 1 cut(s) 859
HpyF10VI GCNNNNNNNGC 4 cut(s) 184, 569, 856, 950
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 567, 643
HspAI GCGC 6 cut(s) 21, 124, 146, 182, 850, 872
KasI GGCGCC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 3 cut(s) 10, 646, 927
LmnI GCTCC 3 cut(s) 175, 485, 595
Lsp1109I GCAGC 5 cut(s) 138, 237, 931, 934, 937
LweI GCATC 2 cut(s) 607, 682
MaeIII GTNAC 1 cut(s) 490
MalI GATC 3 cut(s) 12, 648, 929
MbiI CCGCTC 3 cut(s) 276, 322, 488
MboI GATC 3 cut(s) 10, 646, 927
MhlI GDGCHC 1 cut(s) 180
MluCI AATT 1 cut(s) 607
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 5 cut(s) 98, 230, 257, 269, 816
MmeI TCCRAC 2 cut(s) 261, 948
MroI TCCGGA 1 cut(s) 28
MspI CCGG 3 cut(s) 29, 81, 551
MspR9I CCNGG 1 cut(s) 593
MvaI CCWGG 1 cut(s) 593
MvnI CGCG 4 cut(s) 148, 182, 184, 208
MwoI GCNNNNNNNGC 4 cut(s) 184, 569, 856, 950
NarI GGCGCC 1 cut(s) 21
NdeII GATC 3 cut(s) 10, 646, 927
NlaIII CATG 2 cut(s) 567, 643
NlaIV GGNNCC 2 cut(s) 22, 972
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 4 cut(s) 161, 242, 284, 497
PflMI CCANNNNNTGG 1 cut(s) 712
PkrI GCNGC 8 cut(s) 128, 186, 210, 227, 324, 946, 949, 952
PleI GAGTC 5 cut(s) 98, 230, 256, 268, 815
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 5 cut(s) 98, 230, 256, 268, 815
Psp6I CCWGG 1 cut(s) 591
PspGI CCWGG 1 cut(s) 591
PspN4I GGNNCC 2 cut(s) 22, 972
PspPI GGNCC 1 cut(s) 970
RsaI GTAC 3 cut(s) 218, 763, 923
RsaNI GTAC 3 cut(s) 217, 762, 922
SatI GCNGC 8 cut(s) 127, 185, 209, 226, 323, 945, 948, 951
Sau3AI GATC 3 cut(s) 10, 646, 927
Sau96I GGNCC 1 cut(s) 970
SchI GAGTC 5 cut(s) 98, 230, 257, 269, 816
ScrFI CCNGG 1 cut(s) 593
SduI GDGCHC 1 cut(s) 180
SfaNI GCATC 2 cut(s) 607, 682
SfcI CTRYAG 1 cut(s) 700
SfoI GGCGCC 1 cut(s) 22
SinI GGWCC 1 cut(s) 970
Sse9I AATT 1 cut(s) 607
SspDI GGCGCC 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 591
TaaI ACNGT 3 cut(s) 221, 636, 766
TaqI TCGA 3 cut(s) 13, 134, 164
TasI AATT 1 cut(s) 607
TatI WGTACW 1 cut(s) 921
TauI GCSGC 3 cut(s) 187, 211, 325
TfiI GAWTC 4 cut(s) 161, 242, 284, 497
TseI GCWGC 5 cut(s) 126, 225, 944, 947, 950
TspDTI ATGAA 4 cut(s) 628, 740, 752, 896
TspGWI ACGGA 2 cut(s) 78, 800
Van91I CCANNNNNTGG 1 cut(s) 712
VpaK11BI GGWCC 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.