pycom03g17360

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012497
Physical Location & Seq
Reverse (-)
18539095 .. 18541630
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g17360.3

Sequence Viewer

Length: 480 bp
ATGGGATCGATCAGAGAAACTGATATGTGGAACAAACGACCAGAGTTCACAGCATGGTTACAGGAAGTAAAACAGGTGAACCTGGAACATCTGGCAAATTGGGAAGAGAAGCAGATGTTCAAACAGTTCATGGAAGATCACAATACAGCTACCTTCCCTTCGAAAAAGTACTACAGCCTAGATAATTACTACAGGCATAAAATGGAGAAGGAAATTAAAAGAGGTTTTAAGAAGGCTACGCCAACTGAACGTATTGTATTCAATGACGAAGAACAAAAACGGCAAGAAATGATGCGAGTGCGTGAAAAGCAAAAGGAAGAAGAAGTAGAGGCTCTGAAGCGCTCAATGCAGAGTGGACTGGCACAAGCAATGAAAGAGCAAGCTCAACTAAGGGAAGAGATGGCTTACCAGTACAAGATTGGAAACATGGAGGCTGCCGCTGCTATTCAGAGAAGGTTGGACCCTGATGCTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

19.13

Weight (kDa)

7.86

Isoelectric Point (pI)

62.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 438
AclWI GGATC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 356
AfaI GTAC 2 cut(s) 170, 413
AfeI AGCGCT 1 cut(s) 341
AgsI TTSAA 2 cut(s) 121, 262
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 2 cut(s) 149, 383
AluI AGCT 2 cut(s) 149, 383
AlwI GGATC 1 cut(s) 13
Aor51HI AGCGCT 1 cut(s) 341
ApeKI GCWGC 3 cut(s) 434, 440, 470
AspLEI GCGC 1 cut(s) 342
AspS9I GGNCC 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 88
AsuII TTCGAA 1 cut(s) 161
AvaII GGWCC 1 cut(s) 460
BbvI GCAGC 3 cut(s) 421, 427, 457
BccI CCATC 1 cut(s) 394
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 83
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 2 cut(s) 172, 190
BfoI RGCGCY 1 cut(s) 343
BisI GCNGC 4 cut(s) 435, 438, 441, 471
BlsI GCNGC 4 cut(s) 436, 439, 442, 472
BmcAI AGTACT 1 cut(s) 170
Bme1390I CCNGG 1 cut(s) 83
Bme18I GGWCC 1 cut(s) 460
BmgT120I GGNCC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 2 cut(s) 282, 457
Bpu14I TTCGAA 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 8
Bse1I ACTGG 2 cut(s) 363, 409
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 1 cut(s) 83
BseCI ATCGAT 1 cut(s) 8
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 2 cut(s) 363, 409
BseXI GCAGC 3 cut(s) 421, 427, 457
BshVI ATCGAT 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 161
Bsp143I GATC 3 cut(s) 5, 9, 136
BspACI CCGC 1 cut(s) 438
BspDI ATCGAT 1 cut(s) 8
BspLI GGNNCC 1 cut(s) 462
BspPI GGATC 1 cut(s) 13
BspT104I TTCGAA 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 375
BsrI ACTGG 2 cut(s) 363, 409
BssMI GATC 3 cut(s) 5, 9, 136
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 126
Bst6I CTCTTC 2 cut(s) 99, 390
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 381
BstDEI CTNAG 1 cut(s) 389
BstH2I RGCGCY 1 cut(s) 343
BstHHI GCGC 1 cut(s) 342
BstKTI GATC 3 cut(s) 8, 12, 139
BstMBI GATC 3 cut(s) 5, 9, 136
BstMWI GCNNNNNNNGC 3 cut(s) 307, 346, 440
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSFI CTRYAG 2 cut(s) 172, 190
BstV1I GCAGC 3 cut(s) 421, 427, 457
Bsu15I ATCGAT 1 cut(s) 8
BsuTUI ATCGAT 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 381
CfoI GCGC 1 cut(s) 342
Cfr13I GGNCC 1 cut(s) 460
ClaI ATCGAT 1 cut(s) 8
Csp6I GTAC 2 cut(s) 169, 412
CviAII CATG 3 cut(s) 54, 130, 427
CviJI RGCY 7 cut(s) 149, 177, 236, 332, 383, 404, 434
CviKI_1 RGCY 7 cut(s) 149, 177, 236, 332, 383, 404, 434
CviQI GTAC 2 cut(s) 169, 412
DdeI CTNAG 1 cut(s) 389
DpnI GATC 3 cut(s) 7, 11, 138
DpnII GATC 3 cut(s) 5, 9, 136
Eam1104I CTCTTC 2 cut(s) 99, 390
EarI CTCTTC 2 cut(s) 99, 390
Eco47I GGWCC 1 cut(s) 460
Eco47III AGCGCT 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 356
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 3 cut(s) 57, 133, 430
FaiI YATR 5 cut(s) 26, 55, 131, 198, 428
FatI CATG 3 cut(s) 53, 129, 426
Fnu4HI GCNGC 4 cut(s) 435, 438, 441, 471
Fsp4HI GCNGC 4 cut(s) 435, 438, 441, 471
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 341
GluI GCNGC 4 cut(s) 435, 438, 441, 471
HaeII RGCGCY 1 cut(s) 343
HhaI GCGC 1 cut(s) 342
Hin1II CATG 3 cut(s) 57, 133, 430
Hin6I GCGC 1 cut(s) 340
HinP1I GCGC 1 cut(s) 340
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 3 cut(s) 48, 79, 356
Hpy188I TCNGA 3 cut(s) 14, 336, 450
Hpy8I GTNNAC 3 cut(s) 48, 79, 356
HpyAV CCTTC 5 cut(s) 163, 168, 202, 226, 447
HpyCH4III ACNGT 1 cut(s) 126
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 1 cut(s) 349
HpyF10VI GCNNNNNNNGC 3 cut(s) 307, 346, 440
HpyF3I CTNAG 1 cut(s) 389
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 3 cut(s) 57, 133, 430
HspAI GCGC 1 cut(s) 340
Kzo9I GATC 3 cut(s) 5, 9, 136
LpnPI CCDG 9 cut(s) 47, 54, 59, 68, 77, 95, 178, 344, 422
Lsp1109I GCAGC 3 cut(s) 421, 427, 457
LweI GCATC 2 cut(s) 282, 457
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 250
MaeIII GTNAC 1 cut(s) 57
MalI GATC 3 cut(s) 7, 11, 138
MboI GATC 3 cut(s) 5, 9, 136
MboII GAAGA 6 cut(s) 116, 146, 281, 329, 332, 407
MluCI AATT 3 cut(s) 97, 184, 213
MmeI TCCRAC 1 cut(s) 438
MnlI CCTC 3 cut(s) 215, 322, 424
MseI TTAA 2 cut(s) 216, 228
MspA1I CMGCKG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
MwoI GCNNNNNNNGC 3 cut(s) 307, 346, 440
NdeII GATC 3 cut(s) 5, 9, 136
NlaIII CATG 3 cut(s) 57, 133, 430
NlaIV GGNNCC 1 cut(s) 462
NspV TTCGAA 1 cut(s) 161
PkrI GCNGC 4 cut(s) 436, 439, 442, 472
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 1 cut(s) 460
RsaI GTAC 2 cut(s) 170, 413
RsaNI GTAC 2 cut(s) 169, 412
SaqAI TTAA 2 cut(s) 216, 228
SatI GCNGC 4 cut(s) 435, 438, 441, 471
Sau3AI GATC 3 cut(s) 5, 9, 136
Sau96I GGNCC 1 cut(s) 460
ScaI AGTACT 1 cut(s) 170
ScrFI CCNGG 1 cut(s) 83
SetI ASST 8 cut(s) 78, 84, 151, 155, 226, 253, 385, 458
SfaNI GCATC 2 cut(s) 282, 457
SfcI CTRYAG 2 cut(s) 172, 190
SfuI TTCGAA 1 cut(s) 161
SinI GGWCC 1 cut(s) 460
Sse9I AATT 3 cut(s) 97, 184, 213
SsiI CCGC 1 cut(s) 438
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 126
TaiI ACGT 1 cut(s) 253
TaqI TCGA 2 cut(s) 8, 161
TasI AATT 3 cut(s) 97, 184, 213
TatI WGTACW 2 cut(s) 168, 411
TauI GCSGC 1 cut(s) 440
Tru1I TTAA 2 cut(s) 216, 228
Tru9I TTAA 2 cut(s) 216, 228
TseI GCWGC 3 cut(s) 434, 440, 470
TspDTI ATGAA 2 cut(s) 118, 386
VpaK11BI GGWCC 1 cut(s) 460
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XspI CTAG 1 cut(s) 179
ZrmI AGTACT 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.