pycom11g21750

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012497
Physical Location & Seq
Forward (+)
24802335 .. 24805032
2698 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g21750.5

Sequence Viewer

Length: 1008 bp
ATGGGTAAAGATCGAAACGGCAGCGTTTCAGAGAGACGAAGCAGGAGCTCCGAGAAAGAGGAAGAAACCGAAAGAAAATCCGAGAAAGCGCGACAAATTTCGGATTCCGAGGCCGACGAAGACGGGAAGCGCAGTAAATCCAGGAGAAAAGCGCGGGAAAGCTCGGAGTCCGGCGATGAAAAGCACGTGAAAAGAAGGAGGAGGAGGTCGCGGAGGCGGTACAGTAGCGAGGAGTATACGGATTCGGAGTCCGAGTCGGAATCGGAGGAGAGCGGCTCGGATTCGGAGTCGGAGAGTGATAGTGGTAGCGAGAGCGACGGCGACAGGAGACGGAAGAGGAGGAAAAGGAGAGAGAAAGATGATGATAGAGAAAGGAAGAGGAGGAAGAAGGAGAAGGAGAAGGAGAGGAAGAGGAGGAGGAGAGAGAAAGAGGAAGAGATGAAGAAGAAGAAGGAGAAGAGGAAGAAGAAGAGGAAGGAGAAGAAGGAGAAAGGAAAGGTAGGAGCGGTGACGAATTCGTGGGGAAAGTATGGGATCATCAGAGAAACTGACATGTGGAACAAACGACCAGAGTTCACAGCTTGGTTACAGGAAGTAAAACAGGTGAACCTGGAACATCTGGCAAATTGGGAAGAGAAGCAAATGTTCAAACAGTTCATGGAAGATCACAATACAGCTACCTTCCCTTCGAAAAAGTACTACAGCCTTGATAATTATTACAGGAATAAGATGGAAAAGGAAATTAAAAGAGGTTTTAAGAAGGTTGCGCCAACGGAACGTATTGTATTCAACGATGAGGAACAGAAAAGACAAGAAATGATGCAAGTGCGTGAAAAGCAAAAGGAAGAAGAAGTAGAGGCTCTGAAGCGCTCTATGCAGAGTGGACTGGCACAAGCAATGAAAGAACAAGCTCAACTCCGAGAAGAGATGGCTTACCAGTACAAGATTGGAAACATGGAGGCTGCCGCTGCTATTCAGAGAAGGTTGGACCCTGATGCTCCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

336

Amino Acids

40.36

Weight (kDa)

9.73

Isoelectric Point (pI)

97.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 273, 506
AccI GTMKAC 1 cut(s) 236
AccII CGCG 3 cut(s) 91, 154, 211
AciI CCGC 6 cut(s) 154, 211, 217, 273, 506, 966
AclWI GGATC 1 cut(s) 542
AcsI RAATTY 2 cut(s) 96, 514
AcuI CTGAAG 1 cut(s) 884
AcvI CACGTG 1 cut(s) 187
AfaI GTAC 3 cut(s) 221, 698, 941
AfeI AGCGCT 1 cut(s) 869
AflIII ACRYGT 1 cut(s) 552
AgsI TTSAA 2 cut(s) 649, 790
AjnI CCWGG 2 cut(s) 140, 609
AluBI AGCT 5 cut(s) 48, 162, 581, 677, 911
AluI AGCT 5 cut(s) 48, 162, 581, 677, 911
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 2 cut(s) 28, 322
AlwI GGATC 1 cut(s) 542
Aor51HI AGCGCT 1 cut(s) 869
AoxI GGCC 1 cut(s) 111
ApeKI GCWGC 3 cut(s) 21, 962, 968
ApoI RAATTY 2 cut(s) 96, 514
AspLEI GCGC 5 cut(s) 91, 132, 154, 769, 870
AspS9I GGNCC 1 cut(s) 988
AsuHPI GGTGA 2 cut(s) 520, 616
AsuII TTCGAA 1 cut(s) 689
AvaII GGWCC 1 cut(s) 988
BanII GRGCYC 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 187
BbsI GAAGAC 1 cut(s) 126
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 33, 949, 955
BccI CCATC 2 cut(s) 724, 922
BceAI ACGGC 2 cut(s) 34, 334
BciT130I CCWGG 2 cut(s) 142, 611
BcoDI GTCTC 2 cut(s) 28, 322
BfmI CTRYAG 1 cut(s) 700
BfoI RGCGCY 1 cut(s) 871
BisI GCNGC 5 cut(s) 22, 274, 963, 966, 969
BlsI GCNGC 5 cut(s) 23, 275, 964, 967, 970
BmcAI AGTACT 1 cut(s) 698
Bme1390I CCNGG 2 cut(s) 142, 611
Bme18I GGWCC 1 cut(s) 988
BmgT120I GGNCC 1 cut(s) 988
BmiI GGNNCC 1 cut(s) 990
BmrFI CCNGG 2 cut(s) 142, 611
BmsI GCATC 2 cut(s) 810, 985
BpiI GAAGAC 1 cut(s) 126
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bpu14I TTCGAA 1 cut(s) 689
BsaAI YACGTR 1 cut(s) 187
BsaJI CCNNGG 1 cut(s) 108
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bse1I ACTGG 2 cut(s) 891, 937
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 2 cut(s) 142, 611
BseDI CCNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 903
BseNI ACTGG 2 cut(s) 891, 937
BseRI GAGGAG 9 cut(s) 214, 217, 245, 281, 352, 394, 427, 430, 433
BseXI GCAGC 3 cut(s) 33, 949, 955
Bsh1236I CGCG 3 cut(s) 91, 154, 211
BshFI GGCC 1 cut(s) 113
BsiHKAI GWGCWC 1 cut(s) 50
BsiSI CCGG 1 cut(s) 171
BsmAI GTCTC 2 cut(s) 28, 322
BsmBI CGTCTC 2 cut(s) 28, 322
BsnI GGCC 1 cut(s) 113
Bsp119I TTCGAA 1 cut(s) 689
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 3 cut(s) 10, 534, 664
BspACI CCGC 6 cut(s) 154, 211, 217, 273, 506, 966
BspANI GGCC 1 cut(s) 113
BspFNI CGCG 3 cut(s) 91, 154, 211
BspLI GGNNCC 1 cut(s) 990
BspPI GGATC 1 cut(s) 542
BspT104I TTCGAA 1 cut(s) 689
BsrBI CCGCTC 2 cut(s) 273, 506
BsrDI GCAATG 1 cut(s) 903
BsrI ACTGG 2 cut(s) 891, 937
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 3 cut(s) 10, 534, 664
BssNAI GTATAC 1 cut(s) 237
Bst1107I GTATAC 1 cut(s) 237
Bst2UI CCWGG 2 cut(s) 142, 611
Bst4CI ACNGT 2 cut(s) 224, 654
Bst6I CTCTTC 8 cut(s) 329, 371, 404, 429, 452, 464, 627, 918
BstBAI YACGTR 1 cut(s) 187
BstBI TTCGAA 1 cut(s) 689
BstFNI CGCG 3 cut(s) 91, 154, 211
BstH2I RGCGCY 1 cut(s) 871
BstHHI GCGC 5 cut(s) 91, 132, 154, 769, 870
BstKTI GATC 3 cut(s) 13, 537, 667
BstMAI GTCTC 2 cut(s) 28, 322
BstMBI GATC 3 cut(s) 10, 534, 664
BstMWI GCNNNNNNNGC 3 cut(s) 835, 874, 968
BstNI CCWGG 2 cut(s) 142, 611
BstNSI RCATGY 1 cut(s) 556
BstSCI CCNGG 2 cut(s) 140, 609
BstSFI CTRYAG 1 cut(s) 700
BstUI CGCG 3 cut(s) 91, 154, 211
BstV1I GCAGC 3 cut(s) 33, 949, 955
BstV2I GAAGAC 1 cut(s) 126
BstZ17I GTATAC 1 cut(s) 237
BsuRI GGCC 1 cut(s) 113
BtgZI GCGATG 1 cut(s) 189
CfoI GCGC 5 cut(s) 91, 132, 154, 769, 870
Cfr13I GGNCC 1 cut(s) 988
Csp6I GTAC 3 cut(s) 220, 697, 940
CviAII CATG 3 cut(s) 553, 658, 955
CviQI GTAC 3 cut(s) 220, 697, 940
DpnI GATC 3 cut(s) 12, 536, 666
DpnII GATC 3 cut(s) 10, 534, 664
Eam1104I CTCTTC 8 cut(s) 329, 371, 404, 429, 452, 464, 627, 918
EarI CTCTTC 8 cut(s) 329, 371, 404, 429, 452, 464, 627, 918
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco47I GGWCC 1 cut(s) 988
Eco47III AGCGCT 1 cut(s) 869
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 884
Eco72I CACGTG 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 140, 609
EcoT38I GRGCYC 1 cut(s) 50
Esp3I CGTCTC 2 cut(s) 28, 322
FaeI CATG 3 cut(s) 556, 661, 958
FaiI YATR 6 cut(s) 237, 531, 554, 659, 875, 956
FatI CATG 3 cut(s) 552, 657, 954
FauI CCCGC 1 cut(s) 147
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 5 cut(s) 22, 274, 963, 966, 969
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 5 cut(s) 22, 274, 963, 966, 969
GlaI GCGC 5 cut(s) 90, 131, 153, 768, 869
GluI GCNGC 5 cut(s) 22, 274, 963, 966, 969
HaeII RGCGCY 1 cut(s) 871
HaeIII GGCC 1 cut(s) 113
HapII CCGG 1 cut(s) 171
HhaI GCGC 5 cut(s) 91, 132, 154, 769, 870
Hin1II CATG 3 cut(s) 556, 661, 958
Hin6I GCGC 5 cut(s) 89, 130, 152, 767, 868
HinP1I GCGC 5 cut(s) 89, 130, 152, 767, 868
HinfI GANTC 8 cut(s) 104, 167, 242, 248, 254, 260, 281, 287
HpaII CCGG 1 cut(s) 171
HphI GGTGA 2 cut(s) 520, 616
Hpy166II GTNNAC 4 cut(s) 237, 576, 607, 884
Hpy8I GTNNAC 4 cut(s) 237, 576, 607, 884
Hpy99I CGWCG 2 cut(s) 119, 320
HpyCH4III ACNGT 2 cut(s) 224, 654
HpyCH4IV ACGT 2 cut(s) 186, 778
HpyCH4V TGCA 2 cut(s) 823, 877
HpyF10VI GCNNNNNNNGC 3 cut(s) 835, 874, 968
HpySE526I ACGT 2 cut(s) 186, 778
Hsp92II CATG 3 cut(s) 556, 661, 958
HspAI GCGC 5 cut(s) 89, 130, 152, 767, 868
Kzo9I GATC 3 cut(s) 10, 534, 664
LmnI GCTCC 4 cut(s) 45, 53, 503, 1003
Lsp1109I GCAGC 3 cut(s) 33, 949, 955
LweI GCATC 2 cut(s) 810, 985
MaeII ACGT 2 cut(s) 186, 778
MaeIII GTNAC 2 cut(s) 508, 585
MalI GATC 3 cut(s) 12, 536, 666
MbiI CCGCTC 2 cut(s) 273, 506
MboI GATC 3 cut(s) 10, 534, 664
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 5 cut(s) 96, 514, 625, 712, 741
MlyI GAGTC 4 cut(s) 176, 257, 263, 296
MmeI TCCRAC 3 cut(s) 237, 270, 966
MseI TTAA 2 cut(s) 744, 756
MspA1I CMGCKG 1 cut(s) 968
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 142, 611
MvaI CCWGG 2 cut(s) 142, 611
MvnI CGCG 3 cut(s) 91, 154, 211
MwoI GCNNNNNNNGC 3 cut(s) 835, 874, 968
NdeII GATC 3 cut(s) 10, 534, 664
NlaIII CATG 3 cut(s) 556, 661, 958
NlaIV GGNNCC 1 cut(s) 990
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 1 cut(s) 556
NspV TTCGAA 1 cut(s) 689
PciI ACATGT 1 cut(s) 552
PfeI GAWTC 4 cut(s) 104, 242, 260, 281
PfoI TCCNGGA 1 cut(s) 140
PkrI GCNGC 5 cut(s) 23, 275, 964, 967, 970
PleI GAGTC 4 cut(s) 175, 256, 262, 295
PmaCI CACGTG 1 cut(s) 187
PmlI CACGTG 1 cut(s) 187
PpsI GAGTC 4 cut(s) 175, 256, 262, 295
Ppu21I YACGTR 1 cut(s) 187
PscI ACATGT 1 cut(s) 552
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 140, 609
PspCI CACGTG 1 cut(s) 187
PspGI CCWGG 2 cut(s) 140, 609
PspN4I GGNNCC 1 cut(s) 990
PspPI GGNCC 1 cut(s) 988
RsaI GTAC 3 cut(s) 221, 698, 941
RsaNI GTAC 3 cut(s) 220, 697, 940
SacI GAGCTC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 744, 756
SatI GCNGC 5 cut(s) 22, 274, 963, 966, 969
Sau3AI GATC 3 cut(s) 10, 534, 664
Sau96I GGNCC 1 cut(s) 988
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 4 cut(s) 176, 257, 263, 296
ScrFI CCNGG 2 cut(s) 142, 611
SduI GDGCHC 1 cut(s) 50
SfaNI GCATC 2 cut(s) 810, 985
SfcI CTRYAG 1 cut(s) 700
SfuI TTCGAA 1 cut(s) 689
SinI GGWCC 1 cut(s) 988
Sse9I AATT 5 cut(s) 96, 514, 625, 712, 741
SsiI CCGC 6 cut(s) 154, 211, 217, 273, 506, 966
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 140, 609
TaaI ACNGT 2 cut(s) 224, 654
TaiI ACGT 2 cut(s) 189, 781
TaqI TCGA 2 cut(s) 13, 689
TasI AATT 5 cut(s) 96, 514, 625, 712, 741
TatI WGTACW 2 cut(s) 696, 939
TauI GCSGC 2 cut(s) 276, 968
TfiI GAWTC 4 cut(s) 104, 242, 260, 281
Tru1I TTAA 2 cut(s) 744, 756
Tru9I TTAA 2 cut(s) 744, 756
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 3 cut(s) 21, 962, 968
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 4 cut(s) 192, 455, 646, 914
TspGWI ACGGA 3 cut(s) 254, 346, 788
VpaK11BI GGWCC 1 cut(s) 988
XapI RAATTY 2 cut(s) 96, 514
XceI RCATGY 1 cut(s) 556
XcmI CCANNNNNNNNNTGG 1 cut(s) 944
XmiI GTMKAC 1 cut(s) 236
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.