MD03G1225800.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0012497
Physical Location & Seq
Reverse (-)
31120751 .. 31124353
3603 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1225800.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGGTAAAGATCGAAACGGCAGCGTTTCAAATAGACGAAGCAGAAGTTCCGAGAAAGAGGAGAGACGCAGCAGAAGTTCCGAGAAAGAGGAAGAAAACGAGAGAAAATCCGAGAAAGCGAGCGAAATTTTGAATTCCGAGTCCGAAGAAGAAGACAGGAAACGCAGTAAATCTACAAGAAAAGAGCGGGAAATCTCTGATTCCGGGAATGAAAAGCACGTGAAAAGGGATAGACGACGGAGGAGATCCCGGAGGCAGTACAATAGCGAGGAGGGTACGGATTCGGAGTCCGAGTCGGAATCGGAGGAGAGCGGGTCGGATTCGGAGTCGGAGAGTGAGAGCGAGAGTGACGGGAGGAGGAAAAGGAGGAGGAGGAGAGAGAAAGACGAGGACAGAGAAAGGAAGAAGAGGAAGAGAGAGAAGGAAAGGAAGAGGAGGAGGAGAGAGAGGGAGGAAGAGAGGAAGAAGAAGGAGAAGAGAAAGAAGAAGAGGAAGGAGAAGAAGGAGAAAGGAAATGTAGGAGCGGTGACGAATTCGTGGGGGAAGTATGGGATCATCAGAGAAACTGATATGTGGAACAAACGACCAGAGTTCACAGCATGGTTACAGGAAGTAAAACAGGTGAACCTGGAACATCTGGCAAATTGGGAAGAGAAGCAGATGTTCAAACAGTTCATGGAAGATCACAATACAGCTACCTTCCCTTCGAAAAAGTACTACAGCCTTGATAATTACTACAGGCATAAAATGGAGAAGGAAATTAAAAGAGGTTTTAAGAAGGTTACGCCAACAGAACGTATTGTATTCAATGACGAAGAACAGAAACGGCAAGAAATGATGCGAGTGCGTGAAAAGCAAAAGGAAGAAGAAGTAGAGGCTCTGAAGCGCTCAATGCAGAGTGGACTGGCACAAGCAATGAAAGAGCAAGCTCAACTCAGGGAAGAGATGGCTTACCAGTACAAGATTGGAAACATGGAGGCTGCTGCTGCTATTCAGAGAAGGTTGGACCCTGATGCTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

342

Amino Acids

41.35

Weight (kDa)

9.76

Isoelectric Point (pI)

99.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 187, 312, 524
AciI CCGC 3 cut(s) 187, 312, 524
AclWI GGATC 2 cut(s) 240, 560
AcsI RAATTY 3 cut(s) 126, 133, 532
AcuI CTGAAG 1 cut(s) 902
AcvI CACGTG 1 cut(s) 220
AfaI GTAC 4 cut(s) 260, 277, 716, 959
AfeI AGCGCT 1 cut(s) 887
AgsI TTSAA 4 cut(s) 30, 133, 667, 808
AjnI CCWGG 1 cut(s) 627
AluBI AGCT 2 cut(s) 695, 929
AluI AGCT 2 cut(s) 695, 929
Alw26I GTCTC 1 cut(s) 58
AlwI GGATC 2 cut(s) 240, 560
Aor51HI AGCGCT 1 cut(s) 887
ApeKI GCWGC 6 cut(s) 21, 69, 980, 983, 986, 1016
ApoI RAATTY 3 cut(s) 126, 133, 532
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 1 cut(s) 1006
AsuC2I CCSGG 2 cut(s) 205, 250
AsuHPI GGTGA 2 cut(s) 538, 634
AsuII TTCGAA 1 cut(s) 707
AvaII GGWCC 1 cut(s) 1006
BbrPI CACGTG 1 cut(s) 220
BbsI GAAGAC 1 cut(s) 159
BbvI GCAGC 6 cut(s) 33, 81, 967, 970, 973, 1003
BccI CCATC 1 cut(s) 940
BceAI ACGGC 2 cut(s) 34, 842
BciT130I CCWGG 1 cut(s) 629
BcnI CCSGG 2 cut(s) 205, 250
BcoDI GTCTC 1 cut(s) 58
BfmI CTRYAG 2 cut(s) 718, 736
BfoI RGCGCY 1 cut(s) 889
BisI GCNGC 6 cut(s) 22, 70, 981, 984, 987, 1017
BlsI GCNGC 6 cut(s) 23, 71, 982, 985, 988, 1018
BmcAI AGTACT 1 cut(s) 716
Bme1390I CCNGG 3 cut(s) 205, 250, 629
Bme18I GGWCC 1 cut(s) 1006
BmgT120I GGNCC 1 cut(s) 1006
BmiI GGNNCC 1 cut(s) 1008
BmrFI CCNGG 3 cut(s) 205, 250, 629
BmsI GCATC 2 cut(s) 828, 1003
BpiI GAAGAC 1 cut(s) 159
Bpu14I TTCGAA 1 cut(s) 707
BpuMI CCSGG 2 cut(s) 205, 250
BsaAI YACGTR 1 cut(s) 220
BsaXI ACNNNNNCTCC 4 cut(s) 278, 299, 308, 329
Bse1I ACTGG 2 cut(s) 909, 955
Bse3DI GCAATG 1 cut(s) 921
BseBI CCWGG 1 cut(s) 629
BseMI GCAATG 1 cut(s) 921
BseMII CTCAG 1 cut(s) 949
BseNI ACTGG 2 cut(s) 909, 955
BseXI GCAGC 6 cut(s) 33, 81, 967, 970, 973, 1003
BsiSI CCGG 2 cut(s) 204, 250
BsmAI GTCTC 1 cut(s) 58
BsmBI CGTCTC 1 cut(s) 58
Bsp119I TTCGAA 1 cut(s) 707
Bsp143I GATC 4 cut(s) 10, 245, 552, 682
BspACI CCGC 3 cut(s) 187, 312, 524
BspCNI CTCAG 1 cut(s) 948
BspLI GGNNCC 1 cut(s) 1008
BspPI GGATC 2 cut(s) 240, 560
BspT104I TTCGAA 1 cut(s) 707
BsrBI CCGCTC 3 cut(s) 187, 312, 524
BsrDI GCAATG 1 cut(s) 921
BsrI ACTGG 2 cut(s) 909, 955
BssMI GATC 4 cut(s) 10, 245, 552, 682
Bst2UI CCWGG 1 cut(s) 629
Bst4CI ACNGT 1 cut(s) 672
Bst6I CTCTTC 8 cut(s) 401, 407, 425, 450, 470, 482, 645, 936
BstBAI YACGTR 1 cut(s) 220
BstBI TTCGAA 1 cut(s) 707
BstC8I GCNNGC 2 cut(s) 121, 927
BstDEI CTNAG 1 cut(s) 935
BstH2I RGCGCY 1 cut(s) 889
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 4 cut(s) 13, 248, 555, 685
BstMAI GTCTC 1 cut(s) 58
BstMBI GATC 4 cut(s) 10, 245, 552, 682
BstMWI GCNNNNNNNGC 3 cut(s) 853, 892, 986
BstNI CCWGG 1 cut(s) 629
BstSCI CCNGG 3 cut(s) 203, 248, 627
BstSFI CTRYAG 2 cut(s) 718, 736
BstV1I GCAGC 6 cut(s) 33, 81, 967, 970, 973, 1003
BstV2I GAAGAC 1 cut(s) 159
BstX2I RGATCY 1 cut(s) 245
BstYI RGATCY 1 cut(s) 245
Cac8I GCNNGC 2 cut(s) 121, 927
CfoI GCGC 1 cut(s) 888
Cfr13I GGNCC 1 cut(s) 1006
CseI GACGC 1 cut(s) 75
Csp6I GTAC 4 cut(s) 259, 276, 715, 958
CviAII CATG 3 cut(s) 600, 676, 973
CviJI RGCY 6 cut(s) 695, 723, 878, 929, 950, 980
CviKI_1 RGCY 6 cut(s) 695, 723, 878, 929, 950, 980
CviQI GTAC 4 cut(s) 259, 276, 715, 958
DdeI CTNAG 1 cut(s) 935
DpnI GATC 4 cut(s) 12, 247, 554, 684
DpnII GATC 4 cut(s) 10, 245, 552, 682
Eam1104I CTCTTC 8 cut(s) 401, 407, 425, 450, 470, 482, 645, 936
EarI CTCTTC 8 cut(s) 401, 407, 425, 450, 470, 482, 645, 936
Eco47I GGWCC 1 cut(s) 1006
Eco47III AGCGCT 1 cut(s) 887
Eco57I CTGAAG 1 cut(s) 902
Eco72I CACGTG 1 cut(s) 220
EcoRI GAATTC 2 cut(s) 133, 532
EcoRII CCWGG 1 cut(s) 627
Esp3I CGTCTC 1 cut(s) 58
FaeI CATG 3 cut(s) 603, 679, 976
FaiI YATR 6 cut(s) 549, 572, 601, 677, 744, 974
FatI CATG 3 cut(s) 599, 675, 972
FauI CCCGC 2 cut(s) 180, 305
Fnu4HI GCNGC 6 cut(s) 22, 70, 981, 984, 987, 1017
Fsp4HI GCNGC 6 cut(s) 22, 70, 981, 984, 987, 1017
GlaI GCGC 1 cut(s) 887
GluI GCNGC 6 cut(s) 22, 70, 981, 984, 987, 1017
HaeII RGCGCY 1 cut(s) 889
HapII CCGG 2 cut(s) 204, 250
HgaI GACGC 1 cut(s) 75
HhaI GCGC 1 cut(s) 888
Hin1II CATG 3 cut(s) 603, 679, 976
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HinfI GANTC 8 cut(s) 140, 200, 281, 287, 293, 299, 320, 326
HpaII CCGG 2 cut(s) 204, 250
HphI GGTGA 2 cut(s) 538, 634
Hpy166II GTNNAC 3 cut(s) 594, 625, 902
Hpy8I GTNNAC 3 cut(s) 594, 625, 902
Hpy99I CGWCG 1 cut(s) 240
HpyAV CCTTC 9 cut(s) 415, 463, 487, 496, 709, 714, 748, 772, 993
HpyCH4III ACNGT 1 cut(s) 672
HpyCH4IV ACGT 2 cut(s) 219, 796
HpyCH4V TGCA 1 cut(s) 895
HpyF10VI GCNNNNNNNGC 3 cut(s) 853, 892, 986
HpyF3I CTNAG 1 cut(s) 935
HpySE526I ACGT 2 cut(s) 219, 796
Hsp92II CATG 3 cut(s) 603, 679, 976
HspAI GCGC 1 cut(s) 886
Kzo9I GATC 4 cut(s) 10, 245, 552, 682
LmnI GCTCC 1 cut(s) 521
Lsp1109I GCAGC 6 cut(s) 33, 81, 967, 970, 973, 1003
LweI GCATC 2 cut(s) 828, 1003
MaeII ACGT 2 cut(s) 219, 796
MaeIII GTNAC 4 cut(s) 347, 526, 603, 781
MalI GATC 4 cut(s) 12, 247, 554, 684
MbiI CCGCTC 3 cut(s) 187, 312, 524
MboI GATC 4 cut(s) 10, 245, 552, 682
MflI RGATCY 1 cut(s) 245
MluCI AATT 6 cut(s) 126, 133, 532, 643, 730, 759
MlyI GAGTC 4 cut(s) 149, 296, 302, 335
MmeI TCCRAC 4 cut(s) 276, 297, 309, 984
MseI TTAA 2 cut(s) 762, 774
MspI CCGG 2 cut(s) 204, 250
MspR9I CCNGG 3 cut(s) 205, 250, 629
MvaI CCWGG 1 cut(s) 629
MwoI GCNNNNNNNGC 3 cut(s) 853, 892, 986
NciI CCSGG 2 cut(s) 205, 250
NdeII GATC 4 cut(s) 10, 245, 552, 682
NlaIII CATG 3 cut(s) 603, 679, 976
NlaIV GGNNCC 1 cut(s) 1008
NmuCI GTSAC 2 cut(s) 347, 526
NspV TTCGAA 1 cut(s) 707
PfeI GAWTC 4 cut(s) 200, 281, 299, 320
PfoI TCCNGGA 2 cut(s) 203, 248
PkrI GCNGC 6 cut(s) 23, 71, 982, 985, 988, 1018
PleI GAGTC 4 cut(s) 148, 295, 301, 334
PmaCI CACGTG 1 cut(s) 220
PmlI CACGTG 1 cut(s) 220
PpsI GAGTC 4 cut(s) 148, 295, 301, 334
Ppu21I YACGTR 1 cut(s) 220
Psp6I CCWGG 1 cut(s) 627
PspCI CACGTG 1 cut(s) 220
PspGI CCWGG 1 cut(s) 627
PspN4I GGNNCC 1 cut(s) 1008
PspPI GGNCC 1 cut(s) 1006
PsuI RGATCY 1 cut(s) 245
RsaI GTAC 4 cut(s) 260, 277, 716, 959
RsaNI GTAC 4 cut(s) 259, 276, 715, 958
SaqAI TTAA 2 cut(s) 762, 774
SatI GCNGC 6 cut(s) 22, 70, 981, 984, 987, 1017
Sau3AI GATC 4 cut(s) 10, 245, 552, 682
Sau96I GGNCC 1 cut(s) 1006
ScaI AGTACT 1 cut(s) 716
SchI GAGTC 4 cut(s) 149, 296, 302, 335
ScrFI CCNGG 3 cut(s) 205, 250, 629
SfaNI GCATC 2 cut(s) 828, 1003
SfcI CTRYAG 2 cut(s) 718, 736
SfuI TTCGAA 1 cut(s) 707
SinI GGWCC 1 cut(s) 1006
Sse9I AATT 6 cut(s) 126, 133, 532, 643, 730, 759
SsiI CCGC 3 cut(s) 187, 312, 524
StyD4I CCNGG 3 cut(s) 203, 248, 627
TaaI ACNGT 1 cut(s) 672
TaiI ACGT 2 cut(s) 222, 799
TaqI TCGA 2 cut(s) 13, 707
TasI AATT 6 cut(s) 126, 133, 532, 643, 730, 759
TatI WGTACW 3 cut(s) 258, 714, 957
TfiI GAWTC 4 cut(s) 200, 281, 299, 320
Tru1I TTAA 2 cut(s) 762, 774
Tru9I TTAA 2 cut(s) 762, 774
TseFI GTSAC 2 cut(s) 347, 526
TseI GCWGC 6 cut(s) 21, 69, 980, 983, 986, 1016
Tsp45I GTSAC 2 cut(s) 347, 526
TspDTI ATGAA 3 cut(s) 225, 664, 932
TspGWI ACGGA 2 cut(s) 253, 293
VpaK11BI GGWCC 1 cut(s) 1006
XapI RAATTY 3 cut(s) 126, 133, 532
XcmI CCANNNNNNNNNTGG 1 cut(s) 962
ZrmI AGTACT 1 cut(s) 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.