Rroxscaffold_1G00046310

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012497
Physical Location & Seq
Forward (+)
65469142 .. 65473115
3974 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046310.1

Sequence Viewer

Length: 1008 bp
ATGGGAAAAGATCGAAACGGCGCCGTTCTGGAGAAAGCAAGCAAAACCTCAGACAAAGACGACGGAAGCGAAAGAAAATCCGGCAAATCCACAGAGCTTTCCGATTCCAGCGACTCCGGAGAGGATACCAGGCGCAGTAAATCGAGAAGAAAAGCGCGGGAAGTCTCCGAATCGAGCGATGAGGAGAAGCACGCGCGGAGGAGGAGGAGGAGGAAGTCGCGGCGGCGGTACAGTAGCAGCGAAGACGATTCGGATTCGGAGTCGGAAGAGTCCGAGGAGAGCGGGTCGGATTCAGGTTCGGAGTCGGTGAGTGAGGGCGGTAGCGATAGCGAGAGTGAGCGGCGGCTGAAGAGGAAGGAGAGGAAGAGGAGGAGAGAGAAAGAGGAAAGGAGGAAGAGAGAGAAGGAGAAGAAGAGGAGGAGGAGAGAGAGAGAAGAGGAGAAGAAGAAGAAGAAGGAGAGGAGGAAGAAGAGGAGGAAGGAGAAGAAGGAGAAAGGTAAGAAAGGAGCGGTCACAGATTCTTGGGGGAAGTATGGGATTATCAGAGAGACTGATATGTGGAACAAACGACCGGAGTTTACTGCATGGTTGGCAGAAGTAAAACAGGTGAACCTGGAGCATCTGGCAAATTGGGAAGAGAAGCAGATGTTCAAACAGTTCATGGAAGATCACAACACAGCTACATTTCCTTCCAAAAAGTATTATAGCCTTGATGCTTATTACAGGCATAAAATGGAAAAGGAAATGAAAAAAGGTATTAAAAAGGTTGTGGAAACAGAGCGTACTGTATTCAATGATGAGGAAGTGCGACGGCAAGAAATGATGCGAGTCCGTGAAAAACAAAAGGAAGAAGAAGTAGAAGCTCTGAAGCGCTCTATGCAGAGTGGACTGGCACAAGCAATGAAAGAGCAAGCTCAACTCCGGGAAGAGATGGCTTACCAGTACAAGATCGGAAACTTTGAGGCTGCTGCTGCAATCCAGAGAAGGTTGGACCCTGATGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

39.95

Weight (kDa)

9.72

Isoelectric Point (pI)

88.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccBSI CCGCTC 3 cut(s) 282, 340, 509
AccII CGCG 4 cut(s) 157, 194, 196, 220
AccIII TCCGGA 1 cut(s) 116
AcuI CTGAAG 2 cut(s) 368, 887
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 3 cut(s) 230, 784, 944
AfeI AGCGCT 1 cut(s) 872
AgsI TTSAA 2 cut(s) 652, 793
AjnI CCWGG 2 cut(s) 128, 612
AluBI AGCT 4 cut(s) 97, 680, 863, 914
AluI AGCT 4 cut(s) 97, 680, 863, 914
Alw26I GTCTC 2 cut(s) 169, 542
Aor13HI TCCGGA 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 872
ApeKI GCWGC 4 cut(s) 237, 965, 968, 971
AspLEI GCGC 5 cut(s) 23, 135, 157, 196, 873
AspS9I GGNCC 1 cut(s) 991
AsuC2I CCSGG 1 cut(s) 923
AsuHPI GGTGA 2 cut(s) 319, 619
AvaII GGWCC 1 cut(s) 991
BanI GGYRCC 1 cut(s) 20
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 4 cut(s) 249, 952, 955, 958
BccI CCATC 1 cut(s) 925
BceAI ACGGC 3 cut(s) 8, 34, 827
BciT130I CCWGG 2 cut(s) 130, 614
BciVI GTATCC 1 cut(s) 118
BcnI CCSGG 1 cut(s) 923
BcoDI GTCTC 2 cut(s) 169, 542
BfoI RGCGCY 2 cut(s) 24, 874
BfuI GTATCC 1 cut(s) 118
BisI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 966, 969, 972
BlsI GCNGC 8 cut(s) 222, 225, 239, 342, 345, 967, 970, 973
Bme1390I CCNGG 3 cut(s) 130, 614, 923
Bme18I GGWCC 1 cut(s) 991
BmgT120I GGNCC 1 cut(s) 991
BmiI GGNNCC 2 cut(s) 22, 993
BmrFI CCNGG 3 cut(s) 130, 614, 923
BmsI GCATC 4 cut(s) 628, 703, 813, 988
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 50, 635
BpuMI CCSGG 1 cut(s) 923
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 116, 571
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bse1I ACTGG 2 cut(s) 894, 940
Bse3DI GCAATG 1 cut(s) 906
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 2 cut(s) 130, 614
BseDI CCNNGG 1 cut(s) 273
BseMI GCAATG 1 cut(s) 906
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 894, 940
BseXI GCAGC 4 cut(s) 249, 952, 955, 958
Bsh1236I CGCG 4 cut(s) 157, 194, 196, 220
Bsh1285I CGRYCG 1 cut(s) 572
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 572
BsiSI CCGG 4 cut(s) 81, 117, 572, 922
BsmAI GTCTC 2 cut(s) 169, 542
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 3 cut(s) 10, 667, 948
BspCNI CTCAG 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 4 cut(s) 157, 194, 196, 220
BspLI GGNNCC 2 cut(s) 22, 993
BspT107I GGYRCC 1 cut(s) 20
BsrBI CCGCTC 3 cut(s) 282, 340, 509
BsrDI GCAATG 1 cut(s) 906
BsrI ACTGG 2 cut(s) 894, 940
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 3 cut(s) 10, 667, 948
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 130, 614
Bst4CI ACNGT 3 cut(s) 233, 657, 787
Bst6I CTCTTC 9 cut(s) 261, 344, 359, 389, 407, 429, 464, 630, 921
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 40, 192, 912
BstDEI CTNAG 1 cut(s) 49
BstFNI CGCG 4 cut(s) 157, 194, 196, 220
BstH2I RGCGCY 2 cut(s) 24, 874
BstHHI GCGC 5 cut(s) 23, 135, 157, 196, 873
BstKTI GATC 3 cut(s) 13, 670, 951
BstMAI GTCTC 2 cut(s) 169, 542
BstMBI GATC 3 cut(s) 10, 667, 948
BstMCI CGRYCG 1 cut(s) 572
BstMWI GCNNNNNNNGC 3 cut(s) 590, 877, 971
BstNI CCWGG 2 cut(s) 130, 614
BstSCI CCNGG 3 cut(s) 128, 612, 921
BstUI CGCG 4 cut(s) 157, 194, 196, 220
BstV1I GCAGC 4 cut(s) 249, 952, 955, 958
BstV2I GAAGAC 1 cut(s) 249
BsuI GTATCC 1 cut(s) 118
BtgZI GCGATG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 40, 192, 912
CfoI GCGC 5 cut(s) 23, 135, 157, 196, 873
Cfr13I GGNCC 1 cut(s) 991
Csp6I GTAC 3 cut(s) 229, 783, 943
CviAII CATG 2 cut(s) 585, 661
CviJI RGCY 8 cut(s) 97, 346, 680, 708, 863, 914, 935, 965
CviKI_1 RGCY 8 cut(s) 97, 346, 680, 708, 863, 914, 935, 965
CviQI GTAC 3 cut(s) 229, 783, 943
DdeI CTNAG 1 cut(s) 49
DinI GGCGCC 1 cut(s) 22
DpnI GATC 3 cut(s) 12, 669, 950
DpnII GATC 3 cut(s) 10, 667, 948
Eam1104I CTCTTC 9 cut(s) 261, 344, 359, 389, 407, 429, 464, 630, 921
EarI CTCTTC 9 cut(s) 261, 344, 359, 389, 407, 429, 464, 630, 921
Eco47I GGWCC 1 cut(s) 991
Eco47III AGCGCT 1 cut(s) 872
Eco57I CTGAAG 2 cut(s) 368, 887
EcoRII CCWGG 2 cut(s) 128, 612
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 2 cut(s) 588, 664
FaiI YATR 7 cut(s) 534, 557, 586, 662, 705, 729, 878
FatI CATG 2 cut(s) 584, 660
FauI CCCGC 2 cut(s) 150, 275
Fnu4HI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 966, 969, 972
Fsp4HI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 966, 969, 972
GlaI GCGC 5 cut(s) 22, 134, 156, 195, 872
GluI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 966, 969, 972
GsuI CTGGAG 2 cut(s) 50, 635
HaeII RGCGCY 2 cut(s) 24, 874
HapII CCGG 4 cut(s) 81, 117, 572, 922
HhaI GCGC 5 cut(s) 23, 135, 157, 196, 873
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 588, 664
Hin6I GCGC 5 cut(s) 21, 133, 155, 194, 871
HinP1I GCGC 5 cut(s) 21, 133, 155, 194, 871
HpaII CCGG 4 cut(s) 81, 117, 572, 922
HphI GGTGA 2 cut(s) 319, 619
Hpy166II GTNNAC 3 cut(s) 579, 610, 887
Hpy188III TCNNGA 4 cut(s) 29, 117, 144, 979
Hpy8I GTNNAC 3 cut(s) 579, 610, 887
Hpy99I CGWCG 2 cut(s) 65, 813
HpyAV CCTTC 7 cut(s) 349, 397, 448, 472, 481, 699, 978
HpyCH4III ACNGT 3 cut(s) 233, 657, 787
HpyCH4V TGCA 4 cut(s) 584, 880, 974, 1001
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 877, 971
HpyF3I CTNAG 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 588, 664
HspAI GCGC 5 cut(s) 21, 133, 155, 194, 871
KasI GGCGCC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 116
Kzo9I GATC 3 cut(s) 10, 667, 948
LmnI GCTCC 2 cut(s) 506, 616
Lsp1109I GCAGC 4 cut(s) 249, 952, 955, 958
LweI GCATC 4 cut(s) 628, 703, 813, 988
MaeIII GTNAC 1 cut(s) 511
MalI GATC 3 cut(s) 12, 669, 950
MbiI CCGCTC 3 cut(s) 282, 340, 509
MboI GATC 3 cut(s) 10, 667, 948
MluCI AATT 1 cut(s) 628
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 5 cut(s) 107, 269, 278, 311, 837
MmeI TCCRAC 3 cut(s) 243, 267, 969
MroI TCCGGA 1 cut(s) 116
MseI TTAA 1 cut(s) 759
MspI CCGG 4 cut(s) 81, 117, 572, 922
MspR9I CCNGG 3 cut(s) 130, 614, 923
MvaI CCWGG 2 cut(s) 130, 614
MvnI CGCG 4 cut(s) 157, 194, 196, 220
MwoI GCNNNNNNNGC 3 cut(s) 590, 877, 971
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 1 cut(s) 923
NdeII GATC 3 cut(s) 10, 667, 948
NlaIII CATG 2 cut(s) 588, 664
NlaIV GGNNCC 2 cut(s) 22, 993
NmuCI GTSAC 1 cut(s) 511
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 6 cut(s) 104, 170, 248, 254, 290, 518
PfoI TCCNGGA 1 cut(s) 921
PkrI GCNGC 8 cut(s) 222, 225, 239, 342, 345, 967, 970, 973
PleI GAGTC 5 cut(s) 107, 268, 277, 310, 836
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 5 cut(s) 107, 268, 277, 310, 836
Psp6I CCWGG 2 cut(s) 128, 612
PspGI CCWGG 2 cut(s) 128, 612
PspN4I GGNNCC 2 cut(s) 22, 993
PspPI GGNCC 1 cut(s) 991
RsaI GTAC 3 cut(s) 230, 784, 944
RsaNI GTAC 3 cut(s) 229, 783, 943
SaqAI TTAA 1 cut(s) 759
SatI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 966, 969, 972
Sau3AI GATC 3 cut(s) 10, 667, 948
Sau96I GGNCC 1 cut(s) 991
SchI GAGTC 5 cut(s) 107, 269, 278, 311, 837
ScrFI CCNGG 3 cut(s) 130, 614, 923
SfaNI GCATC 4 cut(s) 628, 703, 813, 988
SfoI GGCGCC 1 cut(s) 22
SinI GGWCC 1 cut(s) 991
Sse9I AATT 1 cut(s) 628
SspDI GGCGCC 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 128, 612, 921
TaaI ACNGT 3 cut(s) 233, 657, 787
TaqI TCGA 3 cut(s) 13, 143, 173
TasI AATT 1 cut(s) 628
TatI WGTACW 1 cut(s) 942
TauI GCSGC 4 cut(s) 223, 226, 343, 346
TfiI GAWTC 6 cut(s) 104, 170, 248, 254, 290, 518
Tru1I TTAA 1 cut(s) 759
Tru9I TTAA 1 cut(s) 759
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 4 cut(s) 237, 965, 968, 971
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 3 cut(s) 649, 761, 917
TspGWI ACGGA 2 cut(s) 78, 821
VpaK11BI GGWCC 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.