Rh5AG234000

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012497
Physical Location & Seq
Reverse (-)
28357108 .. 28361069
3962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG234000.1

Sequence Viewer

Length: 1005 bp
ATGGGAAAAGATCGAAACGGCGCCGTTCTGGAGAAAGCAAGCAAAACCTCAGACAAAGACGACGGAAGCGAAAGAAAATCCGGCAAATCCACAGAGCTTTCCGATTCCAGCGACTCCGGAGAGGAAACCAGGCGCAGTAAATCGAGAAGAAAAGCGCGGGAAGTCTCCGAATCGAGCGATGAGGAGAAGCCCGCGCGGAGGGGGAGGAAGAGGAAGTCGCGGCGGCGGTACAGTAGCAGCGACGACGATTCGGATTCGGAGTCGGAAGAGTCCGAGGAGAGCGGGTCGGATTCGGGTTCGGAGTCGGTGAGCGAGGGCGGTAGTGATAGCGAGAGTGAGCGGCGGCGGAAGAGGAGGGAGAGGAAGAGGAGGAGAGAGAAAGAGGAGAGGAGGAGGAGAGAGAAGGAGAAGAAGAGGAGGAGGAGAGAGAGAGAAGAGGAGAAGAAGAAGAAGGAGAGGAGGAAGAAGAGGAGGAAGGAGAAGAAGGAGAAAGGTAAGAAAGGAGCGGTCACAGATTCTTGGGGGAAGTATGGGATTATCAGAGAGACTGATATGTGGAACAAACGACCGGAGTTTACTGCATGGTTGGCAGAAGTAAAACAGGTGAACCTGGAGCATCTGGCAAATTGGGAAGAGAAGCAGATGTTCAAACAGTTCATGGAAGATCACAACACAGCTACATTCCCTTCCAAAAAGTATTATAGCCTTGATGCTTATTACAGGCATAAAATGGAAAAGGAAATGAAAAAAGGTATTAAAAAGGTTGTGGAAACAGAGCGTACTGTATTCAATGATGAGGAAGTGCGACGGCAAGAAATGATGCGAGTCCGTGAAAAACAAAAGGAAGAAGAAGTAGAAGCCCTGAAGCGCTCTATGCAGAGTGGACTGGCACAAGCAATGAAAGAGCAAGCTCAACTCCGGGAAGAGATGGCTTACCAGTACAAGATCGGAAACTTTGAGGCTGCTGCTGCAATCCAGAGAAGGTTGGACCCTGATGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

334

Amino Acids

39.75

Weight (kDa)

9.71

Isoelectric Point (pI)

88.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccBSI CCGCTC 3 cut(s) 282, 340, 506
AccII CGCG 4 cut(s) 157, 194, 196, 220
AccIII TCCGGA 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 884
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 3 cut(s) 230, 781, 941
AfeI AGCGCT 1 cut(s) 869
AfiI CCNNNNNNNGG 1 cut(s) 198
AgsI TTSAA 2 cut(s) 649, 790
AjnI CCWGG 2 cut(s) 128, 609
AluBI AGCT 3 cut(s) 97, 677, 911
AluI AGCT 3 cut(s) 97, 677, 911
Alw26I GTCTC 2 cut(s) 169, 539
Aor13HI TCCGGA 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 869
ApeKI GCWGC 4 cut(s) 237, 962, 965, 968
AspLEI GCGC 5 cut(s) 23, 135, 157, 196, 870
AspS9I GGNCC 1 cut(s) 988
AsuC2I CCSGG 1 cut(s) 920
AsuHPI GGTGA 2 cut(s) 319, 616
AvaII GGWCC 1 cut(s) 988
BanI GGYRCC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 249, 949, 952, 955
BccI CCATC 1 cut(s) 922
BceAI ACGGC 3 cut(s) 8, 34, 824
BciT130I CCWGG 2 cut(s) 130, 611
BcnI CCSGG 1 cut(s) 920
BcoDI GTCTC 2 cut(s) 169, 539
BfoI RGCGCY 2 cut(s) 24, 871
BisI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 963, 966, 969
BlsI GCNGC 8 cut(s) 222, 225, 239, 342, 345, 964, 967, 970
Bme1390I CCNGG 3 cut(s) 130, 611, 920
Bme18I GGWCC 1 cut(s) 988
BmgT120I GGNCC 1 cut(s) 988
BmiI GGNNCC 2 cut(s) 22, 990
BmrFI CCNGG 3 cut(s) 130, 611, 920
BmsI GCATC 4 cut(s) 625, 700, 810, 985
BpmI CTGGAG 2 cut(s) 50, 632
BpuMI CCSGG 1 cut(s) 920
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 273
BsaWI WCCGGW 2 cut(s) 116, 568
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 198
Bse1I ACTGG 2 cut(s) 891, 937
Bse3DI GCAATG 1 cut(s) 903
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 2 cut(s) 130, 611
BseDI CCNNGG 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 198
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 891, 937
BseXI GCAGC 4 cut(s) 249, 949, 952, 955
Bsh1236I CGCG 4 cut(s) 157, 194, 196, 220
Bsh1285I CGRYCG 1 cut(s) 569
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 569
BsiSI CCGG 4 cut(s) 81, 117, 569, 919
BslI CCNNNNNNNGG 1 cut(s) 198
BsmAI GTCTC 2 cut(s) 169, 539
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 3 cut(s) 10, 664, 945
BspCNI CTCAG 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 4 cut(s) 157, 194, 196, 220
BspLI GGNNCC 2 cut(s) 22, 990
BspT107I GGYRCC 1 cut(s) 20
BsrBI CCGCTC 3 cut(s) 282, 340, 506
BsrDI GCAATG 1 cut(s) 903
BsrI ACTGG 2 cut(s) 891, 937
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 3 cut(s) 10, 664, 945
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 130, 611
Bst4CI ACNGT 3 cut(s) 233, 654, 784
Bst6I CTCTTC 9 cut(s) 203, 261, 344, 359, 407, 429, 461, 627, 918
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 40, 192, 909
BstDEI CTNAG 1 cut(s) 49
BstFNI CGCG 4 cut(s) 157, 194, 196, 220
BstH2I RGCGCY 2 cut(s) 24, 871
BstHHI GCGC 5 cut(s) 23, 135, 157, 196, 870
BstKTI GATC 3 cut(s) 13, 667, 948
BstMAI GTCTC 2 cut(s) 169, 539
BstMBI GATC 3 cut(s) 10, 664, 945
BstMCI CGRYCG 1 cut(s) 569
BstMWI GCNNNNNNNGC 3 cut(s) 587, 874, 968
BstNI CCWGG 2 cut(s) 130, 611
BstSCI CCNGG 3 cut(s) 128, 609, 918
BstUI CGCG 4 cut(s) 157, 194, 196, 220
BstV1I GCAGC 4 cut(s) 249, 949, 952, 955
BtgZI GCGATG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 40, 192, 909
CfoI GCGC 5 cut(s) 23, 135, 157, 196, 870
Cfr13I GGNCC 1 cut(s) 988
Csp6I GTAC 3 cut(s) 229, 780, 940
CviAII CATG 2 cut(s) 582, 658
CviJI RGCY 8 cut(s) 97, 190, 677, 705, 860, 911, 932, 962
CviKI_1 RGCY 8 cut(s) 97, 190, 677, 705, 860, 911, 932, 962
CviQI GTAC 3 cut(s) 229, 780, 940
DdeI CTNAG 1 cut(s) 49
DinI GGCGCC 1 cut(s) 22
DpnI GATC 3 cut(s) 12, 666, 947
DpnII GATC 3 cut(s) 10, 664, 945
Eam1104I CTCTTC 9 cut(s) 203, 261, 344, 359, 407, 429, 461, 627, 918
EarI CTCTTC 9 cut(s) 203, 261, 344, 359, 407, 429, 461, 627, 918
EciI GGCGGA 1 cut(s) 361
Eco47I GGWCC 1 cut(s) 988
Eco47III AGCGCT 1 cut(s) 869
Eco57I CTGAAG 1 cut(s) 884
EcoRII CCWGG 2 cut(s) 128, 609
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 2 cut(s) 585, 661
FaiI YATR 7 cut(s) 531, 554, 583, 659, 702, 726, 875
FatI CATG 2 cut(s) 581, 657
FauI CCCGC 3 cut(s) 150, 199, 275
Fnu4HI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 963, 966, 969
Fsp4HI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 963, 966, 969
GlaI GCGC 5 cut(s) 22, 134, 156, 195, 869
GluI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 963, 966, 969
GsuI CTGGAG 2 cut(s) 50, 632
HaeII RGCGCY 2 cut(s) 24, 871
HapII CCGG 4 cut(s) 81, 117, 569, 919
HhaI GCGC 5 cut(s) 23, 135, 157, 196, 870
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 2 cut(s) 585, 661
Hin6I GCGC 5 cut(s) 21, 133, 155, 194, 868
HinP1I GCGC 5 cut(s) 21, 133, 155, 194, 868
HpaII CCGG 4 cut(s) 81, 117, 569, 919
HphI GGTGA 2 cut(s) 319, 616
Hpy166II GTNNAC 3 cut(s) 576, 607, 884
Hpy188III TCNNGA 4 cut(s) 29, 117, 144, 976
Hpy8I GTNNAC 3 cut(s) 576, 607, 884
Hpy99I CGWCG 4 cut(s) 65, 245, 248, 810
HpyAV CCTTC 6 cut(s) 397, 445, 469, 478, 696, 975
HpyCH4III ACNGT 3 cut(s) 233, 654, 784
HpyCH4V TGCA 4 cut(s) 581, 877, 971, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 587, 874, 968
HpyF3I CTNAG 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 2 cut(s) 585, 661
HspAI GCGC 5 cut(s) 21, 133, 155, 194, 868
KasI GGCGCC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 116
Kzo9I GATC 3 cut(s) 10, 664, 945
LmnI GCTCC 2 cut(s) 503, 613
Lsp1109I GCAGC 4 cut(s) 249, 949, 952, 955
LweI GCATC 4 cut(s) 625, 700, 810, 985
MaeIII GTNAC 1 cut(s) 508
MalI GATC 3 cut(s) 12, 666, 947
MbiI CCGCTC 3 cut(s) 282, 340, 506
MboI GATC 3 cut(s) 10, 664, 945
MluCI AATT 1 cut(s) 625
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 5 cut(s) 107, 269, 278, 311, 834
MmeI TCCRAC 3 cut(s) 243, 267, 966
MroI TCCGGA 1 cut(s) 116
MseI TTAA 1 cut(s) 756
MspI CCGG 4 cut(s) 81, 117, 569, 919
MspR9I CCNGG 3 cut(s) 130, 611, 920
MvaI CCWGG 2 cut(s) 130, 611
MvnI CGCG 4 cut(s) 157, 194, 196, 220
MwoI GCNNNNNNNGC 3 cut(s) 587, 874, 968
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 1 cut(s) 920
NdeII GATC 3 cut(s) 10, 664, 945
NlaIII CATG 2 cut(s) 585, 661
NlaIV GGNNCC 2 cut(s) 22, 990
NmuCI GTSAC 1 cut(s) 508
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 6 cut(s) 104, 170, 248, 254, 290, 515
PfoI TCCNGGA 1 cut(s) 918
PkrI GCNGC 8 cut(s) 222, 225, 239, 342, 345, 964, 967, 970
PleI GAGTC 5 cut(s) 107, 268, 277, 310, 833
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 5 cut(s) 107, 268, 277, 310, 833
Psp6I CCWGG 2 cut(s) 128, 609
PspGI CCWGG 2 cut(s) 128, 609
PspN4I GGNNCC 2 cut(s) 22, 990
PspPI GGNCC 1 cut(s) 988
RsaI GTAC 3 cut(s) 230, 781, 941
RsaNI GTAC 3 cut(s) 229, 780, 940
SaqAI TTAA 1 cut(s) 756
SatI GCNGC 8 cut(s) 221, 224, 238, 341, 344, 963, 966, 969
Sau3AI GATC 3 cut(s) 10, 664, 945
Sau96I GGNCC 1 cut(s) 988
SchI GAGTC 5 cut(s) 107, 269, 278, 311, 834
ScrFI CCNGG 3 cut(s) 130, 611, 920
SfaNI GCATC 4 cut(s) 625, 700, 810, 985
SfoI GGCGCC 1 cut(s) 22
SinI GGWCC 1 cut(s) 988
Sse9I AATT 1 cut(s) 625
SspDI GGCGCC 1 cut(s) 20
StyD4I CCNGG 3 cut(s) 128, 609, 918
TaaI ACNGT 3 cut(s) 233, 654, 784
TaqI TCGA 3 cut(s) 13, 143, 173
TasI AATT 1 cut(s) 625
TatI WGTACW 1 cut(s) 939
TauI GCSGC 4 cut(s) 223, 226, 343, 346
TfiI GAWTC 6 cut(s) 104, 170, 248, 254, 290, 515
Tru1I TTAA 1 cut(s) 756
Tru9I TTAA 1 cut(s) 756
TseFI GTSAC 1 cut(s) 508
TseI GCWGC 4 cut(s) 237, 962, 965, 968
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 3 cut(s) 646, 758, 914
TspGWI ACGGA 2 cut(s) 78, 818
VpaK11BI GGWCC 1 cut(s) 988
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.