MD11G1245300.v1.1

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0012497
Physical Location & Seq
Forward (+)
35607936 .. 35611051
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1245300.v1.1.491

Sequence Viewer

Length: 1044 bp
ATGGGTAAAGATCGAAACGGCAGCGTTTCAGAGAGACGAAGCAGGAGCTCGGAGAAAGAGGAGAGACGAAGCAGAAGCTCCGAGAAAGAGGAAGAAACCGAAAGAAAATCCGAGAAAGCGCGAGAAATTTCGGATTCCGAGACCGACGAAGACAGGAAGCGAAGTAAATCCAGGAGAAAAGCGCGGGAAAGCTCGGAGTCCAGCGATGAAAAGCACGTGAAAAGAAGGAGGAGGAGTTCGCGGAGGCGGTACAGTAGCGAGGAGGATACGGATTCGGAGTCCGAGTTGGAATCGGAGGAGAGCGGCTCGGATTCGGAGTCGGAGAGTGATAGTGGTAGCGAGAGCGACGGCGACAGGAGACGGAAGAGGAGGAAAATGAGAGAGAAAGATGATGATAGAGAAAGGAAGAGGAGGAAGAGAGAGAAGGAGAAGGAGAAGGAGAGGAAGAGGAGGAGGAGAGAGAAAGAGGAAGAGAGGAAGAAGAAGAAGGAGAAGAGAAAGAAGAAGAGGAAGGAAAAGAAGGAGAAAGGAAAGGTAGGAGCGGTAACGAATTCGTGGGGGAAGTATGGGATCATTAGAGAAACTGACATGTGGAACAAACGACCAGAGTTTACAGCATGGTTACAGGAAGTAAAACAGGTGAACCTGGAACATCTGGCAAATTGGGAAGAGAAGCAAATGTTCAAACAGTTCATGGAAGATCACAATACAGCTACCTTCCCTTCGAAAAAGTACTACAGCCTTGATAATTATTACAGGAATAAGATGGAAAAGGAAATTAAAAGAGGTTTTAAGAAGGTTGCGCCAACAGAACGTATTGTATTCAACGATGAGGAACAGAAAAGACAAGAAATGATGCGAGTGCGTGAAAAGCAAAAGGAAGAAGAAGTAGAGGCTCTGAAGCGCTCTATGCAGAGTGGACTGGCACAAGCAATGAAAGAACAAGCTCAACTCCGAGAAGAGATGGCTTACCAGTACAAGATTGGAAACATGGAGGCTGCCGCTGCTATTCAGAGAAGGTTGGACCCTGATGCTGCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

41.97

Weight (kDa)

9.73

Isoelectric Point (pI)

98.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 303, 542
AccII CGCG 3 cut(s) 121, 184, 241
AciI CCGC 6 cut(s) 184, 241, 247, 303, 542, 1002
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 2 cut(s) 126, 550
AcuI CTGAAG 1 cut(s) 920
AcvI CACGTG 1 cut(s) 217
AfaI GTAC 3 cut(s) 251, 734, 977
AfeI AGCGCT 1 cut(s) 905
AflIII ACRYGT 1 cut(s) 588
AgsI TTSAA 2 cut(s) 685, 826
AjnI CCWGG 2 cut(s) 170, 645
AloI GAACNNNNNNTCC 2 cut(s) 220, 252
AluBI AGCT 5 cut(s) 48, 78, 192, 713, 947
AluI AGCT 5 cut(s) 48, 78, 192, 713, 947
Alw21I GWGCWC 1 cut(s) 50
Alw26I GTCTC 4 cut(s) 28, 58, 134, 352
AlwI GGATC 1 cut(s) 578
Aor51HI AGCGCT 1 cut(s) 905
ApeKI GCWGC 4 cut(s) 21, 998, 1004, 1034
ApoI RAATTY 2 cut(s) 126, 550
AspLEI GCGC 4 cut(s) 121, 184, 805, 906
AspS9I GGNCC 1 cut(s) 1024
AsuHPI GGTGA 1 cut(s) 652
AsuII TTCGAA 1 cut(s) 725
AvaII GGWCC 1 cut(s) 1024
BanII GRGCYC 1 cut(s) 50
BbrPI CACGTG 1 cut(s) 217
BbsI GAAGAC 1 cut(s) 156
Bbv12I GWGCWC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 33, 985, 991, 1021
BccI CCATC 2 cut(s) 760, 958
BceAI ACGGC 2 cut(s) 34, 364
BciT130I CCWGG 2 cut(s) 172, 647
BciVI GTATCC 1 cut(s) 259
BcoDI GTCTC 4 cut(s) 28, 58, 134, 352
BfmI CTRYAG 1 cut(s) 736
BfoI RGCGCY 1 cut(s) 907
BfuI GTATCC 1 cut(s) 259
BisI GCNGC 6 cut(s) 22, 304, 999, 1002, 1005, 1035
BlsI GCNGC 6 cut(s) 23, 305, 1000, 1003, 1006, 1036
BmcAI AGTACT 1 cut(s) 734
Bme1390I CCNGG 2 cut(s) 172, 647
Bme18I GGWCC 1 cut(s) 1024
BmgT120I GGNCC 1 cut(s) 1024
BmiI GGNNCC 1 cut(s) 1026
BmrFI CCNGG 2 cut(s) 172, 647
BmsI GCATC 2 cut(s) 846, 1021
BpiI GAAGAC 1 cut(s) 156
BplI GAGNNNNNCTC 2 cut(s) 290, 322
Bpu14I TTCGAA 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 217
BsaI GGTCTC 1 cut(s) 134
BsaXI ACNNNNNCTCC 4 cut(s) 220, 250, 269, 299
Bse1I ACTGG 2 cut(s) 927, 973
Bse3DI GCAATG 1 cut(s) 939
BseBI CCWGG 2 cut(s) 172, 647
BseMI GCAATG 1 cut(s) 939
BseNI ACTGG 2 cut(s) 927, 973
BseXI GCAGC 4 cut(s) 33, 985, 991, 1021
Bsh1236I CGCG 3 cut(s) 121, 184, 241
BsiHKAI GWGCWC 1 cut(s) 50
BsmAI GTCTC 4 cut(s) 28, 58, 134, 352
BsmBI CGTCTC 3 cut(s) 28, 58, 352
Bso31I GGTCTC 1 cut(s) 134
Bsp119I TTCGAA 1 cut(s) 725
Bsp1286I GDGCHC 1 cut(s) 50
Bsp143I GATC 3 cut(s) 10, 570, 700
BspACI CCGC 6 cut(s) 184, 241, 247, 303, 542, 1002
BspFNI CGCG 3 cut(s) 121, 184, 241
BspLI GGNNCC 1 cut(s) 1026
BspPI GGATC 1 cut(s) 578
BspT104I TTCGAA 1 cut(s) 725
BspTNI GGTCTC 1 cut(s) 134
BsrBI CCGCTC 2 cut(s) 303, 542
BsrDI GCAATG 1 cut(s) 939
BsrI ACTGG 2 cut(s) 927, 973
BssMI GATC 3 cut(s) 10, 570, 700
Bst2UI CCWGG 2 cut(s) 172, 647
Bst4CI ACNGT 2 cut(s) 254, 690
Bst6I CTCTTC 9 cut(s) 359, 401, 410, 440, 465, 488, 500, 663, 954
BstBAI YACGTR 1 cut(s) 217
BstBI TTCGAA 1 cut(s) 725
BstFNI CGCG 3 cut(s) 121, 184, 241
BstH2I RGCGCY 1 cut(s) 907
BstHHI GCGC 4 cut(s) 121, 184, 805, 906
BstKTI GATC 3 cut(s) 13, 573, 703
BstMAI GTCTC 4 cut(s) 28, 58, 134, 352
BstMBI GATC 3 cut(s) 10, 570, 700
BstMWI GCNNNNNNNGC 3 cut(s) 871, 910, 1004
BstNI CCWGG 2 cut(s) 172, 647
BstNSI RCATGY 1 cut(s) 592
BstSCI CCNGG 2 cut(s) 170, 645
BstSFI CTRYAG 1 cut(s) 736
BstUI CGCG 3 cut(s) 121, 184, 241
BstV1I GCAGC 4 cut(s) 33, 985, 991, 1021
BstV2I GAAGAC 1 cut(s) 156
BsuI GTATCC 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 219
CfoI GCGC 4 cut(s) 121, 184, 805, 906
Cfr13I GGNCC 1 cut(s) 1024
Csp6I GTAC 3 cut(s) 250, 733, 976
CviAII CATG 4 cut(s) 589, 618, 694, 991
CviQI GTAC 3 cut(s) 250, 733, 976
DpnI GATC 3 cut(s) 12, 572, 702
DpnII GATC 3 cut(s) 10, 570, 700
Eam1104I CTCTTC 9 cut(s) 359, 401, 410, 440, 465, 488, 500, 663, 954
EarI CTCTTC 9 cut(s) 359, 401, 410, 440, 465, 488, 500, 663, 954
Ecl136II GAGCTC 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 50
Eco31I GGTCTC 1 cut(s) 134
Eco47I GGWCC 1 cut(s) 1024
Eco47III AGCGCT 1 cut(s) 905
Eco53kI GAGCTC 1 cut(s) 48
Eco57I CTGAAG 1 cut(s) 920
Eco72I CACGTG 1 cut(s) 217
EcoICRI GAGCTC 1 cut(s) 48
EcoRI GAATTC 1 cut(s) 550
EcoRII CCWGG 2 cut(s) 170, 645
EcoT38I GRGCYC 1 cut(s) 50
Esp3I CGTCTC 3 cut(s) 28, 58, 352
FaeI CATG 4 cut(s) 592, 621, 697, 994
FaiI YATR 6 cut(s) 567, 590, 619, 695, 911, 992
FatI CATG 4 cut(s) 588, 617, 693, 990
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 6 cut(s) 22, 304, 999, 1002, 1005, 1035
FriOI GRGCYC 1 cut(s) 50
Fsp4HI GCNGC 6 cut(s) 22, 304, 999, 1002, 1005, 1035
GlaI GCGC 4 cut(s) 120, 183, 804, 905
GluI GCNGC 6 cut(s) 22, 304, 999, 1002, 1005, 1035
HaeII RGCGCY 1 cut(s) 907
HhaI GCGC 4 cut(s) 121, 184, 805, 906
Hin1II CATG 4 cut(s) 592, 621, 697, 994
Hin6I GCGC 4 cut(s) 119, 182, 803, 904
HinP1I GCGC 4 cut(s) 119, 182, 803, 904
HinfI GANTC 7 cut(s) 134, 197, 272, 278, 290, 311, 317
HphI GGTGA 1 cut(s) 652
Hpy166II GTNNAC 3 cut(s) 612, 643, 920
Hpy8I GTNNAC 3 cut(s) 612, 643, 920
Hpy99I CGWCG 2 cut(s) 149, 350
HpyCH4III ACNGT 2 cut(s) 254, 690
HpyCH4IV ACGT 2 cut(s) 216, 814
HpyCH4V TGCA 1 cut(s) 913
HpyF10VI GCNNNNNNNGC 3 cut(s) 871, 910, 1004
HpySE526I ACGT 2 cut(s) 216, 814
Hsp92II CATG 4 cut(s) 592, 621, 697, 994
HspAI GCGC 4 cut(s) 119, 182, 803, 904
Kzo9I GATC 3 cut(s) 10, 570, 700
LmnI GCTCC 3 cut(s) 45, 83, 539
Lsp1109I GCAGC 4 cut(s) 33, 985, 991, 1021
LweI GCATC 2 cut(s) 846, 1021
MaeII ACGT 2 cut(s) 216, 814
MaeIII GTNAC 2 cut(s) 544, 621
MalI GATC 3 cut(s) 12, 572, 702
MbiI CCGCTC 2 cut(s) 303, 542
MboI GATC 3 cut(s) 10, 570, 700
MhlI GDGCHC 1 cut(s) 50
MluCI AATT 5 cut(s) 126, 550, 661, 748, 777
MlyI GAGTC 3 cut(s) 206, 287, 326
MmeI TCCRAC 3 cut(s) 267, 300, 1002
MseI TTAA 2 cut(s) 780, 792
MspA1I CMGCKG 1 cut(s) 1004
MspR9I CCNGG 2 cut(s) 172, 647
MvaI CCWGG 2 cut(s) 172, 647
MvnI CGCG 3 cut(s) 121, 184, 241
MwoI GCNNNNNNNGC 3 cut(s) 871, 910, 1004
NdeII GATC 3 cut(s) 10, 570, 700
NlaIII CATG 4 cut(s) 592, 621, 697, 994
NlaIV GGNNCC 1 cut(s) 1026
NspI RCATGY 1 cut(s) 592
NspV TTCGAA 1 cut(s) 725
PciI ACATGT 1 cut(s) 588
PfeI GAWTC 4 cut(s) 134, 272, 290, 311
PfoI TCCNGGA 1 cut(s) 170
PkrI GCNGC 6 cut(s) 23, 305, 1000, 1003, 1006, 1036
PleI GAGTC 3 cut(s) 205, 286, 325
PmaCI CACGTG 1 cut(s) 217
PmlI CACGTG 1 cut(s) 217
PpsI GAGTC 3 cut(s) 205, 286, 325
Ppu21I YACGTR 1 cut(s) 217
PscI ACATGT 1 cut(s) 588
Psp124BI GAGCTC 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 170, 645
PspCI CACGTG 1 cut(s) 217
PspGI CCWGG 2 cut(s) 170, 645
PspN4I GGNNCC 1 cut(s) 1026
PspPI GGNCC 1 cut(s) 1024
RsaI GTAC 3 cut(s) 251, 734, 977
RsaNI GTAC 3 cut(s) 250, 733, 976
SacI GAGCTC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 780, 792
SatI GCNGC 6 cut(s) 22, 304, 999, 1002, 1005, 1035
Sau3AI GATC 3 cut(s) 10, 570, 700
Sau96I GGNCC 1 cut(s) 1024
ScaI AGTACT 1 cut(s) 734
SchI GAGTC 3 cut(s) 206, 287, 326
ScrFI CCNGG 2 cut(s) 172, 647
SduI GDGCHC 1 cut(s) 50
SfaNI GCATC 2 cut(s) 846, 1021
SfcI CTRYAG 1 cut(s) 736
SfuI TTCGAA 1 cut(s) 725
SinI GGWCC 1 cut(s) 1024
Sse9I AATT 5 cut(s) 126, 550, 661, 748, 777
SsiI CCGC 6 cut(s) 184, 241, 247, 303, 542, 1002
SstI GAGCTC 1 cut(s) 50
StyD4I CCNGG 2 cut(s) 170, 645
TaaI ACNGT 2 cut(s) 254, 690
TaiI ACGT 2 cut(s) 219, 817
TaqI TCGA 2 cut(s) 13, 725
TaqII GACCGA 1 cut(s) 158
TasI AATT 5 cut(s) 126, 550, 661, 748, 777
TatI WGTACW 2 cut(s) 732, 975
TauI GCSGC 2 cut(s) 306, 1004
TfiI GAWTC 4 cut(s) 134, 272, 290, 311
Tru1I TTAA 2 cut(s) 780, 792
Tru9I TTAA 2 cut(s) 780, 792
TseI GCWGC 4 cut(s) 21, 998, 1004, 1034
TspDTI ATGAA 3 cut(s) 222, 682, 950
TspGWI ACGGA 2 cut(s) 284, 376
VpaK11BI GGWCC 1 cut(s) 1024
XapI RAATTY 2 cut(s) 126, 550
XceI RCATGY 1 cut(s) 592
XcmI CCANNNNNNNNNTGG 1 cut(s) 980
ZrmI AGTACT 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.