RLG00000033509

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012497
Physical Location & Seq
Reverse (-)
28270607 .. 28274308
3702 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033509

Sequence Viewer

Length: 999 bp
ATGGGAAAAGATCGAAACGGCGCCGTTCTGGAGAAAGCAAGCAAAACCTCAGACAAAGACGACGGAAGCGAAAGAAAACCCGGCAAATCCACAGAGCTTTCCGTTTCCAGCGACTCCGGAGAGGAAACCAGGCGCAGTAAATCGAGAAGAAAAGCGCGGGAAGTCTCCGAATCGAGCGATGAGGAGAAGCACGCGCGGAGGAGGAGGAAGAGGAAGTCGCGGCGGCGGTACAGTAGCAGCGACGACGATTCGGAGTCGGAAGAGTCCGAGGAGAGCGGGTCGGATTCGGGTTCGGAGTCGGTGAGTGAGGGCGGTAGCGATAGCGAGAGTGAGCGGCGGCGGAAGAGGAGGGAGAGGAAGAGGAGGAGAGAGAAAGAGGAGAGGAGGAGGAGAGAGAAGGAGAAGAAGAGGAGGAGGAGAGAGAGAGAAGAGGAGAAGAAGAAGAAGGAGAGGAGGAAGAAGAGGAGGAAGGAGAAGAAGGAGAAAGGTAAGAAAGGAGCGGTCACAGATTCTTGGGGGAAGTATGGGATTATCAGAGAGACTGATATGTGGAACAAACGACCGGAGTTTACTGCGTGGTTGGCAGAAGTAAAACAGGTGAACCTGGAGCATCTGGCAAATTGGGAAGAGAAGCAGATGTTCAAACAGTTCATGGAAGATCACAACACAGCTACATTCCCTTCCAAAAAGTATTATAGCCTTGATGCTTATTACAGGCATAAAATGGAAAAGGAAATGAAAAAAGGTATTAAAAAGGTTGTGGAAACAGAGCGTACTGTATTCAATGATGAGGAAGTGCGACGGCAAGAAATGATGCGAGTCCGTGAAAAACAAAAGGAAGAAGAAGTAGAAGCTCTGAAGCGCTCTATGCAGAGTGGACTGGCACAAGCAATGAAAGAGCAAGCTCAACTCCGGGAAGAGATGGCTTACCAGTACAAGATCGGAAACTTTGAGGCTGCTGCTGCAATCCAGAGAAGGTTGGACCCTGATGCAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

333

Amino Acids

39.68

Weight (kDa)

9.81

Isoelectric Point (pI)

91.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 20
AccBSI CCGCTC 3 cut(s) 276, 334, 500
AccII CGCG 4 cut(s) 157, 194, 196, 220
AccIII TCCGGA 1 cut(s) 116
AcuI CTGAAG 1 cut(s) 878
AcyI GRCGYC 1 cut(s) 21
AfaI GTAC 3 cut(s) 230, 775, 935
AfeI AGCGCT 1 cut(s) 863
AgsI TTSAA 2 cut(s) 643, 784
AjnI CCWGG 2 cut(s) 128, 603
AluBI AGCT 4 cut(s) 97, 671, 854, 905
AluI AGCT 4 cut(s) 97, 671, 854, 905
Alw26I GTCTC 2 cut(s) 169, 533
Aor13HI TCCGGA 1 cut(s) 116
Aor51HI AGCGCT 1 cut(s) 863
ApeKI GCWGC 4 cut(s) 237, 956, 959, 962
AspLEI GCGC 5 cut(s) 23, 135, 157, 196, 864
AspS9I GGNCC 1 cut(s) 982
AsuC2I CCSGG 2 cut(s) 81, 914
AsuHPI GGTGA 2 cut(s) 313, 610
AvaII GGWCC 1 cut(s) 982
BanI GGYRCC 1 cut(s) 20
BbvI GCAGC 4 cut(s) 249, 943, 946, 949
BccI CCATC 1 cut(s) 916
BceAI ACGGC 3 cut(s) 8, 34, 818
BciT130I CCWGG 2 cut(s) 130, 605
BcnI CCSGG 2 cut(s) 81, 914
BcoDI GTCTC 2 cut(s) 169, 533
BfoI RGCGCY 2 cut(s) 24, 865
BisI GCNGC 8 cut(s) 221, 224, 238, 335, 338, 957, 960, 963
BlsI GCNGC 8 cut(s) 222, 225, 239, 336, 339, 958, 961, 964
Bme1390I CCNGG 4 cut(s) 81, 130, 605, 914
Bme18I GGWCC 1 cut(s) 982
BmgT120I GGNCC 1 cut(s) 982
BmiI GGNNCC 2 cut(s) 22, 984
BmrFI CCNGG 4 cut(s) 81, 130, 605, 914
BmsI GCATC 4 cut(s) 619, 694, 804, 979
BpmI CTGGAG 2 cut(s) 50, 626
BpuMI CCSGG 2 cut(s) 81, 914
BsaHI GRCGYC 1 cut(s) 21
BsaJI CCNNGG 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 116, 562
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse1I ACTGG 2 cut(s) 885, 931
Bse3DI GCAATG 1 cut(s) 897
BseAI TCCGGA 1 cut(s) 116
BseBI CCWGG 2 cut(s) 130, 605
BseDI CCNNGG 1 cut(s) 267
BseMI GCAATG 1 cut(s) 897
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 2 cut(s) 885, 931
BseXI GCAGC 4 cut(s) 249, 943, 946, 949
Bsh1236I CGCG 4 cut(s) 157, 194, 196, 220
Bsh1285I CGRYCG 1 cut(s) 563
BshNI GGYRCC 1 cut(s) 20
BsiEI CGRYCG 1 cut(s) 563
BsiSI CCGG 4 cut(s) 81, 117, 563, 913
BsmAI GTCTC 2 cut(s) 169, 533
Bsp13I TCCGGA 1 cut(s) 116
Bsp143I GATC 3 cut(s) 10, 658, 939
BspCNI CTCAG 1 cut(s) 62
BspEI TCCGGA 1 cut(s) 116
BspFNI CGCG 4 cut(s) 157, 194, 196, 220
BspLI GGNNCC 2 cut(s) 22, 984
BspT107I GGYRCC 1 cut(s) 20
BsrBI CCGCTC 3 cut(s) 276, 334, 500
BsrDI GCAATG 1 cut(s) 897
BsrI ACTGG 2 cut(s) 885, 931
BssECI CCNNGG 1 cut(s) 267
BssMI GATC 3 cut(s) 10, 658, 939
BssNI GRCGYC 1 cut(s) 21
Bst2UI CCWGG 2 cut(s) 130, 605
Bst4CI ACNGT 3 cut(s) 233, 648, 778
Bst6I CTCTTC 9 cut(s) 203, 255, 338, 353, 401, 423, 455, 621, 912
BstACI GRCGYC 1 cut(s) 21
BstC8I GCNNGC 3 cut(s) 40, 192, 903
BstDEI CTNAG 1 cut(s) 49
BstFNI CGCG 4 cut(s) 157, 194, 196, 220
BstH2I RGCGCY 2 cut(s) 24, 865
BstHHI GCGC 5 cut(s) 23, 135, 157, 196, 864
BstKTI GATC 3 cut(s) 13, 661, 942
BstMAI GTCTC 2 cut(s) 169, 533
BstMBI GATC 3 cut(s) 10, 658, 939
BstMCI CGRYCG 1 cut(s) 563
BstMWI GCNNNNNNNGC 3 cut(s) 581, 868, 962
BstNI CCWGG 2 cut(s) 130, 605
BstSCI CCNGG 4 cut(s) 79, 128, 603, 912
BstUI CGCG 4 cut(s) 157, 194, 196, 220
BstV1I GCAGC 4 cut(s) 249, 943, 946, 949
BtgZI GCGATG 1 cut(s) 192
Cac8I GCNNGC 3 cut(s) 40, 192, 903
CfoI GCGC 5 cut(s) 23, 135, 157, 196, 864
Cfr13I GGNCC 1 cut(s) 982
Csp6I GTAC 3 cut(s) 229, 774, 934
CviAII CATG 1 cut(s) 652
CviJI RGCY 7 cut(s) 97, 671, 699, 854, 905, 926, 956
CviKI_1 RGCY 7 cut(s) 97, 671, 699, 854, 905, 926, 956
CviQI GTAC 3 cut(s) 229, 774, 934
DdeI CTNAG 1 cut(s) 49
DinI GGCGCC 1 cut(s) 22
DpnI GATC 3 cut(s) 12, 660, 941
DpnII GATC 3 cut(s) 10, 658, 939
Eam1104I CTCTTC 9 cut(s) 203, 255, 338, 353, 401, 423, 455, 621, 912
EarI CTCTTC 9 cut(s) 203, 255, 338, 353, 401, 423, 455, 621, 912
EciI GGCGGA 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 982
Eco47III AGCGCT 1 cut(s) 863
Eco57I CTGAAG 1 cut(s) 878
EcoRII CCWGG 2 cut(s) 128, 603
EgeI GGCGCC 1 cut(s) 22
EheI GGCGCC 1 cut(s) 22
FaeI CATG 1 cut(s) 655
FaiI YATR 6 cut(s) 525, 548, 653, 696, 720, 869
FatI CATG 1 cut(s) 651
FauI CCCGC 2 cut(s) 150, 269
Fnu4HI GCNGC 8 cut(s) 221, 224, 238, 335, 338, 957, 960, 963
Fsp4HI GCNGC 8 cut(s) 221, 224, 238, 335, 338, 957, 960, 963
GlaI GCGC 5 cut(s) 22, 134, 156, 195, 863
GluI GCNGC 8 cut(s) 221, 224, 238, 335, 338, 957, 960, 963
GsuI CTGGAG 2 cut(s) 50, 626
HaeII RGCGCY 2 cut(s) 24, 865
HapII CCGG 4 cut(s) 81, 117, 563, 913
HhaI GCGC 5 cut(s) 23, 135, 157, 196, 864
Hin1I GRCGYC 1 cut(s) 21
Hin1II CATG 1 cut(s) 655
Hin6I GCGC 5 cut(s) 21, 133, 155, 194, 862
HinP1I GCGC 5 cut(s) 21, 133, 155, 194, 862
HinfI GANTC 9 cut(s) 113, 170, 248, 254, 263, 284, 296, 509, 819
HpaII CCGG 4 cut(s) 81, 117, 563, 913
HphI GGTGA 2 cut(s) 313, 610
Hpy166II GTNNAC 3 cut(s) 570, 601, 878
Hpy188III TCNNGA 4 cut(s) 29, 117, 144, 970
Hpy8I GTNNAC 3 cut(s) 570, 601, 878
Hpy99I CGWCG 4 cut(s) 65, 245, 248, 804
HpyAV CCTTC 6 cut(s) 391, 439, 463, 472, 690, 969
HpyCH4III ACNGT 3 cut(s) 233, 648, 778
HpyCH4V TGCA 3 cut(s) 871, 965, 992
HpyF10VI GCNNNNNNNGC 3 cut(s) 581, 868, 962
HpyF3I CTNAG 1 cut(s) 49
Hsp92I GRCGYC 1 cut(s) 21
Hsp92II CATG 1 cut(s) 655
HspAI GCGC 5 cut(s) 21, 133, 155, 194, 862
KasI GGCGCC 1 cut(s) 20
Kpn2I TCCGGA 1 cut(s) 116
Kzo9I GATC 3 cut(s) 10, 658, 939
LmnI GCTCC 2 cut(s) 497, 607
Lsp1109I GCAGC 4 cut(s) 249, 943, 946, 949
LweI GCATC 4 cut(s) 619, 694, 804, 979
MaeIII GTNAC 1 cut(s) 502
MalI GATC 3 cut(s) 12, 660, 941
MbiI CCGCTC 3 cut(s) 276, 334, 500
MboI GATC 3 cut(s) 10, 658, 939
MluCI AATT 1 cut(s) 619
Mly113I GGCGCC 1 cut(s) 21
MlyI GAGTC 5 cut(s) 107, 263, 272, 305, 828
MmeI TCCRAC 3 cut(s) 237, 261, 960
MroI TCCGGA 1 cut(s) 116
MseI TTAA 1 cut(s) 750
MspI CCGG 4 cut(s) 81, 117, 563, 913
MspR9I CCNGG 4 cut(s) 81, 130, 605, 914
MvaI CCWGG 2 cut(s) 130, 605
MvnI CGCG 4 cut(s) 157, 194, 196, 220
MwoI GCNNNNNNNGC 3 cut(s) 581, 868, 962
NarI GGCGCC 1 cut(s) 21
NciI CCSGG 2 cut(s) 81, 914
NdeII GATC 3 cut(s) 10, 658, 939
NlaIII CATG 1 cut(s) 655
NlaIV GGNNCC 2 cut(s) 22, 984
NmuCI GTSAC 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 4 cut(s) 170, 248, 284, 509
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 8 cut(s) 222, 225, 239, 336, 339, 958, 961, 964
PleI GAGTC 5 cut(s) 107, 262, 271, 304, 827
PluTI GGCGCC 1 cut(s) 24
PpsI GAGTC 5 cut(s) 107, 262, 271, 304, 827
Psp6I CCWGG 2 cut(s) 128, 603
PspGI CCWGG 2 cut(s) 128, 603
PspN4I GGNNCC 2 cut(s) 22, 984
PspPI GGNCC 1 cut(s) 982
RsaI GTAC 3 cut(s) 230, 775, 935
RsaNI GTAC 3 cut(s) 229, 774, 934
SaqAI TTAA 1 cut(s) 750
SatI GCNGC 8 cut(s) 221, 224, 238, 335, 338, 957, 960, 963
Sau3AI GATC 3 cut(s) 10, 658, 939
Sau96I GGNCC 1 cut(s) 982
SchI GAGTC 5 cut(s) 107, 263, 272, 305, 828
ScrFI CCNGG 4 cut(s) 81, 130, 605, 914
SfaNI GCATC 4 cut(s) 619, 694, 804, 979
SfoI GGCGCC 1 cut(s) 22
SinI GGWCC 1 cut(s) 982
Sse9I AATT 1 cut(s) 619
SspDI GGCGCC 1 cut(s) 20
StyD4I CCNGG 4 cut(s) 79, 128, 603, 912
TaaI ACNGT 3 cut(s) 233, 648, 778
TaqI TCGA 3 cut(s) 13, 143, 173
TasI AATT 1 cut(s) 619
TatI WGTACW 1 cut(s) 933
TauI GCSGC 4 cut(s) 223, 226, 337, 340
TfiI GAWTC 4 cut(s) 170, 248, 284, 509
Tru1I TTAA 1 cut(s) 750
Tru9I TTAA 1 cut(s) 750
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 4 cut(s) 237, 956, 959, 962
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 3 cut(s) 640, 752, 908
TspGWI ACGGA 3 cut(s) 78, 91, 812
VpaK11BI GGWCC 1 cut(s) 982
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.