Rorug05G0143100

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012497
Physical Location & Seq
Reverse (-)
13173214 .. 13174333
1120 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0143100.1

Sequence Viewer

Length: 294 bp
ATGCTCCTTTTAAGGAACCCTCTCTACCTCTTGGTTCTTTTTGTTGCATATTTCCTTACAAAGGCCTTATGGGTACAGATGGACATTGCGGGAGAGTTCCGACATGGCGCTCTTTCAGGAATACTATCCATTTCATCGAAGTTTCTTCCCACTGTTATGGATATCCTGAGACAGCTTGCAGAAGAAGCTCAAGGGCCTCTAATACCTGAAGCGCCAAGACAGCCAGTTTCACTTGCTTCTCAAAGTTATAGAAGTGAAACCTCAGCCAAATCCAGTAATGAGCTCAGTTCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.72

Weight (kDa)

6.55

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sey1_3HB PF20428 1 - 62 3.4e-06 Sey1 three-helix bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012497)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G53800
fragaria_vesca FvH4_3g20100
malus_domestica MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1
prunus_persica Prupe.4G183600_v2.0.a1
pyrus_communis pycom03g17360 pycom11g21750
rosa_chinensis RchiOBHm_Chr5g0033901
rosa_laevigata RLG00000033509
rosa_multiflora Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005
rosa_roxburghii Rroxscaffold_1G00046310
rosa_rugosa Rorug05G0143100
rosa_samantha Rh5AG234000 Rh5BG234600 Rh5DG241500
rosa_wichuraiana Rw5G021530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 89
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 75
AfiI CCNNNNNNNGG 1 cut(s) 61
AluBI AGCT 3 cut(s) 175, 188, 283
AluI AGCT 3 cut(s) 175, 188, 283
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 1 cut(s) 163
AlwNI CAGNNNCTG 1 cut(s) 291
AoxI GGCC 2 cut(s) 63, 194
AspLEI GCGC 2 cut(s) 110, 214
AspS9I GGNCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvCI CCTCAGC 1 cut(s) 262
BccI CCATC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 163
BfoI RGCGCY 2 cut(s) 111, 215
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 17
Bpu10I CCTNAGC 1 cut(s) 262
BpuEI CTTGAG 1 cut(s) 174
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 224, 273
Bse3DI GCAATG 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 61
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 158, 276
BseNI ACTGG 2 cut(s) 224, 273
BshFI GGCC 2 cut(s) 65, 196
BsiHKAI GWGCWC 1 cut(s) 285
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 163
BsnI GGCC 2 cut(s) 65, 196
Bsp1286I GDGCHC 1 cut(s) 285
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 65, 196
BspCNI CTCAG 2 cut(s) 159, 275
BspLI GGNNCC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 84
BsrI ACTGG 2 cut(s) 224, 273
Bst4CI ACNGT 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 177
BstDEI CTNAG 3 cut(s) 167, 262, 284
BstENI CCTNNNNNAGG 1 cut(s) 59
BstH2I RGCGCY 2 cut(s) 111, 215
BstHHI GCGC 2 cut(s) 110, 214
BstMAI GTCTC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 185, 220
BstXI CCANNNNNNTGG 1 cut(s) 157
BsuRI GGCC 2 cut(s) 65, 196
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 291
CfoI GCGC 2 cut(s) 110, 214
Cfr13I GGNCC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 74
CviAII CATG 1 cut(s) 104
CviJI RGCY 7 cut(s) 65, 175, 188, 196, 223, 266, 283
CviKI_1 RGCY 7 cut(s) 65, 175, 188, 196, 223, 266, 283
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 3 cut(s) 167, 262, 284
Ecl136II GAGCTC 1 cut(s) 283
Eco147I AGGCCT 1 cut(s) 65
Eco24I GRGCYC 1 cut(s) 285
Eco32I GATATC 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 59
EcoO109I RGGNCCY 1 cut(s) 194
EcoRV GATATC 1 cut(s) 163
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 1 cut(s) 107
FaiI YATR 5 cut(s) 49, 70, 105, 158, 249
FatI CATG 1 cut(s) 103
FauI CCCGC 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 285
GlaI GCGC 2 cut(s) 109, 213
HaeII RGCGCY 2 cut(s) 111, 215
HaeIII GGCC 2 cut(s) 65, 196
HhaI GCGC 2 cut(s) 110, 214
Hin1II CATG 1 cut(s) 107
Hin6I GCGC 2 cut(s) 108, 212
HinP1I GCGC 2 cut(s) 108, 212
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 3 cut(s) 117, 166, 291
HpyCH4III ACNGT 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 47, 179
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 220
HpyF3I CTNAG 3 cut(s) 167, 262, 284
Hsp92II CATG 1 cut(s) 107
HspAI GCGC 2 cut(s) 108, 212
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 5 cut(s) 102, 179, 219, 237, 286
MboII GAAGA 2 cut(s) 137, 194
MhlI GDGCHC 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 4 cut(s) 30, 38, 207, 271
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 185, 220
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 17
PceI AGGCCT 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 1 cut(s) 194
PsrI GAACNNNNNNTAC 2 cut(s) 8, 40
PstNI CAGNNNCTG 1 cut(s) 291
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 11
Sau96I GGNCC 1 cut(s) 194
SduI GDGCHC 1 cut(s) 285
SetI ASST 6 cut(s) 30, 177, 190, 208, 263, 285
SmiMI CAYNNNNRTG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
SseBI AGGCCT 1 cut(s) 65
SsiI CCGC 1 cut(s) 89
SstI GAGCTC 1 cut(s) 285
StuI AGGCCT 1 cut(s) 65
TaaI ACNGT 1 cut(s) 154
TaqI TCGA 1 cut(s) 137
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 157
TspDTI ATGAA 1 cut(s) 123
TspRI CASTG 1 cut(s) 157
XagI CCTNNNNNAGG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.