RNA-binding protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G53800 |
| fragaria_vesca | FvH4_3g20100 |
| malus_domestica | MD03G1225800.v1.1 MD11G1245300.v1.1 MD11G1245600.v1.1 |
| prunus_persica | Prupe.4G183600_v2.0.a1 |
| pyrus_communis | pycom03g17360 pycom11g21750 |
| rosa_chinensis | RchiOBHm_Chr5g0033901 |
| rosa_laevigata | RLG00000033509 |
| rosa_multiflora | Rmu_co8447119.1_g000001 Rmu_sc0001150.1_g000015 Rmu_sc0022678.1_g000005 |
| rosa_roxburghii | Rroxscaffold_1G00046310 |
| rosa_rugosa | Rorug05G0143100 |
| rosa_samantha | Rh5AG234000 Rh5BG234600 Rh5DG241500 |
| rosa_wichuraiana | Rw5G021530 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 242 |
| AfaI | GTAC | 2 cut(s) | 139, 299 |
| AfeI | AGCGCT | 1 cut(s) | 227 |
| AgsI | TTSAA | 2 cut(s) | 7, 148 |
| AluBI | AGCT | 3 cut(s) | 35, 218, 269 |
| AluI | AGCT | 3 cut(s) | 35, 218, 269 |
| Aor51HI | AGCGCT | 1 cut(s) | 227 |
| ApeKI | GCWGC | 3 cut(s) | 320, 323, 326 |
| AspLEI | GCGC | 1 cut(s) | 228 |
| AspS9I | GGNCC | 1 cut(s) | 346 |
| AsuC2I | CCSGG | 1 cut(s) | 278 |
| AvaII | GGWCC | 1 cut(s) | 346 |
| BbvI | GCAGC | 3 cut(s) | 307, 310, 313 |
| BccI | CCATC | 1 cut(s) | 280 |
| BceAI | ACGGC | 1 cut(s) | 182 |
| BcnI | CCSGG | 1 cut(s) | 278 |
| BfoI | RGCGCY | 1 cut(s) | 229 |
| BisI | GCNGC | 3 cut(s) | 321, 324, 327 |
| BlsI | GCNGC | 3 cut(s) | 322, 325, 328 |
| Bme1390I | CCNGG | 1 cut(s) | 278 |
| Bme18I | GGWCC | 1 cut(s) | 346 |
| BmgT120I | GGNCC | 1 cut(s) | 346 |
| BmiI | GGNNCC | 1 cut(s) | 348 |
| BmrFI | CCNGG | 1 cut(s) | 278 |
| BmsI | GCATC | 3 cut(s) | 58, 168, 343 |
| BpuMI | CCSGG | 1 cut(s) | 278 |
| Bse1I | ACTGG | 2 cut(s) | 249, 295 |
| Bse3DI | GCAATG | 1 cut(s) | 261 |
| BseMI | GCAATG | 1 cut(s) | 261 |
| BseNI | ACTGG | 2 cut(s) | 249, 295 |
| BseXI | GCAGC | 3 cut(s) | 307, 310, 313 |
| BsiSI | CCGG | 1 cut(s) | 277 |
| Bsp143I | GATC | 2 cut(s) | 22, 303 |
| BspLI | GGNNCC | 1 cut(s) | 348 |
| BsrDI | GCAATG | 1 cut(s) | 261 |
| BsrI | ACTGG | 2 cut(s) | 249, 295 |
| BssMI | GATC | 2 cut(s) | 22, 303 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 142 |
| Bst6I | CTCTTC | 1 cut(s) | 276 |
| BstC8I | GCNNGC | 1 cut(s) | 267 |
| BstH2I | RGCGCY | 1 cut(s) | 229 |
| BstHHI | GCGC | 1 cut(s) | 228 |
| BstKTI | GATC | 2 cut(s) | 25, 306 |
| BstMBI | GATC | 2 cut(s) | 22, 303 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 232, 326 |
| BstSCI | CCNGG | 1 cut(s) | 276 |
| BstV1I | GCAGC | 3 cut(s) | 307, 310, 313 |
| Cac8I | GCNNGC | 1 cut(s) | 267 |
| CfoI | GCGC | 1 cut(s) | 228 |
| Cfr13I | GGNCC | 1 cut(s) | 346 |
| Csp6I | GTAC | 2 cut(s) | 138, 298 |
| CviAII | CATG | 1 cut(s) | 16 |
| CviJI | RGCY | 6 cut(s) | 35, 63, 218, 269, 290, 320 |
| CviKI_1 | RGCY | 6 cut(s) | 35, 63, 218, 269, 290, 320 |
| CviQI | GTAC | 2 cut(s) | 138, 298 |
| DpnI | GATC | 2 cut(s) | 24, 305 |
| DpnII | GATC | 2 cut(s) | 22, 303 |
| Eam1104I | CTCTTC | 1 cut(s) | 276 |
| EarI | CTCTTC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 1 cut(s) | 346 |
| Eco47III | AGCGCT | 1 cut(s) | 227 |
| Eco57I | CTGAAG | 1 cut(s) | 242 |
| FaeI | CATG | 1 cut(s) | 19 |
| FaiI | YATR | 4 cut(s) | 17, 60, 84, 233 |
| FatI | CATG | 1 cut(s) | 15 |
| Fnu4HI | GCNGC | 3 cut(s) | 321, 324, 327 |
| Fsp4HI | GCNGC | 3 cut(s) | 321, 324, 327 |
| GlaI | GCGC | 1 cut(s) | 227 |
| GluI | GCNGC | 3 cut(s) | 321, 324, 327 |
| HaeII | RGCGCY | 1 cut(s) | 229 |
| HapII | CCGG | 1 cut(s) | 277 |
| HhaI | GCGC | 1 cut(s) | 228 |
| Hin1II | CATG | 1 cut(s) | 19 |
| Hin6I | GCGC | 1 cut(s) | 226 |
| HinP1I | GCGC | 1 cut(s) | 226 |
| HinfI | GANTC | 1 cut(s) | 183 |
| HpaII | CCGG | 1 cut(s) | 277 |
| Hpy166II | GTNNAC | 1 cut(s) | 242 |
| Hpy188I | TCNGA | 2 cut(s) | 222, 308 |
| Hpy188III | TCNNGA | 1 cut(s) | 334 |
| Hpy8I | GTNNAC | 1 cut(s) | 242 |
| Hpy99I | CGWCG | 1 cut(s) | 168 |
| HpyAV | CCTTC | 2 cut(s) | 54, 333 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 142 |
| HpyCH4V | TGCA | 3 cut(s) | 235, 329, 356 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 232, 326 |
| Hsp92II | CATG | 1 cut(s) | 19 |
| HspAI | GCGC | 1 cut(s) | 226 |
| Kzo9I | GATC | 2 cut(s) | 22, 303 |
| LpnPI | CCDG | 5 cut(s) | 64, 230, 290, 308, 347 |
| Lsp1109I | GCAGC | 3 cut(s) | 307, 310, 313 |
| LweI | GCATC | 3 cut(s) | 58, 168, 343 |
| MalI | GATC | 2 cut(s) | 24, 305 |
| MboI | GATC | 2 cut(s) | 22, 303 |
| MboII | GAAGA | 4 cut(s) | 32, 215, 218, 293 |
| MlyI | GAGTC | 1 cut(s) | 192 |
| MmeI | TCCRAC | 1 cut(s) | 324 |
| MnlI | CCTC | 2 cut(s) | 148, 310 |
| MseI | TTAA | 1 cut(s) | 114 |
| MspI | CCGG | 1 cut(s) | 277 |
| MspR9I | CCNGG | 1 cut(s) | 278 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 232, 326 |
| NciI | CCSGG | 1 cut(s) | 278 |
| NdeII | GATC | 2 cut(s) | 22, 303 |
| NlaIII | CATG | 1 cut(s) | 19 |
| NlaIV | GGNNCC | 1 cut(s) | 348 |
| PfoI | TCCNGGA | 1 cut(s) | 276 |
| PkrI | GCNGC | 3 cut(s) | 322, 325, 328 |
| PleI | GAGTC | 1 cut(s) | 191 |
| PpsI | GAGTC | 1 cut(s) | 191 |
| PspN4I | GGNNCC | 1 cut(s) | 348 |
| PspPI | GGNCC | 1 cut(s) | 346 |
| RsaI | GTAC | 2 cut(s) | 139, 299 |
| RsaNI | GTAC | 2 cut(s) | 138, 298 |
| SaqAI | TTAA | 1 cut(s) | 114 |
| SatI | GCNGC | 3 cut(s) | 321, 324, 327 |
| Sau3AI | GATC | 2 cut(s) | 22, 303 |
| Sau96I | GGNCC | 1 cut(s) | 346 |
| SchI | GAGTC | 1 cut(s) | 192 |
| ScrFI | CCNGG | 1 cut(s) | 278 |
| SetI | ASST | 6 cut(s) | 37, 112, 123, 220, 271, 344 |
| SfaNI | GCATC | 3 cut(s) | 58, 168, 343 |
| SinI | GGWCC | 1 cut(s) | 346 |
| StyD4I | CCNGG | 1 cut(s) | 276 |
| TaaI | ACNGT | 2 cut(s) | 12, 142 |
| TatI | WGTACW | 1 cut(s) | 297 |
| Tru1I | TTAA | 1 cut(s) | 114 |
| Tru9I | TTAA | 1 cut(s) | 114 |
| TseI | GCWGC | 3 cut(s) | 320, 323, 326 |
| TspDTI | ATGAA | 3 cut(s) | 4, 116, 272 |
| TspGWI | ACGGA | 1 cut(s) | 176 |
| VpaK11BI | GGWCC | 1 cut(s) | 346 |