Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012312

Physical Location & Seq

Genomic Coordinates Reverse (-)

13976162 .. 13981397

Gene Structure 5236 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g20940.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAGTTTGGCTATCAACCATTGCGGCAGTTACAGCATCAATTCTTTCACTACTTCAAGCTGCAAGCATGGCTGGAAAACTAGTCATGGTAGATATATGGTGCCCGTCGGAGCGCTGAAGAGACATTCAACACCTCAGGATGTTGGCCAAGATTTGGCACCATTGGCAAAGATTAATGATGGAAGCAGGAGCTTTCAAATCAAGACAGTTGTGAATGCCATAGCAGTGGGAAATTTGGTCTTCACAGACATGGCAAAGGCTGTAACTACGGGGAATATCCTAGAAGGTGCTGTATCAATTTATGACATTGCTGAAGGAGGAGCTGGAGATTGGTTTGGAGGCTTCCTTTTTACCACTGGACAACAAGCTAATGAAGCTGTTCAAGACCAGTTATCAGCTCTCAGTTTCTCCAGTTTGGCAGTTATTTTTGGTGCCGGGCTTGTGACTAGCCTTTCTCCTTGTACTCTCAGTGTTCTACCTCTGACCCTTGGTTACATAGGAGCATTTGGTTCAGGGAAAAGCAGGGCACAGGTTATTGGGGATTCAATTGCCTTCTCATTGGGATTGGCAACTACACTTGCACTCTTAGGCATTGCAGCCTCATTTGCTGGGAAGGCATATGGACAGACAGGGCAGGGATTACCTGTGGCCGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTTCTTGAGATAATTGAACTACAGCTGCCGTCCTTTTTTGACAACTTTGATCCCCGGGCTGCTGCTGCTAATTTTCCATCAAGTGTGCAAGCATATCTAGCTGGACTTACATTTGCTTTAGCTGCCTCTCCATGCAGTACACCAGTGCTGGCCACTCTGCTAGGATATGTAGCTACATCCAAGGATCCATTTATAGGAGGCAGCCTATTGTTGACGTACACAACTGGTTATGTTGCTCCTCTACTTCTTGCTGCTTCTTTTGCTGGAGCATTGCAGAGGCTGCTTTCGTTTCGCAAATTTTCAGCATGGATCAACCCAATCAGTGGTGCACTTCTATTGGGAGGGGGAGTGTATACTTTCTTGGATCGGCTTTTCCCAGCTACTACAATGGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

361

Amino Acids

37.16

Weight (kDa)

7.66

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DsbD_TM	PF02683	138 - 319	2e-23	Cytochrome C biogenesis protein transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54290 AT5G54290
fragaria_vesca	FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica	MD11G1237300.v1.1
prunus_persica	Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis	pycom11g20860
rosa_chinensis	RchiOBHm_Chr5g0035361
rosa_laevigata	RLG00000033620
rosa_multiflora	Rmu_co8507677.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045040
rosa_rugosa	Rorug05G0151400
rosa_samantha	Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana	Rw5G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	100, 157, 431
AccB7I	CCANNNNNTGG	2 cut(s)	154, 1007
AccI	GTMKAC	1 cut(s)	1037
AciI	CCGC	2 cut(s)	24, 651
AclWI	GGATC	5 cut(s)	728, 863, 876, 1001, 1056
AcoI	YGGCCR	3 cut(s)	145, 648, 834
AcsI	RAATTY	2 cut(s)	232, 980
AcuI	CTGAAG	3 cut(s)	137, 333, 639
AfaI	GTAC	3 cut(s)	463, 823, 902
AfeI	AGCGCT	1 cut(s)	114
AfiI	CCNNNNNNNGG	3 cut(s)	154, 878, 1007
AgsI	TTSAA	7 cut(s)	57, 129, 197, 383, 546, 682, 701
AhlI	ACTAGT	1 cut(s)	80
Alw21I	GWGCWC	1 cut(s)	1015
Alw26I	GTCTC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	1011
AlwI	GGATC	5 cut(s)	728, 863, 876, 1001, 1056
AlwNI	CAGNNNCTG	1 cut(s)	964
Ama87I	CYCGRG	1 cut(s)	738
Aor51HI	AGCGCT	1 cut(s)	114
AoxI	GGCC	3 cut(s)	145, 648, 834
ApaLI	GTGCAC	1 cut(s)	1011
ApoI	RAATTY	2 cut(s)	232, 980
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	378
AspLEI	GCGC	1 cut(s)	115
AsuC2I	CCSGG	3 cut(s)	436, 739, 740
AvaI	CYCGRG	1 cut(s)	738
AxyI	CCTNAGG	1 cut(s)	135
BaeGI	GKGCMC	3 cut(s)	105, 529, 1015
BalI	TGGCCA	2 cut(s)	147, 836
BamHI	GGATCC	1 cut(s)	868
BanI	GGYRCC	3 cut(s)	100, 157, 431
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	1015
BccI	CCATC	2 cut(s)	173, 769
BceAI	ACGGC	1 cut(s)	697
BcnI	CCSGG	3 cut(s)	436, 739, 740
BcoDI	GTCTC	1 cut(s)	115
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	5 cut(s)	81, 281, 447, 782, 845
BfmI	CTRYAG	1 cut(s)	704
BfoI	RGCGCY	1 cut(s)	116
Bme1390I	CCNGG	3 cut(s)	436, 739, 740
BmeT110I	CYCGRG	1 cut(s)	738
BmiI	GGNNCC	4 cut(s)	102, 159, 433, 870
BmrFI	CCNGG	3 cut(s)	436, 739, 740
BmsI	GCATC	1 cut(s)	45
BpiI	GAAGAC	1 cut(s)	232
BpmI	CTGGAG	3 cut(s)	345, 394, 969
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	3 cut(s)	436, 739, 740
BsaJI	CCNNGG	4 cut(s)	487, 737, 738, 864
BsaXI	ACNNNNNCTCC	2 cut(s)	1017, 1047
Bsc4I	CCNNNNNNNGG	3 cut(s)	154, 878, 1007
Bse1I	ACTGG	5 cut(s)	361, 388, 411, 827, 913
Bse21I	CCTNAGG	1 cut(s)	135
Bse3DI	GCAATG	5 cut(s)	19, 306, 591, 953, 1083
BseDI	CCNNGG	4 cut(s)	487, 737, 738, 864
BseGI	GGATG	2 cut(s)	145, 860
BseLI	CCNNNNNNNGG	3 cut(s)	154, 878, 1007
BseMI	GCAATG	5 cut(s)	19, 306, 591, 953, 1083
BseMII	CTCAG	3 cut(s)	149, 415, 481
BseNI	ACTGG	5 cut(s)	361, 388, 411, 827, 913
BseRI	GAGGAG	2 cut(s)	333, 912
BseSI	GKGCMC	3 cut(s)	105, 529, 1015
BseYI	CCCAGC	2 cut(s)	608, 1060
BshFI	GGCC	3 cut(s)	147, 650, 836
BshNI	GGYRCC	3 cut(s)	100, 157, 431
BsiHKAI	GWGCWC	1 cut(s)	1015
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	2 cut(s)	435, 739
BslI	CCNNNNNNNGG	3 cut(s)	154, 878, 1007
BsmAI	GTCTC	1 cut(s)	115
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	3 cut(s)	147, 650, 836
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	3 cut(s)	105, 529, 1015
Bsp143I	GATC	4 cut(s)	733, 868, 993, 1048
BspACI	CCGC	2 cut(s)	24, 651
BspANI	GGCC	3 cut(s)	147, 650, 836
BspCNI	CTCAG	3 cut(s)	148, 414, 480
BspLI	GGNNCC	4 cut(s)	102, 159, 433, 870
BspPI	GGATC	5 cut(s)	728, 863, 876, 1001, 1056
BspT107I	GGYRCC	3 cut(s)	100, 157, 431
BsrDI	GCAATG	5 cut(s)	19, 306, 591, 953, 1083
BsrI	ACTGG	5 cut(s)	361, 388, 411, 827, 913
BssECI	CCNNGG	4 cut(s)	487, 737, 738, 864
BssMI	GATC	4 cut(s)	733, 868, 993, 1048
BssNAI	GTATAC	1 cut(s)	1038
BssT1I	CCWWGG	2 cut(s)	487, 864
Bst1107I	GTATAC	1 cut(s)	1038
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	964
BstC8I	GCNNGC	3 cut(s)	65, 774, 834
BstDEI	CTNAG	4 cut(s)	135, 401, 467, 586
BstF5I	GGATG	2 cut(s)	145, 860
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	4 cut(s)	736, 871, 996, 1051
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	4 cut(s)	733, 868, 993, 1048
BstSCI	CCNGG	3 cut(s)	434, 737, 738
BstSFI	CTRYAG	1 cut(s)	704
BstSLI	GKGCMC	3 cut(s)	105, 529, 1015
BstV2I	GAAGAC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	868
BstXI	CCANNNNNNTGG	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	868
BstZ17I	GTATAC	1 cut(s)	1038
Bsu36I	CCTNAGG	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	147, 650, 836
BtsCI	GGATG	2 cut(s)	145, 860
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	5 cut(s)	231, 354, 475, 834, 1012
Cac8I	GCNNGC	3 cut(s)	65, 774, 834
CaiI	CAGNNNCTG	1 cut(s)	964
CfoI	GCGC	1 cut(s)	115
Cfr9I	CCCGGG	1 cut(s)	738
Csp6I	GTAC	3 cut(s)	462, 822, 901
CviAII	CATG	5 cut(s)	68, 86, 250, 816, 990
CviQI	GTAC	3 cut(s)	462, 822, 901
DdeI	CTNAG	4 cut(s)	135, 401, 467, 586
DpnI	GATC	4 cut(s)	735, 870, 995, 1050
DpnII	GATC	4 cut(s)	733, 868, 993, 1048
EaeI	YGGCCR	3 cut(s)	145, 648, 834
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	487, 864
Eco47III	AGCGCT	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	137, 333, 639
Eco81I	CCTNAGG	1 cut(s)	135
Eco88I	CYCGRG	1 cut(s)	738
EcoT14I	CCWWGG	2 cut(s)	487, 864
ErhI	CCWWGG	2 cut(s)	487, 864
FaeI	CATG	5 cut(s)	71, 89, 253, 819, 993
FatI	CATG	5 cut(s)	67, 85, 249, 815, 989
FauNDI	CATATG	1 cut(s)	619
FblI	GTMKAC	1 cut(s)	1037
FokI	GGATG	2 cut(s)	152, 847
FspBI	CTAG	5 cut(s)	81, 281, 447, 782, 845
GlaI	GCGC	1 cut(s)	114
GsaI	CCCAGC	2 cut(s)	612, 1064
GsuI	CTGGAG	3 cut(s)	345, 394, 969
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	147, 650, 836
HapII	CCGG	2 cut(s)	435, 739
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	5 cut(s)	71, 89, 253, 819, 993
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	897
HindII	GTYRAC	1 cut(s)	897
HinfI	GANTC	2 cut(s)	542, 682
HpaII	CCGG	2 cut(s)	435, 739
Hpy166II	GTNNAC	5 cut(s)	824, 897, 903, 1013, 1038
Hpy188I	TCNGA	2 cut(s)	110, 483
Hpy188III	TCNNGA	4 cut(s)	137, 202, 383, 689
Hpy8I	GTNNAC	5 cut(s)	824, 897, 903, 1013, 1038
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	4 cut(s)	278, 308, 562, 607
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	899
HpyCH4V	TGCA	7 cut(s)	63, 581, 596, 772, 819, 958, 1013
HpyF3I	CTNAG	4 cut(s)	135, 401, 467, 586
HpySE526I	ACGT	1 cut(s)	899
Hsp92II	CATG	5 cut(s)	71, 89, 253, 819, 993
HspAI	GCGC	1 cut(s)	113
Kzo9I	GATC	4 cut(s)	733, 868, 993, 1048
LmnI	GCTCC	6 cut(s)	110, 189, 320, 500, 925, 950
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	5 cut(s)	81, 281, 447, 782, 845
MaeII	ACGT	1 cut(s)	899
MaeIII	GTNAC	4 cut(s)	29, 262, 442, 491
MalI	GATC	4 cut(s)	735, 870, 995, 1050
MboI	GATC	4 cut(s)	733, 868, 993, 1048
MboII	GAAGA	3 cut(s)	130, 232, 677
MfeI	CAATTG	1 cut(s)	546
MflI	RGATCY	1 cut(s)	868
MhlI	GDGCHC	3 cut(s)	105, 529, 1015
MlsI	TGGCCA	2 cut(s)	147, 836
MluCI	AATT	7 cut(s)	40, 232, 297, 546, 696, 754, 980
MluNI	TGGCCA	2 cut(s)	147, 836
MmeI	TCCRAC	1 cut(s)	88
Mox20I	TGGCCA	2 cut(s)	147, 836
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	2 cut(s)	147, 836
MseI	TTAA	1 cut(s)	174
MslI	CAYNNNNRTG	2 cut(s)	224, 248
Msp20I	TGGCCA	2 cut(s)	147, 836
MspA1I	CMGCKG	1 cut(s)	709
MspI	CCGG	2 cut(s)	435, 739
MspR9I	CCNGG	3 cut(s)	436, 739, 740
MunI	CAATTG	1 cut(s)	546
Mva1269I	GAATGC	1 cut(s)	220
NciI	CCSGG	3 cut(s)	436, 739, 740
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	4 cut(s)	733, 868, 993, 1048
NlaIII	CATG	5 cut(s)	71, 89, 253, 819, 993
NlaIV	GGNNCC	4 cut(s)	102, 159, 433, 870
NmuCI	GTSAC	1 cut(s)	442
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	542, 682
PflMI	CCANNNNNTGG	2 cut(s)	154, 1007
PshBI	ATTAAT	1 cut(s)	174
PspFI	CCCAGC	2 cut(s)	608, 1060
PspN4I	GGNNCC	4 cut(s)	102, 159, 433, 870
PstNI	CAGNNNCTG	1 cut(s)	964
PsuI	RGATCY	1 cut(s)	868
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	3 cut(s)	463, 823, 902
RsaNI	GTAC	3 cut(s)	462, 822, 901
RseI	CAYNNNNRTG	2 cut(s)	224, 248
SaqAI	TTAA	1 cut(s)	174
Sau3AI	GATC	4 cut(s)	733, 868, 993, 1048
ScrFI	CCNGG	3 cut(s)	436, 739, 740
SduI	GDGCHC	3 cut(s)	105, 529, 1015
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	1 cut(s)	704
SmaI	CCCGGG	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	224, 248
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SpeI	ACTAGT	1 cut(s)	80
Sse9I	AATT	7 cut(s)	40, 232, 297, 546, 696, 754, 980
SsiI	CCGC	2 cut(s)	24, 651
SspMI	CTAG	5 cut(s)	81, 281, 447, 782, 845
StyD4I	CCNGG	3 cut(s)	434, 737, 738
StyI	CCWWGG	2 cut(s)	487, 864
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	902
TasI	AATT	7 cut(s)	40, 232, 297, 546, 696, 754, 980
TatI	WGTACW	2 cut(s)	461, 821
TauI	GCSGC	2 cut(s)	27, 653
TfiI	GAWTC	2 cut(s)	542, 682
Tru1I	TTAA	1 cut(s)	174
Tru9I	TTAA	1 cut(s)	174
TscAI	CASTG	5 cut(s)	231, 361, 475, 834, 1012
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	1 cut(s)	387
TspMI	CCCGGG	1 cut(s)	738
TspRI	CASTG	5 cut(s)	231, 361, 475, 834, 1012
Van91I	CCANNNNNTGG	2 cut(s)	154, 1007
VneI	GTGCAC	1 cut(s)	1011
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	2 cut(s)	232, 980
XmaI	CCCGGG	1 cut(s)	738
XmiI	GTMKAC	1 cut(s)	1037
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	5 cut(s)	81, 281, 447, 782, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.