Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012312

Physical Location & Seq

Genomic Coordinates Reverse (-)

11294659 .. 11299414

Gene Structure 4756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G189900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAATTTGGCTATCAACCATTGCGGCAGCTACGGAATTAATTCTTTCACAATTTCAAGCTGCAAGGGTGGCCAGAAAAGTAGTCACGGTAAATATATGGTACCCATCAGAATGCTAAGGGGACCTTCTACTTCTATACCTCAGGATCTTAGCCAAGATTTGGCATCATTGGCCAAGAGTGATACAAGCAGCAGCTTCCCATTTAAGACAGCTGTAAATTCCATGGCAGTGGCAAATTTGGTCTTCGCAGACATGGCAAAGGCTGTAACCACAGGAAATTTTTTGGAAGGTGCTGTTTCAGTTTATACCTTGGCTGATGGTGGCCCTGGAGAATGGTTTGGAGGTTTCCTATTTTCTGCTGGACAAGAGGCTAATGAGGCTGTTCAAGACCAGTTATCTGCCCTCAGTTTCTCTAGTTTGGCAGTTATTTTTGGGGCTGGGCTTGTGACCAGCCTTTCTCCTTGTACTCTTAGCGTTCTGCCACTGACACTAGGTTACATAGGAGCATTTGGATCAGGGAAAAGCAAGGCAGAGGTTGTTGGGAATTCAATTGCATTCTCATTAGGATTGGCAACTACACTTGCACTCTTAGGCATAGGAGCCTCATTTGCTGGAAAAGCATATGGACAGACAGGGCAGGGGTTACCTTTGGCTGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTCCTTGAGGTAATTGAACTACAGCTCCCCTCATTTTTTAACAATTTTGATCCCCGGGCTGCTGCTGCTAATTTCCCATCAAGTGTGCAAGCATATCTAGCCGGGCTTACATTTGCTTTAGCTGCCTCACCATGCAGTACGCCAGTGTTGGCCACTCTGCTAGGATATGTAGCTACATCGAAGAATCCAGTTATAGGAGGCAGCTTACTTTTGACGTACACAACTGGTTATGTTGCTCCTCTACTTCTTGCTGCTTCTTTTGCTGGAGCATTGCAGAGCCTACTTTCATTTCGCAAATTTTCGGCATGGATCAACCCTATCAGCGGTGCACTTCTGTTAGGAGGGGGTGTGTATACTTTCTTGGATAGGCTTTTCCCAGTTACAATGGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

361

Amino Acids

36.86

Weight (kDa)

7.62

Isoelectric Point (pI)

26.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54290 AT5G54290
fragaria_vesca	FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica	MD11G1237300.v1.1
prunus_persica	Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis	pycom11g20860
rosa_chinensis	RchiOBHm_Chr5g0035361
rosa_laevigata	RLG00000033620
rosa_multiflora	Rmu_co8507677.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045040
rosa_rugosa	Rorug05G0151400
rosa_samantha	Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana	Rw5G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	100
AccB1I	GGYRCC	1 cut(s)	100
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	1 cut(s)	1040
AciI	CCGC	2 cut(s)	24, 1011
AclWI	GGATC	4 cut(s)	153, 520, 731, 1004
AcoI	YGGCCR	3 cut(s)	70, 171, 837
AcsI	RAATTY	6 cut(s)	4, 217, 235, 277, 544, 983
AcuI	CTGAAG	1 cut(s)	642
AfaI	GTAC	4 cut(s)	102, 466, 826, 905
AfiI	CCNNNNNNNGG	3 cut(s)	160, 881, 1010
AgsI	TTSAA	5 cut(s)	57, 386, 549, 685, 704
AjnI	CCWGG	1 cut(s)	325
AloI	GAACNNNNNNTCC	2 cut(s)	696, 728
AluBI	AGCT	9 cut(s)	30, 60, 195, 212, 668, 712, 809, 860, 891
AluI	AGCT	9 cut(s)	30, 60, 195, 212, 668, 712, 809, 860, 891
Alw21I	GWGCWC	1 cut(s)	1018
Alw44I	GTGCAC	1 cut(s)	1014
AlwI	GGATC	4 cut(s)	153, 520, 731, 1004
Ama87I	CYCGRG	1 cut(s)	741
AoxI	GGCC	4 cut(s)	70, 171, 322, 837
ApaLI	GTGCAC	1 cut(s)	1014
ApoI	RAATTY	6 cut(s)	4, 217, 235, 277, 544, 983
AseI	ATTAAT	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	40
Asp718I	GGTACC	1 cut(s)	100
AspS9I	GGNCC	2 cut(s)	122, 323
AsuC2I	CCSGG	3 cut(s)	742, 743, 790
AsuHPI	GGTGA	1 cut(s)	807
AvaI	CYCGRG	1 cut(s)	741
AvaII	GGWCC	1 cut(s)	122
AxyI	CCTNAGG	1 cut(s)	141
BaeGI	GKGCMC	1 cut(s)	1018
BalI	TGGCCA	3 cut(s)	72, 173, 839
BanI	GGYRCC	1 cut(s)	100
BbsI	GAAGAC	1 cut(s)	235
Bbv12I	GWGCWC	1 cut(s)	1018
BccI	CCATC	3 cut(s)	113, 311, 772
BciT130I	CCWGG	1 cut(s)	327
BcnI	CCSGG	3 cut(s)	742, 743, 790
BfaI	CTAG	4 cut(s)	414, 491, 785, 848
BfmI	CTRYAG	1 cut(s)	707
Bme1390I	CCNGG	4 cut(s)	327, 742, 743, 790
Bme18I	GGWCC	1 cut(s)	122
BmeT110I	CYCGRG	1 cut(s)	741
BmgT120I	GGNCC	2 cut(s)	122, 323
BmiI	GGNNCC	3 cut(s)	102, 123, 601
BmrFI	CCNGG	4 cut(s)	327, 742, 743, 790
BmrI	ACTGGG	1 cut(s)	1058
BmsI	GCATC	1 cut(s)	173
BmuI	ACTGGG	1 cut(s)	1058
BpiI	GAAGAC	1 cut(s)	235
BpmI	CTGGAG	2 cut(s)	348, 972
Bpu10I	CCTNAGC	1 cut(s)	116
BpuEI	CTTGAG	1 cut(s)	713
BpuMI	CCSGG	3 cut(s)	742, 743, 790
BsaJI	CCNNGG	5 cut(s)	222, 309, 325, 740, 741
BsaXI	ACNNNNNCTCC	4 cut(s)	696, 726, 1020, 1050
Bsc4I	CCNNNNNNNGG	3 cut(s)	160, 881, 1010
Bse1I	ACTGG	5 cut(s)	391, 830, 875, 916, 1064
Bse21I	CCTNAGG	1 cut(s)	141
Bse3DI	GCAATG	3 cut(s)	19, 956, 1083
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	5 cut(s)	222, 309, 325, 740, 741
BseLI	CCNNNNNNNGG	3 cut(s)	160, 881, 1010
BseMI	GCAATG	3 cut(s)	19, 956, 1083
BseMII	CTCAG	2 cut(s)	155, 418
BseNI	ACTGG	5 cut(s)	391, 830, 875, 916, 1064
BseRI	GAGGAG	1 cut(s)	915
BseSI	GKGCMC	1 cut(s)	1018
BseYI	CCCAGC	1 cut(s)	437
BshFI	GGCC	4 cut(s)	72, 173, 324, 839
BshNI	GGYRCC	1 cut(s)	100
BsiHKAI	GWGCWC	1 cut(s)	1018
BsiHKCI	CYCGRG	1 cut(s)	741
BsiSI	CCGG	2 cut(s)	742, 789
BslFI	GGGAC	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	160, 881, 1010
BsmFI	GGGAC	1 cut(s)	135
BsmI	GAATGC	2 cut(s)	117, 554
BsnI	GGCC	4 cut(s)	72, 173, 324, 839
BsoBI	CYCGRG	1 cut(s)	741
Bsp1286I	GDGCHC	1 cut(s)	1018
Bsp143I	GATC	4 cut(s)	145, 512, 736, 996
Bsp19I	CCATGG	1 cut(s)	222
BspACI	CCGC	2 cut(s)	24, 1011
BspANI	GGCC	4 cut(s)	72, 173, 324, 839
BspCNI	CTCAG	2 cut(s)	154, 417
BspLI	GGNNCC	3 cut(s)	102, 123, 601
BspPI	GGATC	4 cut(s)	153, 520, 731, 1004
BspT107I	GGYRCC	1 cut(s)	100
BsrDI	GCAATG	3 cut(s)	19, 956, 1083
BsrI	ACTGG	5 cut(s)	391, 830, 875, 916, 1064
BssECI	CCNNGG	5 cut(s)	222, 309, 325, 740, 741
BssMI	GATC	4 cut(s)	145, 512, 736, 996
BssNAI	GTATAC	1 cut(s)	1041
BssT1I	CCWWGG	2 cut(s)	222, 309
Bst1107I	GTATAC	1 cut(s)	1041
Bst2UI	CCWGG	1 cut(s)	327
Bst4CI	ACNGT	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	777
BstDEI	CTNAG	6 cut(s)	116, 141, 149, 404, 470, 589
BstDSI	CCRYGG	1 cut(s)	222
BstEII	GGTNACC	1 cut(s)	642
BstKTI	GATC	4 cut(s)	148, 515, 739, 999
BstMBI	GATC	4 cut(s)	145, 512, 736, 996
BstNI	CCWGG	1 cut(s)	327
BstPI	GGTNACC	1 cut(s)	642
BstSCI	CCNGG	4 cut(s)	325, 740, 741, 788
BstSFI	CTRYAG	1 cut(s)	707
BstSLI	GKGCMC	1 cut(s)	1018
BstV2I	GAAGAC	1 cut(s)	235
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	229
BstYI	RGATCY	1 cut(s)	145
BstZ17I	GTATAC	1 cut(s)	1041
Bsu36I	CCTNAGG	1 cut(s)	141
BsuRI	GGCC	4 cut(s)	72, 173, 324, 839
BtgI	CCRYGG	1 cut(s)	222
BtsI	GCAGTG	1 cut(s)	234
BtsIMutI	CAGTG	3 cut(s)	234, 482, 837
Cac8I	GCNNGC	1 cut(s)	777
Cfr13I	GGNCC	2 cut(s)	122, 323
Cfr9I	CCCGGG	1 cut(s)	741
Csp6I	GTAC	4 cut(s)	101, 465, 825, 904
CviAII	CATG	4 cut(s)	223, 253, 819, 993
CviQI	GTAC	4 cut(s)	101, 465, 825, 904
DdeI	CTNAG	6 cut(s)	116, 141, 149, 404, 470, 589
DpnI	GATC	4 cut(s)	147, 514, 738, 998
DpnII	GATC	4 cut(s)	145, 512, 736, 996
EaeI	YGGCCR	3 cut(s)	70, 171, 837
Eco130I	CCWWGG	2 cut(s)	222, 309
Eco47I	GGWCC	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	642
Eco81I	CCTNAGG	1 cut(s)	141
Eco88I	CYCGRG	1 cut(s)	741
Eco91I	GGTNACC	1 cut(s)	642
EcoO109I	RGGNCCY	1 cut(s)	122
EcoO65I	GGTNACC	1 cut(s)	642
EcoRI	GAATTC	1 cut(s)	544
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	2 cut(s)	222, 309
ErhI	CCWWGG	2 cut(s)	222, 309
FaeI	CATG	4 cut(s)	226, 256, 822, 996
FalI	AAGNNNNNCTT	2 cut(s)	109, 141
FaqI	GGGAC	1 cut(s)	135
FatI	CATG	4 cut(s)	222, 252, 818, 992
FauNDI	CATATG	1 cut(s)	622
FblI	GTMKAC	1 cut(s)	1040
FspBI	CTAG	4 cut(s)	414, 491, 785, 848
GsaI	CCCAGC	1 cut(s)	441
GsuI	CTGGAG	2 cut(s)	348, 972
HaeIII	GGCC	4 cut(s)	72, 173, 324, 839
HapII	CCGG	2 cut(s)	742, 789
Hin1II	CATG	4 cut(s)	226, 256, 822, 996
HinfI	GANTC	2 cut(s)	685, 871
HpaII	CCGG	2 cut(s)	742, 789
HphI	GGTGA	1 cut(s)	807
Hpy166II	GTNNAC	3 cut(s)	906, 1016, 1041
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	2 cut(s)	143, 386
Hpy8I	GTNNAC	3 cut(s)	906, 1016, 1041
HpyAV	CCTTC	2 cut(s)	135, 281
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	1 cut(s)	902
HpyCH4V	TGCA	7 cut(s)	63, 554, 584, 775, 822, 961, 1016
HpyF3I	CTNAG	6 cut(s)	116, 141, 149, 404, 470, 589
HpySE526I	ACGT	1 cut(s)	902
Hsp92II	CATG	4 cut(s)	226, 256, 822, 996
KpnI	GGTACC	1 cut(s)	104
Kzo9I	GATC	4 cut(s)	145, 512, 736, 996
LmnI	GCTCC	5 cut(s)	503, 599, 717, 928, 953
LweI	GCATC	1 cut(s)	173
MaeI	CTAG	4 cut(s)	414, 491, 785, 848
MaeII	ACGT	1 cut(s)	902
MaeIII	GTNAC	6 cut(s)	83, 265, 445, 494, 642, 1066
MalI	GATC	4 cut(s)	147, 514, 738, 998
MboI	GATC	4 cut(s)	145, 512, 736, 996
MboII	GAAGA	2 cut(s)	235, 880
MfeI	CAATTG	1 cut(s)	549
MflI	RGATCY	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	1018
MlsI	TGGCCA	3 cut(s)	72, 173, 839
MluNI	TGGCCA	3 cut(s)	72, 173, 839
Mox20I	TGGCCA	3 cut(s)	72, 173, 839
MroXI	GAANNNNTTC	1 cut(s)	40
MscI	TGGCCA	3 cut(s)	72, 173, 839
MseI	TTAA	3 cut(s)	39, 204, 726
MslI	CAYNNNNRTG	2 cut(s)	110, 227
Msp20I	TGGCCA	3 cut(s)	72, 173, 839
MspA1I	CMGCKG	2 cut(s)	212, 1011
MspI	CCGG	2 cut(s)	742, 789
MspR9I	CCNGG	4 cut(s)	327, 742, 743, 790
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	2 cut(s)	117, 554
MvaI	CCWGG	1 cut(s)	327
NciI	CCSGG	3 cut(s)	742, 743, 790
NcoI	CCATGG	1 cut(s)	222
NdeI	CATATG	1 cut(s)	622
NdeII	GATC	4 cut(s)	145, 512, 736, 996
NlaIII	CATG	4 cut(s)	226, 256, 822, 996
NlaIV	GGNNCC	3 cut(s)	102, 123, 601
NmuCI	GTSAC	2 cut(s)	83, 445
PctI	GAATGC	2 cut(s)	117, 554
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	2 cut(s)	685, 871
PflMI	CCANNNNNTGG	1 cut(s)	160
PpuMI	RGGWCCY	1 cut(s)	122
PshBI	ATTAAT	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	325
PspEI	GGTNACC	1 cut(s)	642
PspFI	CCCAGC	1 cut(s)	437
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	3 cut(s)	102, 123, 601
PspPI	GGNCC	2 cut(s)	122, 323
PspPPI	RGGWCCY	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	145
PvuII	CAGCTG	1 cut(s)	212
RsaI	GTAC	4 cut(s)	102, 466, 826, 905
RsaNI	GTAC	4 cut(s)	101, 465, 825, 904
RseI	CAYNNNNRTG	2 cut(s)	110, 227
SaqAI	TTAA	3 cut(s)	39, 204, 726
Sau3AI	GATC	4 cut(s)	145, 512, 736, 996
Sau96I	GGNCC	2 cut(s)	122, 323
ScrFI	CCNGG	4 cut(s)	327, 742, 743, 790
SduI	GDGCHC	1 cut(s)	1018
SfaNI	GCATC	1 cut(s)	173
SfcI	CTRYAG	1 cut(s)	707
SinI	GGWCC	1 cut(s)	122
SmaI	CCCGGG	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	110, 227
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SsiI	CCGC	2 cut(s)	24, 1011
SspMI	CTAG	4 cut(s)	414, 491, 785, 848
StyD4I	CCNGG	4 cut(s)	325, 740, 741, 788
StyI	CCWWGG	2 cut(s)	222, 309
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	1 cut(s)	905
TaqI	TCGA	1 cut(s)	866
TatI	WGTACW	1 cut(s)	464
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	685, 871
Tru1I	TTAA	3 cut(s)	39, 204, 726
Tru9I	TTAA	3 cut(s)	39, 204, 726
TscAI	CASTG	3 cut(s)	234, 489, 837
TseFI	GTSAC	2 cut(s)	83, 445
Tsp45I	GTSAC	2 cut(s)	83, 445
TspDTI	ATGAA	2 cut(s)	17, 963
TspGWI	ACGGA	1 cut(s)	48
TspMI	CCCGGG	1 cut(s)	741
TspRI	CASTG	3 cut(s)	234, 489, 837
Van91I	CCANNNNNTGG	1 cut(s)	160
VneI	GTGCAC	1 cut(s)	1014
VpaK11BI	GGWCC	1 cut(s)	122
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	6 cut(s)	4, 217, 235, 277, 544, 983
XmaI	CCCGGG	1 cut(s)	741
XmiI	GTMKAC	1 cut(s)	1040
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	4 cut(s)	414, 491, 785, 848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.