Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0012312

Physical Location & Seq

Genomic Coordinates Forward (+)

34500551 .. 34504988

Gene Structure 4438 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1237300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGCTGAAGGGACCTGCTTCTACTTCTACACCTCAGGATGCTTGCCAAGATTCTGCATCATTGGCAAAGACTGATAGAAGCAGCAGCACTAGCAGCTTCCCAATTAAGACTTTTTTAAATTCCATGGCAGCGGCGAATTTGGTCTTTGCCGACTTGGCAAAGGCTAGCACGGAGAAAATGTTGGACGGTGCTGTTTCAGTATATACCTTGGCTGATGGAGGCCCTGGAGAATGGTTTGGAGGCTTCCTATTTTCTGCTGGACAAGATGCTAATGAAGCTGTTCAAGACCAGCTATCAGCCCTCAGTTTCTCTAGTTTGGCAGTTATTTTTGGGGCTGGGCTGGTGACCAGCCTTTCTCCTTGTACTCTTAGCGTTTTACCGCTGACCCTAGGTTACATAGGAGCATTTGGCTCAGGGAAAAGCAAGGCAGAGGTTCTTGGGAATTCAATTGCGTTCTCCTTAGGATTGGCAACTACACTTGCACTCTTAGGCATAGGAGCCTCATTCGCTGGAAAGGCATATGGACAGACAGGGCAGGGGTTACCTTTGACTGCTTCAGGTTTAGCTATTATTATGGGCCTGAATCTCCTTGAGGTAATTGAACTACAGCTCCCCTCATTTTTTAGCAATTTTGATCCCCGGGCTGCTGCTGCTAATTTCCCTTCAAGTGTGCAAGCATATCTAGCTGGGCTTACATTTGCTTTAGCTGCCTCACCATGCAGTACGCCAGTGCTGGCCACTCTGCTTGGATATGTTGCTACGTCTAAGAATCCAGTTATAGGAGGCAGCTTACTTTTGACGTACACAAGCGGTTATGTTGCTCCTCTACTTCTTGCTGCTTCTTTTGCTGGAGCACTGCAGAGCCTACTTTCATTTCGCAAATTTTCAGCATGGATAAACCCAATCAGCGGTGCACTTCTGTTAGGAGGGGGTGTGTATACTTTCTTGGATAGGCTTTTCCCAGTTACAATGGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

327

Amino Acids

33.17

Weight (kDa)

5.08

Isoelectric Point (pI)

30.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DsbD_TM	PF02683	105 - 286	5.5e-22	Cytochrome C biogenesis protein transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54290 AT5G54290
fragaria_vesca	FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica	MD11G1237300.v1.1
prunus_persica	Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis	pycom11g20860
rosa_chinensis	RchiOBHm_Chr5g0035361
rosa_laevigata	RLG00000033620
rosa_multiflora	Rmu_co8507677.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045040
rosa_rugosa	Rorug05G0151400
rosa_samantha	Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana	Rw5G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	22
AccI	GTMKAC	1 cut(s)	938
AciI	CCGC	4 cut(s)	131, 380, 810, 909
AclWI	GGATC	1 cut(s)	629
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	4 cut(s)	118, 136, 442, 881
AcuI	CTGAAG	2 cut(s)	26, 540
AfaI	GTAC	3 cut(s)	364, 724, 803
AfiI	CCNNNNNNNGG	2 cut(s)	779, 908
AgsI	TTSAA	4 cut(s)	284, 447, 602, 666
AjnI	CCWGG	1 cut(s)	223
AloI	GAACNNNNNNTCC	2 cut(s)	594, 626
AluBI	AGCT	8 cut(s)	96, 278, 292, 566, 610, 686, 707, 789
AluI	AGCT	8 cut(s)	96, 278, 292, 566, 610, 686, 707, 789
Alw21I	GWGCWC	2 cut(s)	856, 916
Alw44I	GTGCAC	1 cut(s)	912
AlwI	GGATC	1 cut(s)	629
Ama87I	CYCGRG	1 cut(s)	639
AoxI	GGCC	3 cut(s)	220, 577, 735
ApaLI	GTGCAC	1 cut(s)	912
ApoI	RAATTY	4 cut(s)	118, 136, 442, 881
Asp700I	GAANNNNTTC	1 cut(s)	279
AspA2I	CCTAGG	1 cut(s)	388
AspS9I	GGNCC	3 cut(s)	11, 221, 577
AsuC2I	CCSGG	2 cut(s)	640, 641
AsuHPI	GGTGA	2 cut(s)	355, 705
AsuNHI	GCTAGC	1 cut(s)	164
AvaI	CYCGRG	1 cut(s)	639
AvaII	GGWCC	1 cut(s)	11
AvrII	CCTAGG	1 cut(s)	388
AxyI	CCTNAGG	2 cut(s)	33, 460
BaeGI	GKGCMC	1 cut(s)	916
BalI	TGGCCA	1 cut(s)	737
Bbv12I	GWGCWC	2 cut(s)	856, 916
BccI	CCATC	1 cut(s)	209
BciT130I	CCWGG	1 cut(s)	225
BcnI	CCSGG	2 cut(s)	640, 641
BfaI	CTAG	5 cut(s)	90, 165, 312, 389, 683
BfmI	CTRYAG	2 cut(s)	605, 857
BfuAI	ACCTGC	1 cut(s)	22
BglI	GCCNNNNNGGC	1 cut(s)	155
BlnI	CCTAGG	1 cut(s)	388
Bme1390I	CCNGG	3 cut(s)	225, 640, 641
Bme18I	GGWCC	1 cut(s)	11
BmeT110I	CYCGRG	1 cut(s)	639
BmgT120I	GGNCC	3 cut(s)	11, 221, 577
BmiI	GGNNCC	2 cut(s)	12, 499
BmrFI	CCNGG	3 cut(s)	225, 640, 641
BmrI	ACTGGG	1 cut(s)	956
BmsI	GCATC	3 cut(s)	28, 65, 256
BmtI	GCTAGC	1 cut(s)	168
BmuI	ACTGGG	1 cut(s)	956
BpmI	CTGGAG	2 cut(s)	246, 870
Bpu10I	CCTNAGC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	611
BpuMI	CCSGG	2 cut(s)	640, 641
BsaJI	CCNNGG	6 cut(s)	123, 207, 223, 388, 638, 639
BsaXI	ACNNNNNCTCC	6 cut(s)	164, 194, 594, 624, 918, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	779, 908
Bse1I	ACTGG	3 cut(s)	728, 773, 962
Bse21I	CCTNAGG	2 cut(s)	33, 460
Bse3DI	GCAATG	1 cut(s)	981
BseBI	CCWGG	1 cut(s)	225
BseDI	CCNNGG	6 cut(s)	123, 207, 223, 388, 638, 639
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	2 cut(s)	779, 908
BseMI	GCAATG	1 cut(s)	981
BseMII	CTCAG	3 cut(s)	47, 316, 426
BseNI	ACTGG	3 cut(s)	728, 773, 962
BseRI	GAGGAG	1 cut(s)	813
BseSI	GKGCMC	1 cut(s)	916
BseYI	CCCAGC	2 cut(s)	335, 686
BshFI	GGCC	3 cut(s)	222, 579, 737
BsiHKAI	GWGCWC	2 cut(s)	856, 916
BsiHKCI	CYCGRG	1 cut(s)	639
BsiSI	CCGG	1 cut(s)	640
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	779, 908
BsmFI	GGGAC	1 cut(s)	24
BsnI	GGCC	3 cut(s)	222, 579, 737
BsoBI	CYCGRG	1 cut(s)	639
Bsp1286I	GDGCHC	2 cut(s)	856, 916
Bsp143I	GATC	1 cut(s)	634
Bsp19I	CCATGG	1 cut(s)	123
BspACI	CCGC	4 cut(s)	131, 380, 810, 909
BspANI	GGCC	3 cut(s)	222, 579, 737
BspCNI	CTCAG	3 cut(s)	46, 315, 425
BspLI	GGNNCC	2 cut(s)	12, 499
BspMAI	CTGCAG	1 cut(s)	861
BspMI	ACCTGC	1 cut(s)	22
BspOI	GCTAGC	1 cut(s)	168
BspPI	GGATC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	981
BsrI	ACTGG	3 cut(s)	728, 773, 962
BssECI	CCNNGG	6 cut(s)	123, 207, 223, 388, 638, 639
BssMI	GATC	1 cut(s)	634
BssNAI	GTATAC	1 cut(s)	939
BssT1I	CCWWGG	3 cut(s)	123, 207, 388
Bst1107I	GTATAC	1 cut(s)	939
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	43, 166, 675, 735
BstDEI	CTNAG	7 cut(s)	33, 302, 368, 412, 460, 487, 765
BstDSI	CCRYGG	1 cut(s)	123
BstEII	GGTNACC	2 cut(s)	343, 540
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	1 cut(s)	637
BstMBI	GATC	1 cut(s)	634
BstNI	CCWGG	1 cut(s)	225
BstPI	GGTNACC	2 cut(s)	343, 540
BstSCI	CCNGG	3 cut(s)	223, 638, 639
BstSFI	CTRYAG	2 cut(s)	605, 857
BstSLI	GKGCMC	1 cut(s)	916
BstZ17I	GTATAC	1 cut(s)	939
Bsu36I	CCTNAGG	2 cut(s)	33, 460
BsuRI	GGCC	3 cut(s)	222, 579, 737
BtgI	CCRYGG	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	43
BtsI	GCAGTG	1 cut(s)	854
BtsIMutI	CAGTG	2 cut(s)	735, 854
BveI	ACCTGC	1 cut(s)	22
Cac8I	GCNNGC	4 cut(s)	43, 166, 675, 735
Cfr13I	GGNCC	3 cut(s)	11, 221, 577
Cfr9I	CCCGGG	1 cut(s)	639
Csp6I	GTAC	3 cut(s)	363, 723, 802
CspCI	CAANNNNNGTGG	2 cut(s)	727, 762
CviAII	CATG	3 cut(s)	124, 717, 891
CviQI	GTAC	3 cut(s)	363, 723, 802
DdeI	CTNAG	7 cut(s)	33, 302, 368, 412, 460, 487, 765
DpnI	GATC	1 cut(s)	636
DpnII	GATC	1 cut(s)	634
DraI	TTTAAA	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	735
Eco130I	CCWWGG	3 cut(s)	123, 207, 388
Eco47I	GGWCC	1 cut(s)	11
Eco57I	CTGAAG	2 cut(s)	26, 540
Eco81I	CCTNAGG	2 cut(s)	33, 460
Eco88I	CYCGRG	1 cut(s)	639
Eco91I	GGTNACC	2 cut(s)	343, 540
EcoO109I	RGGNCCY	2 cut(s)	11, 221
EcoO65I	GGTNACC	2 cut(s)	343, 540
EcoRI	GAATTC	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	223
EcoT14I	CCWWGG	3 cut(s)	123, 207, 388
ErhI	CCWWGG	3 cut(s)	123, 207, 388
FaeI	CATG	3 cut(s)	127, 720, 894
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	3 cut(s)	123, 716, 890
FauNDI	CATATG	1 cut(s)	520
FblI	GTMKAC	1 cut(s)	938
FokI	GGATG	1 cut(s)	50
FspBI	CTAG	5 cut(s)	90, 165, 312, 389, 683
GsaI	CCCAGC	2 cut(s)	339, 690
GsuI	CTGGAG	2 cut(s)	246, 870
HaeIII	GGCC	3 cut(s)	222, 579, 737
HapII	CCGG	1 cut(s)	640
Hin1II	CATG	3 cut(s)	127, 720, 894
HinfI	GANTC	3 cut(s)	50, 583, 769
HpaII	CCGG	1 cut(s)	640
HphI	GGTGA	2 cut(s)	355, 705
Hpy166II	GTNNAC	3 cut(s)	804, 914, 939
Hpy188III	TCNNGA	2 cut(s)	35, 284
Hpy8I	GTNNAC	3 cut(s)	804, 914, 939
HpyAV	CCTTC	1 cut(s)	672
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	761, 800
HpyCH4V	TGCA	6 cut(s)	56, 482, 673, 720, 859, 914
HpyF3I	CTNAG	7 cut(s)	33, 302, 368, 412, 460, 487, 765
HpySE526I	ACGT	2 cut(s)	761, 800
Hsp92II	CATG	3 cut(s)	127, 720, 894
Kzo9I	GATC	1 cut(s)	634
LmnI	GCTCC	5 cut(s)	401, 497, 615, 826, 851
LweI	GCATC	3 cut(s)	28, 65, 256
MaeI	CTAG	5 cut(s)	90, 165, 312, 389, 683
MaeII	ACGT	2 cut(s)	761, 800
MaeIII	GTNAC	4 cut(s)	343, 392, 540, 964
MalI	GATC	1 cut(s)	636
MboI	GATC	1 cut(s)	634
MfeI	CAATTG	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	856, 916
MlsI	TGGCCA	1 cut(s)	737
MluCI	AATT	9 cut(s)	102, 118, 136, 442, 447, 597, 628, 655, 881
MluNI	TGGCCA	1 cut(s)	737
MmeI	TCCRAC	1 cut(s)	162
Mox20I	TGGCCA	1 cut(s)	737
MroXI	GAANNNNTTC	1 cut(s)	279
MscI	TGGCCA	1 cut(s)	737
MseI	TTAA	2 cut(s)	105, 116
Msp20I	TGGCCA	1 cut(s)	737
MspA1I	CMGCKG	3 cut(s)	131, 382, 909
MspI	CCGG	1 cut(s)	640
MspR9I	CCNGG	3 cut(s)	225, 640, 641
MunI	CAATTG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	225
NciI	CCSGG	2 cut(s)	640, 641
NcoI	CCATGG	1 cut(s)	123
NdeI	CATATG	1 cut(s)	520
NdeII	GATC	1 cut(s)	634
NheI	GCTAGC	1 cut(s)	164
NlaIII	CATG	3 cut(s)	127, 720, 894
NlaIV	GGNNCC	2 cut(s)	12, 499
NmuCI	GTSAC	1 cut(s)	343
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	50, 583, 769
PpuMI	RGGWCCY	1 cut(s)	11
Psp5II	RGGWCCY	1 cut(s)	11
Psp6I	CCWGG	1 cut(s)	223
PspEI	GGTNACC	2 cut(s)	343, 540
PspFI	CCCAGC	2 cut(s)	335, 686
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	2 cut(s)	12, 499
PspPI	GGNCC	3 cut(s)	11, 221, 577
PspPPI	RGGWCCY	1 cut(s)	11
PstI	CTGCAG	1 cut(s)	861
RsaI	GTAC	3 cut(s)	364, 724, 803
RsaNI	GTAC	3 cut(s)	363, 723, 802
SaqAI	TTAA	2 cut(s)	105, 116
Sau3AI	GATC	1 cut(s)	634
Sau96I	GGNCC	3 cut(s)	11, 221, 577
ScrFI	CCNGG	3 cut(s)	225, 640, 641
SduI	GDGCHC	2 cut(s)	856, 916
SfaNI	GCATC	3 cut(s)	28, 65, 256
SfcI	CTRYAG	2 cut(s)	605, 857
SinI	GGWCC	1 cut(s)	11
SmaI	CCCGGG	1 cut(s)	641
SmlI	CTYRAG	1 cut(s)	590
SmoI	CTYRAG	1 cut(s)	590
Sse9I	AATT	9 cut(s)	102, 118, 136, 442, 447, 597, 628, 655, 881
SsiI	CCGC	4 cut(s)	131, 380, 810, 909
SspMI	CTAG	5 cut(s)	90, 165, 312, 389, 683
StyD4I	CCNGG	3 cut(s)	223, 638, 639
StyI	CCWWGG	3 cut(s)	123, 207, 388
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	764, 803
TasI	AATT	9 cut(s)	102, 118, 136, 442, 447, 597, 628, 655, 881
TatI	WGTACW	1 cut(s)	362
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	50, 583, 769
Tru1I	TTAA	2 cut(s)	105, 116
Tru9I	TTAA	2 cut(s)	105, 116
TscAI	CASTG	2 cut(s)	735, 861
TseFI	GTSAC	1 cut(s)	343
Tsp45I	GTSAC	1 cut(s)	343
TspDTI	ATGAA	2 cut(s)	288, 861
TspGWI	ACGGA	1 cut(s)	185
TspMI	CCCGGG	1 cut(s)	639
TspRI	CASTG	2 cut(s)	735, 861
VneI	GTGCAC	1 cut(s)	912
VpaK11BI	GGWCC	1 cut(s)	11
XapI	RAATTY	4 cut(s)	118, 136, 442, 881
XmaI	CCCGGG	1 cut(s)	639
XmaJI	CCTAGG	1 cut(s)	388
XmiI	GTMKAC	1 cut(s)	938
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	5 cut(s)	90, 165, 312, 389, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.