Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012312

Physical Location & Seq

Genomic Coordinates Reverse (-)

29904941 .. 29985834

Gene Structure 80894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG275900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATTCCGATAACAAGCACAACAGTCAGATTATGCTTCACTATTGCAAAGACTCCGAGGATATTACCAAGACTATGACGAGCCTGAGGGCGTTCTCCACCGACATCTCGAAGGGAACCGAGTCGTCGGCTCTGGAGCTGGCTTGGACCACCGGAGCTAATGGACTGTTCCAACGGTTGCCATATAGCTTGCTTTCTCTGCTGCTCTGTGAAGTAAATCCAATCTCCCAAGTCGAGATGAATTTGGCTATCAACCATTGCGGCAGTTACAGCATTAATAATTCTTTCACCACTTCAAGCTGGAAGCGTGGCCGGAAAACTAGTCATGGTAGATATATGGTGCCCATCGGAGAGCTGAAGGCCCATTCTACACCTCAGAATGTTGGCCAAGATTTTGCACCACTGGCAAAGAATGATGGAAGCAGCAGCTTTCAAATGAAGACGTTTGTAAATGCCATAGCAGTGGGAAATTTGGTCTTCACAGACGTGGCAAAGGCTGTAACTACGGGGAATATCCTGGAAGGTGCTGTATCAGTTTATGACATTGCTGAAGGAGGAGCTGGAGATTGGTTTGGAGGCTTCCTATTTACTACTGGACAACAAGCTAATGAAGCTGTTCAAGACCAGTTATCAGCCCTCAGTTTCTCCAGTTTGGCAGTTATTTTTGGTGCCGGGCTTGTTACTAGCCTTTCTCCTTGTACTCTTAGCGTTCTACCACTGACCCTTGGTTACATAGGAGCATTTGGTTCAGGGAAAAGCAGGGCACAGGTTATTGGGGATTCAATTGCATTCTCATTAGGATTGGCAACTACACTTGCACTCTTAGGCATTGCAGCCTCATTTGCTGGAAAGGCATATGGACAGACAGGGCAGGGATTACCAGTGGCTGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTCCTTGAGGTATTTATTTATGTGCTAGCGTCATTTTTGTTTTCAGCTCACGTGTCTTTAATAACATTTTCTTCACCTATCAATTTTTTATCCTCTCCACTTTTTGTCTCTGAGAAATACCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

348

Amino Acids

36.69

Weight (kDa)

5.85

Isoelectric Point (pI)

29.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DsbD_TM	PF02683	217 - 306	3.7e-08	Cytochrome C biogenesis protein transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54290 AT5G54290
fragaria_vesca	FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica	MD11G1237300.v1.1
prunus_persica	Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis	pycom11g20860
rosa_chinensis	RchiOBHm_Chr5g0035361
rosa_laevigata	RLG00000033620
rosa_multiflora	Rmu_co8507677.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045040
rosa_rugosa	Rorug05G0151400
rosa_samantha	Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana	Rw5G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	340, 668
AciI	CCGC	1 cut(s)	261
AcoI	YGGCCR	2 cut(s)	310, 385
AcsI	RAATTY	2 cut(s)	241, 469
AcuI	CTGAAG	3 cut(s)	377, 570, 876
AcvI	CACGTG	1 cut(s)	973
AfaI	GTAC	1 cut(s)	700
AflIII	ACRYGT	1 cut(s)	972
AgsI	TTSAA	5 cut(s)	297, 434, 620, 783, 919
AhlI	ACTAGT	1 cut(s)	320
AjiI	CACGTC	1 cut(s)	487
AjnI	CCWGG	1 cut(s)	516
AleI	CACNNNNGTG	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	1033
AlwNI	CAGNNNCTG	1 cut(s)	887
AoxI	GGCC	3 cut(s)	310, 360, 385
ApeKI	GCWGC	5 cut(s)	202, 423, 426, 833, 887
ApoI	RAATTY	2 cut(s)	241, 469
AseI	ATTAAT	1 cut(s)	276
Asp700I	GAANNNNTTC	1 cut(s)	615
AspS9I	GGNCC	2 cut(s)	147, 361
AsuC2I	CCSGG	1 cut(s)	673
AsuHPI	GGTGA	2 cut(s)	280, 987
AsuNHI	GCTAGC	1 cut(s)	946
AvaII	GGWCC	1 cut(s)	147
AxyI	CCTNAGG	1 cut(s)	86
BaeGI	GKGCMC	2 cut(s)	345, 766
BalI	TGGCCA	1 cut(s)	387
BanI	GGYRCC	2 cut(s)	340, 668
BbrPI	CACGTG	1 cut(s)	973
BbsI	GAAGAC	2 cut(s)	446, 469
BbvI	GCAGC	5 cut(s)	189, 435, 438, 845, 874
BccI	CCATC	2 cut(s)	353, 410
BciT130I	CCWGG	1 cut(s)	518
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	1 cut(s)	1033
BcuI	ACTAGT	1 cut(s)	320
BfaI	CTAG	3 cut(s)	321, 684, 947
BisI	GCNGC	6 cut(s)	203, 262, 424, 427, 834, 888
BlsI	GCNGC	6 cut(s)	204, 263, 425, 428, 835, 889
Bme1390I	CCNGG	2 cut(s)	518, 673
Bme18I	GGWCC	1 cut(s)	147
BmgBI	CACGTC	1 cut(s)	487
BmgT120I	GGNCC	2 cut(s)	147, 361
BmiI	GGNNCC	3 cut(s)	118, 342, 670
BmrFI	CCNGG	2 cut(s)	518, 673
BmtI	GCTAGC	1 cut(s)	950
BpiI	GAAGAC	2 cut(s)	446, 469
BpmI	CTGGAG	3 cut(s)	155, 582, 631
BpuEI	CTTGAG	1 cut(s)	947
BpuMI	CCSGG	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	973
BsaJI	CCNNGG	2 cut(s)	57, 724
BsaWI	WCCGGW	1 cut(s)	152
Bse1I	ACTGG	5 cut(s)	408, 598, 625, 648, 881
Bse21I	CCTNAGG	1 cut(s)	86
Bse3DI	GCAATG	3 cut(s)	256, 543, 828
BseBI	CCWGG	1 cut(s)	518
BseDI	CCNNGG	2 cut(s)	57, 724
BseMI	GCAATG	3 cut(s)	256, 543, 828
BseMII	CTCAG	4 cut(s)	77, 389, 652, 1023
BseNI	ACTGG	5 cut(s)	408, 598, 625, 648, 881
BseRI	GAGGAG	1 cut(s)	570
BseSI	GKGCMC	2 cut(s)	345, 766
BseXI	GCAGC	5 cut(s)	189, 435, 438, 845, 874
BshFI	GGCC	3 cut(s)	312, 362, 387
BshNI	GGYRCC	2 cut(s)	340, 668
BsiSI	CCGG	3 cut(s)	153, 313, 672
BsmAI	GTCTC	1 cut(s)	1033
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	3 cut(s)	312, 362, 387
Bsp1286I	GDGCHC	2 cut(s)	345, 766
BspACI	CCGC	1 cut(s)	261
BspANI	GGCC	3 cut(s)	312, 362, 387
BspCNI	CTCAG	4 cut(s)	78, 388, 651, 1024
BspLI	GGNNCC	3 cut(s)	118, 342, 670
BspOI	GCTAGC	1 cut(s)	950
BspT107I	GGYRCC	2 cut(s)	340, 668
BsrDI	GCAATG	3 cut(s)	256, 543, 828
BsrI	ACTGG	5 cut(s)	408, 598, 625, 648, 881
BssECI	CCNNGG	2 cut(s)	57, 724
BssT1I	CCWWGG	1 cut(s)	724
Bst2UI	CCWGG	1 cut(s)	518
Bst4CI	ACNGT	3 cut(s)	26, 168, 177
BstBAI	YACGTR	1 cut(s)	973
BstC8I	GCNNGC	3 cut(s)	141, 191, 948
BstDEI	CTNAG	6 cut(s)	86, 375, 638, 704, 823, 1032
BstMAI	GTCTC	1 cut(s)	1033
BstMWI	GCNNNNNNNGC	6 cut(s)	199, 270, 404, 611, 842, 851
BstNI	CCWGG	1 cut(s)	518
BstSCI	CCNGG	2 cut(s)	516, 671
BstSLI	GKGCMC	2 cut(s)	345, 766
BstV1I	GCAGC	5 cut(s)	189, 435, 438, 845, 874
BstV2I	GAAGAC	2 cut(s)	446, 469
BstXI	CCANNNNNNTGG	1 cut(s)	463
Bsu36I	CCTNAGG	1 cut(s)	86
BsuRI	GGCC	3 cut(s)	312, 362, 387
BtrI	CACGTC	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	4 cut(s)	401, 468, 716, 888
Cac8I	GCNNGC	3 cut(s)	141, 191, 948
CaiI	CAGNNNCTG	1 cut(s)	887
Cfr13I	GGNCC	2 cut(s)	147, 361
CseI	GACGC	1 cut(s)	939
Csp6I	GTAC	1 cut(s)	699
CviAII	CATG	1 cut(s)	326
CviQI	GTAC	1 cut(s)	699
DdeI	CTNAG	6 cut(s)	86, 375, 638, 704, 823, 1032
EaeI	YGGCCR	2 cut(s)	310, 385
Eco130I	CCWWGG	1 cut(s)	724
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	3 cut(s)	377, 570, 876
Eco72I	CACGTG	1 cut(s)	973
Eco81I	CCTNAGG	1 cut(s)	86
EcoRII	CCWGG	1 cut(s)	516
EcoT14I	CCWWGG	1 cut(s)	724
ErhI	CCWWGG	1 cut(s)	724
FaeI	CATG	1 cut(s)	329
FatI	CATG	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	856
Fnu4HI	GCNGC	6 cut(s)	203, 262, 424, 427, 834, 888
Fsp4HI	GCNGC	6 cut(s)	203, 262, 424, 427, 834, 888
FspBI	CTAG	3 cut(s)	321, 684, 947
GluI	GCNGC	6 cut(s)	203, 262, 424, 427, 834, 888
GsuI	CTGGAG	3 cut(s)	155, 582, 631
HaeIII	GGCC	3 cut(s)	312, 362, 387
HapII	CCGG	3 cut(s)	153, 313, 672
HgaI	GACGC	1 cut(s)	939
Hin1II	CATG	1 cut(s)	329
HinfI	GANTC	5 cut(s)	5, 53, 122, 779, 919
HpaII	CCGG	3 cut(s)	153, 313, 672
HphI	GGTGA	2 cut(s)	280, 987
Hpy188I	TCNGA	6 cut(s)	10, 30, 58, 350, 378, 1033
Hpy188III	TCNNGA	4 cut(s)	109, 134, 235, 620
Hpy99I	CGWCG	1 cut(s)	130
HpyAV	CCTTC	4 cut(s)	106, 352, 515, 545
HpyCH4III	ACNGT	3 cut(s)	26, 168, 177
HpyCH4IV	ACGT	3 cut(s)	443, 486, 972
HpyCH4V	TGCA	5 cut(s)	48, 398, 788, 818, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	199, 270, 404, 611, 842, 851
HpyF3I	CTNAG	6 cut(s)	86, 375, 638, 704, 823, 1032
HpySE526I	ACGT	3 cut(s)	443, 486, 972
Hsp92II	CATG	1 cut(s)	329
LmnI	GCTCC	4 cut(s)	136, 155, 557, 737
Lsp1109I	GCAGC	5 cut(s)	189, 435, 438, 845, 874
MaeI	CTAG	3 cut(s)	321, 684, 947
MaeII	ACGT	3 cut(s)	443, 486, 972
MaeIII	GTNAC	4 cut(s)	266, 499, 679, 728
MboII	GAAGA	3 cut(s)	451, 469, 984
MfeI	CAATTG	1 cut(s)	783
MhlI	GDGCHC	2 cut(s)	345, 766
MlsI	TGGCCA	1 cut(s)	387
MluCI	AATT	5 cut(s)	241, 280, 469, 783, 1003
MluNI	TGGCCA	1 cut(s)	387
MlyI	GAGTC	2 cut(s)	47, 131
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	9 cut(s)	52, 81, 384, 548, 569, 647, 847, 922, 1024
Mox20I	TGGCCA	1 cut(s)	387
MroXI	GAANNNNTTC	1 cut(s)	615
MscI	TGGCCA	1 cut(s)	387
MseI	TTAA	2 cut(s)	276, 980
MslI	CAYNNNNRTG	2 cut(s)	461, 485
Msp20I	TGGCCA	1 cut(s)	387
MspI	CCGG	3 cut(s)	153, 313, 672
MspR9I	CCNGG	2 cut(s)	518, 673
MunI	CAATTG	1 cut(s)	783
Mva1269I	GAATGC	1 cut(s)	788
MvaI	CCWGG	1 cut(s)	518
MwoI	GCNNNNNNNGC	6 cut(s)	199, 270, 404, 611, 842, 851
NciI	CCSGG	1 cut(s)	673
NdeI	CATATG	1 cut(s)	856
NheI	GCTAGC	1 cut(s)	946
NlaIII	CATG	1 cut(s)	329
NlaIV	GGNNCC	3 cut(s)	118, 342, 670
OliI	CACNNNNGTG	1 cut(s)	485
PctI	GAATGC	1 cut(s)	788
PdmI	GAANNNNTTC	1 cut(s)	615
PfeI	GAWTC	3 cut(s)	5, 779, 919
PfoI	TCCNGGA	1 cut(s)	516
PkrI	GCNGC	6 cut(s)	204, 263, 425, 428, 835, 889
PleI	GAGTC	2 cut(s)	47, 130
PmaCI	CACGTG	1 cut(s)	973
PmlI	CACGTG	1 cut(s)	973
PpsI	GAGTC	2 cut(s)	47, 130
Ppu21I	YACGTR	1 cut(s)	973
PshBI	ATTAAT	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	516
PspCI	CACGTG	1 cut(s)	973
PspGI	CCWGG	1 cut(s)	516
PspN4I	GGNNCC	3 cut(s)	118, 342, 670
PspPI	GGNCC	2 cut(s)	147, 361
PstNI	CAGNNNCTG	1 cut(s)	887
RsaI	GTAC	1 cut(s)	700
RsaNI	GTAC	1 cut(s)	699
RseI	CAYNNNNRTG	2 cut(s)	461, 485
SaqAI	TTAA	2 cut(s)	276, 980
SatI	GCNGC	6 cut(s)	203, 262, 424, 427, 834, 888
Sau96I	GGNCC	2 cut(s)	147, 361
SchI	GAGTC	2 cut(s)	47, 131
ScrFI	CCNGG	2 cut(s)	518, 673
SduI	GDGCHC	2 cut(s)	345, 766
SinI	GGWCC	1 cut(s)	147
SmiMI	CAYNNNNRTG	2 cut(s)	461, 485
SmlI	CTYRAG	1 cut(s)	926
SmoI	CTYRAG	1 cut(s)	926
SpeI	ACTAGT	1 cut(s)	320
Sse9I	AATT	5 cut(s)	241, 280, 469, 783, 1003
SsiI	CCGC	1 cut(s)	261
SspMI	CTAG	3 cut(s)	321, 684, 947
StyD4I	CCNGG	2 cut(s)	516, 671
StyI	CCWWGG	1 cut(s)	724
TaaI	ACNGT	3 cut(s)	26, 168, 177
TaiI	ACGT	3 cut(s)	446, 489, 975
TaqI	TCGA	2 cut(s)	110, 234
TasI	AATT	5 cut(s)	241, 280, 469, 783, 1003
TatI	WGTACW	1 cut(s)	698
TauI	GCSGC	1 cut(s)	264
TfiI	GAWTC	3 cut(s)	5, 779, 919
Tru1I	TTAA	2 cut(s)	276, 980
Tru9I	TTAA	2 cut(s)	276, 980
TscAI	CASTG	4 cut(s)	408, 468, 723, 888
TseI	GCWGC	5 cut(s)	202, 423, 426, 833, 887
TspDTI	ATGAA	3 cut(s)	254, 452, 624
TspRI	CASTG	4 cut(s)	408, 468, 723, 888
VpaK11BI	GGWCC	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	276
XapI	RAATTY	2 cut(s)	241, 469
XmnI	GAANNNNTTC	1 cut(s)	615
XspI	CTAG	3 cut(s)	321, 684, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.