RLG00000033620

Cytochrome c-type biogenesis ccda-like chloroplastic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012312
Physical Location & Seq
Reverse (-)
29677119 .. 29681593
4475 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033620

Sequence Viewer

Length: 1185 bp
ATGATTGAGACATTGTTTGAGATCCCACAAATTTATTCCACTGGTTGCCACGGCTTGGTTTCTCTGCTGCTCTGTAAAGAAAATCCGAACTCCCAAGACAAGATGAGTTTGGCTATCAACCATTGCGGCAGTTACGGCATTAATAATTCTTTCACCACTTCAAGCTGGAAGCGTGGCCGGAAAACTAATCATGGTAGATATATGGTGCCCATCGGAGCGCTGAAGGGCCATTCTACACCTCAGAAGGTTTGCAAAGATTTTGCACCATTGGCAAAGAATGATGGAAGCAGCAGCTTTCAAGTGAAGACATTTGTAAATGCCATAGCAGTGGGAAATTTGGTCTTCACAGACATGGCAAAGGCTGTAACTACGGGGAATATCCTGGAAGGTGCTGTATCAGTTTATGACATTGCTGAAGGAGGAGCTGGAGATTGGTTTGGAGGCTTCCTATTTACTACTGGACAACAAGCTAATGAAGCTGTTCAAGATCAGTTATCAGCCCTAAGTTTCTCCAGTTTGGCAGTTATTTTTGGAGCCGGGCTTGTTACTAGCCTTTCTCCTTGTACTCTTAGCGTTCTACCACTGACCCTTGGTTACATAGGAGCATTTGGTTCAGGGAAAAGCAGGGCACAGGTTATTGGGGATTCAATTGCGTTCTCATTAGGATTGGCAACTACACTTGCACTTTTAGGCATTGCAGCCTCATTCGCTGGAAAGGCATATGGACAGACAGGGCAGGGATTACCAGTAGCTGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTCCTTGAGATAATTGAACTACAGCTGCCATCCTTTTTTGACAACTTTGATCCCCGGGCTGCTGCTGCTAATTTTCCATCAAGCGTGCAAGCTTATCTAGCTGGACTTACATTTGCTTTAGCGGCCTCTCCATGCAGTACACCAGTGCTGGCCACACTGCTAGGATATGTAGCTACGTCCAAGGATCCATTTATTGGAGGCAGCCTACTTTTGACGTACACAACTGGTTATGTTGCTCCTCTACTTCTTGCTGCTTCTTTTGCTGGAGCATTGCAGAGCCTGCTTTCGTTTCGCAAATTTTCAGCATGGATCAACCCAATCAGTGGTGCCCTTCTATTGGGAGGGGGAGTGTATACTTTCTTGGATCGGCTTTTCCCAGCTACTACAATGGCAATGTAG

Protein Analysis

395

Amino Acids

40.93

Weight (kDa)

7.58

Isoelectric Point (pI)

31.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_TM PF02683 172 - 353 4e-23 Cytochrome C biogenesis protein transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54290 AT5G54290
fragaria_vesca FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica MD11G1237300.v1.1
prunus_persica Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis pycom11g20860
rosa_chinensis RchiOBHm_Chr5g0035361
rosa_laevigata RLG00000033620
rosa_multiflora Rmu_co8507677.1_g000001
rosa_roxburghii Rroxscaffold_1G00045040
rosa_rugosa Rorug05G0151400
rosa_samantha Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana Rw5G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 205, 1112
AccB7I CCANNNNNTGG 3 cut(s) 55, 980, 1109
AccI GTMKAC 1 cut(s) 1139
AciI CCGC 2 cut(s) 126, 908
AclWI GGATC 6 cut(s) 16, 830, 965, 978, 1103, 1158
AcoI YGGCCR 2 cut(s) 175, 936
AcsI RAATTY 3 cut(s) 30, 334, 1082
AcuI CTGAAG 3 cut(s) 242, 435, 741
AfaI GTAC 3 cut(s) 565, 925, 1004
AfeI AGCGCT 1 cut(s) 219
AfiI CCNNNNNNNGG 4 cut(s) 55, 980, 1109, 1123
AgsI TTSAA 6 cut(s) 162, 299, 485, 648, 784, 803
AjnI CCWGG 1 cut(s) 381
Alw26I GTCTC 1 cut(s) 2
AlwI GGATC 6 cut(s) 16, 830, 965, 978, 1103, 1158
AlwNI CAGNNNCTG 2 cut(s) 752, 1066
Ama87I CYCGRG 1 cut(s) 840
Aor51HI AGCGCT 1 cut(s) 219
AoxI GGCC 4 cut(s) 175, 226, 909, 936
ApoI RAATTY 3 cut(s) 30, 334, 1082
AseI ATTAAT 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 480
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 226
AsuC2I CCSGG 3 cut(s) 538, 841, 842
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 1 cut(s) 840
BaeGI GKGCMC 3 cut(s) 210, 631, 1117
BalI TGGCCA 1 cut(s) 938
BamHI GGATCC 1 cut(s) 970
BanI GGYRCC 2 cut(s) 205, 1112
BbsI GAAGAC 2 cut(s) 311, 334
BccI CCATC 4 cut(s) 218, 275, 823, 871
BceAI ACGGC 2 cut(s) 67, 151
BciT130I CCWGG 1 cut(s) 383
BcnI CCSGG 3 cut(s) 538, 841, 842
BcoDI GTCTC 1 cut(s) 2
BfaI CTAG 3 cut(s) 549, 884, 947
BfmI CTRYAG 1 cut(s) 806
BfoI RGCGCY 1 cut(s) 221
Bme1390I CCNGG 4 cut(s) 383, 538, 841, 842
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 1 cut(s) 226
BmiI GGNNCC 4 cut(s) 207, 535, 972, 1114
BmrFI CCNGG 4 cut(s) 383, 538, 841, 842
BpiI GAAGAC 2 cut(s) 311, 334
BpmI CTGGAG 3 cut(s) 447, 496, 1071
BpuEI CTTGAG 1 cut(s) 812
BpuMI CCSGG 3 cut(s) 538, 841, 842
BsaJI CCNNGG 5 cut(s) 49, 589, 839, 840, 966
BsaXI ACNNNNNCTCC 2 cut(s) 1119, 1149
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 980, 1109, 1123
Bse1I ACTGG 6 cut(s) 46, 463, 513, 746, 929, 1015
Bse3DI GCAATG 5 cut(s) 121, 408, 693, 1055, 1185
BseBI CCWGG 1 cut(s) 383
BseDI CCNNGG 5 cut(s) 49, 589, 839, 840, 966
BseGI GGATG 1 cut(s) 815
BseLI CCNNNNNNNGG 4 cut(s) 55, 980, 1109, 1123
BseMI GCAATG 5 cut(s) 121, 408, 693, 1055, 1185
BseMII CTCAG 1 cut(s) 254
BseNI ACTGG 6 cut(s) 46, 463, 513, 746, 929, 1015
BseRI GAGGAG 2 cut(s) 435, 1014
BseSI GKGCMC 3 cut(s) 210, 631, 1117
BseYI CCCAGC 1 cut(s) 1162
BshFI GGCC 4 cut(s) 177, 228, 911, 938
BshNI GGYRCC 2 cut(s) 205, 1112
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 3 cut(s) 178, 537, 841
BslI CCNNNNNNNGG 4 cut(s) 55, 980, 1109, 1123
BsmAI GTCTC 1 cut(s) 2
BsnI GGCC 4 cut(s) 177, 228, 911, 938
BsoBI CYCGRG 1 cut(s) 840
Bsp1286I GDGCHC 3 cut(s) 210, 631, 1117
Bsp143I GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
BspACI CCGC 2 cut(s) 126, 908
BspANI GGCC 4 cut(s) 177, 228, 911, 938
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 4 cut(s) 207, 535, 972, 1114
BspPI GGATC 6 cut(s) 16, 830, 965, 978, 1103, 1158
BspT107I GGYRCC 2 cut(s) 205, 1112
BsrDI GCAATG 5 cut(s) 121, 408, 693, 1055, 1185
BsrI ACTGG 6 cut(s) 46, 463, 513, 746, 929, 1015
BssECI CCNNGG 5 cut(s) 49, 589, 839, 840, 966
BssMI GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
BssNAI GTATAC 1 cut(s) 1140
BssT1I CCWWGG 2 cut(s) 589, 966
Bst1107I GTATAC 1 cut(s) 1140
Bst2UI CCWGG 1 cut(s) 383
BstAPI GCANNNNNTGC 1 cut(s) 1066
BstC8I GCNNGC 4 cut(s) 872, 876, 936, 1067
BstDEI CTNAG 3 cut(s) 240, 503, 569
BstDSI CCRYGG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 815
BstH2I RGCGCY 1 cut(s) 221
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 6 cut(s) 24, 490, 838, 973, 1098, 1153
BstMAI GTCTC 1 cut(s) 2
BstMBI GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
BstNI CCWGG 1 cut(s) 383
BstSCI CCNGG 4 cut(s) 381, 536, 839, 840
BstSFI CTRYAG 1 cut(s) 806
BstSLI GKGCMC 3 cut(s) 210, 631, 1117
BstV2I GAAGAC 2 cut(s) 311, 334
BstX2I RGATCY 2 cut(s) 21, 970
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 2 cut(s) 21, 970
BstZ17I GTATAC 1 cut(s) 1140
BsuRI GGCC 4 cut(s) 177, 228, 911, 938
BtgI CCRYGG 1 cut(s) 49
BtsCI GGATG 1 cut(s) 815
BtsI GCAGTG 2 cut(s) 333, 941
BtsIMutI CAGTG 6 cut(s) 39, 333, 581, 936, 941, 1114
Cac8I GCNNGC 4 cut(s) 872, 876, 936, 1067
CaiI CAGNNNCTG 2 cut(s) 752, 1066
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 226
Cfr9I CCCGGG 1 cut(s) 840
Csp6I GTAC 3 cut(s) 564, 924, 1003
CviAII CATG 4 cut(s) 191, 352, 918, 1092
CviQI GTAC 3 cut(s) 564, 924, 1003
DdeI CTNAG 3 cut(s) 240, 503, 569
DpnI GATC 6 cut(s) 23, 489, 837, 972, 1097, 1152
DpnII GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
EaeI YGGCCR 2 cut(s) 175, 936
Eco130I CCWWGG 2 cut(s) 589, 966
Eco47III AGCGCT 1 cut(s) 219
Eco57I CTGAAG 3 cut(s) 242, 435, 741
Eco88I CYCGRG 1 cut(s) 840
EcoRII CCWGG 1 cut(s) 381
EcoT14I CCWWGG 2 cut(s) 589, 966
ErhI CCWWGG 2 cut(s) 589, 966
FaeI CATG 4 cut(s) 194, 355, 921, 1095
FatI CATG 4 cut(s) 190, 351, 917, 1091
FauNDI CATATG 1 cut(s) 721
FblI GTMKAC 1 cut(s) 1139
FokI GGATG 1 cut(s) 802
FspBI CTAG 3 cut(s) 549, 884, 947
GlaI GCGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 1166
GsuI CTGGAG 3 cut(s) 447, 496, 1071
HaeII RGCGCY 1 cut(s) 221
HaeIII GGCC 4 cut(s) 177, 228, 911, 938
HapII CCGG 3 cut(s) 178, 537, 841
HhaI GCGC 1 cut(s) 220
Hin1II CATG 4 cut(s) 194, 355, 921, 1095
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HindIII AAGCTT 1 cut(s) 876
HinfI GANTC 2 cut(s) 644, 784
HpaII CCGG 3 cut(s) 178, 537, 841
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 3 cut(s) 926, 1005, 1140
Hpy188I TCNGA 3 cut(s) 87, 215, 243
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 3 cut(s) 926, 1005, 1140
HpyAV CCTTC 5 cut(s) 217, 238, 380, 410, 1127
HpyCH4IV ACGT 2 cut(s) 962, 1001
HpyCH4V TGCA 7 cut(s) 252, 263, 683, 698, 874, 921, 1060
HpyF3I CTNAG 3 cut(s) 240, 503, 569
HpySE526I ACGT 2 cut(s) 962, 1001
Hsp92II CATG 4 cut(s) 194, 355, 921, 1095
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
LmnI GCTCC 6 cut(s) 215, 422, 533, 602, 1027, 1052
MaeI CTAG 3 cut(s) 549, 884, 947
MaeII ACGT 2 cut(s) 962, 1001
MaeIII GTNAC 4 cut(s) 131, 364, 544, 593
MalI GATC 6 cut(s) 23, 489, 837, 972, 1097, 1152
MboI GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
MboII GAAGA 2 cut(s) 316, 334
MfeI CAATTG 1 cut(s) 648
MflI RGATCY 2 cut(s) 21, 970
MhlI GDGCHC 3 cut(s) 210, 631, 1117
MlsI TGGCCA 1 cut(s) 938
MluCI AATT 7 cut(s) 30, 145, 334, 648, 798, 856, 1082
MluNI TGGCCA 1 cut(s) 938
MnlI CCTC 8 cut(s) 249, 413, 434, 712, 922, 977, 1035, 1121
Mox20I TGGCCA 1 cut(s) 938
MroXI GAANNNNTTC 1 cut(s) 480
MscI TGGCCA 1 cut(s) 938
MseI TTAA 1 cut(s) 141
MslI CAYNNNNRTG 2 cut(s) 326, 350
Msp20I TGGCCA 1 cut(s) 938
MspA1I CMGCKG 1 cut(s) 811
MspI CCGG 3 cut(s) 178, 537, 841
MspR9I CCNGG 4 cut(s) 383, 538, 841, 842
MunI CAATTG 1 cut(s) 648
MvaI CCWGG 1 cut(s) 383
NciI CCSGG 3 cut(s) 538, 841, 842
NdeI CATATG 1 cut(s) 721
NdeII GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
NlaIII CATG 4 cut(s) 194, 355, 921, 1095
NlaIV GGNNCC 4 cut(s) 207, 535, 972, 1114
PdmI GAANNNNTTC 1 cut(s) 480
PfeI GAWTC 2 cut(s) 644, 784
PflMI CCANNNNNTGG 3 cut(s) 55, 980, 1109
PfoI TCCNGGA 1 cut(s) 381
PshBI ATTAAT 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 381
PspFI CCCAGC 1 cut(s) 1162
PspGI CCWGG 1 cut(s) 381
PspN4I GGNNCC 4 cut(s) 207, 535, 972, 1114
PspPI GGNCC 1 cut(s) 226
PstNI CAGNNNCTG 2 cut(s) 752, 1066
PsuI RGATCY 2 cut(s) 21, 970
PvuII CAGCTG 1 cut(s) 811
RsaI GTAC 3 cut(s) 565, 925, 1004
RsaNI GTAC 3 cut(s) 564, 924, 1003
RseI CAYNNNNRTG 2 cut(s) 326, 350
SaqAI TTAA 1 cut(s) 141
Sau3AI GATC 6 cut(s) 21, 487, 835, 970, 1095, 1150
Sau96I GGNCC 1 cut(s) 226
ScrFI CCNGG 4 cut(s) 383, 538, 841, 842
SduI GDGCHC 3 cut(s) 210, 631, 1117
SfcI CTRYAG 1 cut(s) 806
SmaI CCCGGG 1 cut(s) 842
SmiMI CAYNNNNRTG 2 cut(s) 326, 350
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 7 cut(s) 30, 145, 334, 648, 798, 856, 1082
SsiI CCGC 2 cut(s) 126, 908
SspMI CTAG 3 cut(s) 549, 884, 947
StyD4I CCNGG 4 cut(s) 381, 536, 839, 840
StyI CCWWGG 2 cut(s) 589, 966
TaiI ACGT 2 cut(s) 965, 1004
TasI AATT 7 cut(s) 30, 145, 334, 648, 798, 856, 1082
TatI WGTACW 2 cut(s) 563, 923
TauI GCSGC 2 cut(s) 129, 911
TfiI GAWTC 2 cut(s) 644, 784
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 6 cut(s) 46, 333, 588, 936, 948, 1114
TspDTI ATGAA 1 cut(s) 489
TspMI CCCGGG 1 cut(s) 840
TspRI CASTG 6 cut(s) 46, 333, 588, 936, 948, 1114
Van91I CCANNNNNTGG 3 cut(s) 55, 980, 1109
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 3 cut(s) 30, 334, 1082
XmaI CCCGGG 1 cut(s) 840
XmiI GTMKAC 1 cut(s) 1139
XmnI GAANNNNTTC 1 cut(s) 480
XspI CTAG 3 cut(s) 549, 884, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.