Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0012312

Physical Location & Seq

Genomic Coordinates Reverse (-)

29484517 .. 29489215

Gene Structure 4699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG244100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGCAAAGGCTGTAACTACGGGGAATATCCTGGAAGGTGCTGTATCAGTTTATGACATTGCTGAAGGAGGAGCTGGAGATTGGTTTGGAGGCTTCCTATTTACTACTGGACAACAAGCTAATGAAGCTGTTCAAGACCAGTTATCAGCCCTCAGTTTCTCCAGTTTGGCAGTTATTTTTGGTGCCGGGCTTGTTACTAGCCTTTCTCCTTGTACTCTTAGCGTTCTACCACTGACCCTTGGTTACATAGGAGCATTTGGTTCAGGGAAAAGCAGGGCACAGGTTATTGGGGATTCAATTGCGTTCTCATTAGGATTGGCAACTACACTTGCACTCTTAGGCATTGCAGCCTCATTTGCTGGAAAGGCATATGGACAGACAGGGCAGGGATTACCAGTGGCTGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTCCTTGAGATAATTGAACTACAGCTGCCATCCTTTTTTGACAACTTTGATCCCCGGGCTGCTGCTGCTAATTTTCCATCAAGTGTGCAAGCTTATCTAGCTGGACTTACATTTGCTTTAGCGGCCTCTCCATGCAGTACGCCAGTGCTGGCCACTCTGCTAGGATATGTTGCTACGTCCAAGGTAAATTTGAATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

211

Amino Acids

21.23

Weight (kDa)

4.34

Isoelectric Point (pI)

30.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DsbD_TM	PF02683	55 - 206	3.1e-17	Cytochrome C biogenesis protein transmembrane domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54290 AT5G54290
fragaria_vesca	FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica	MD11G1237300.v1.1
prunus_persica	Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis	pycom11g20860
rosa_chinensis	RchiOBHm_Chr5g0035361
rosa_laevigata	RLG00000033620
rosa_multiflora	Rmu_co8507677.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045040
rosa_rugosa	Rorug05G0151400
rosa_samantha	Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana	Rw5G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	182
AciI	CCGC	1 cut(s)	557
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	585
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	2 cut(s)	84, 390
AfaI	GTAC	2 cut(s)	214, 574
AgsI	TTSAA	5 cut(s)	134, 297, 433, 452, 628
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	7 cut(s)	74, 119, 128, 416, 460, 527, 536
AluI	AGCT	7 cut(s)	74, 119, 128, 416, 460, 527, 536
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	401
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	2 cut(s)	558, 585
ApeKI	GCWGC	6 cut(s)	347, 401, 460, 494, 497, 500
ApoI	RAATTY	1 cut(s)	622
Asp700I	GAANNNNTTC	1 cut(s)	129
AsuC2I	CCSGG	3 cut(s)	187, 490, 491
AvaI	CYCGRG	1 cut(s)	489
BaeGI	GKGCMC	1 cut(s)	280
BalI	TGGCCA	1 cut(s)	587
BanI	GGYRCC	1 cut(s)	182
BbvI	GCAGC	6 cut(s)	359, 388, 447, 481, 484, 487
BccI	CCATC	2 cut(s)	472, 520
BciT130I	CCWGG	1 cut(s)	32
BcnI	CCSGG	3 cut(s)	187, 490, 491
BfaI	CTAG	3 cut(s)	198, 533, 596
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	7 cut(s)	348, 402, 461, 495, 498, 501, 558
BlsI	GCNGC	7 cut(s)	349, 403, 462, 496, 499, 502, 559
Bme1390I	CCNGG	4 cut(s)	32, 187, 490, 491
BmeT110I	CYCGRG	1 cut(s)	489
BmiI	GGNNCC	1 cut(s)	184
BmrFI	CCNGG	4 cut(s)	32, 187, 490, 491
BpmI	CTGGAG	2 cut(s)	96, 145
BpuEI	CTTGAG	1 cut(s)	461
BpuMI	CCSGG	3 cut(s)	187, 490, 491
BsaJI	CCNNGG	4 cut(s)	238, 488, 489, 615
Bse1I	ACTGG	5 cut(s)	112, 139, 162, 395, 578
Bse3DI	GCAATG	2 cut(s)	57, 342
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	4 cut(s)	238, 488, 489, 615
BseGI	GGATG	1 cut(s)	464
BseMI	GCAATG	2 cut(s)	57, 342
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	5 cut(s)	112, 139, 162, 395, 578
BseRI	GAGGAG	1 cut(s)	84
BseSI	GKGCMC	1 cut(s)	280
BseXI	GCAGC	6 cut(s)	359, 388, 447, 481, 484, 487
BshFI	GGCC	2 cut(s)	560, 587
BshNI	GGYRCC	1 cut(s)	182
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	186, 490
BsnI	GGCC	2 cut(s)	560, 587
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	280
Bsp143I	GATC	1 cut(s)	484
BspACI	CCGC	1 cut(s)	557
BspANI	GGCC	2 cut(s)	560, 587
BspCNI	CTCAG	1 cut(s)	165
BspLI	GGNNCC	1 cut(s)	184
BspPI	GGATC	1 cut(s)	479
BspT107I	GGYRCC	1 cut(s)	182
BsrDI	GCAATG	2 cut(s)	57, 342
BsrI	ACTGG	5 cut(s)	112, 139, 162, 395, 578
BssECI	CCNNGG	4 cut(s)	238, 488, 489, 615
BssMI	GATC	1 cut(s)	484
BssT1I	CCWWGG	2 cut(s)	238, 615
Bst2UI	CCWGG	1 cut(s)	32
BstC8I	GCNNGC	2 cut(s)	525, 585
BstDEI	CTNAG	3 cut(s)	152, 218, 337
BstF5I	GGATG	1 cut(s)	464
BstKTI	GATC	1 cut(s)	487
BstMBI	GATC	1 cut(s)	484
BstMWI	GCNNNNNNNGC	6 cut(s)	125, 356, 365, 500, 533, 557
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	4 cut(s)	30, 185, 488, 489
BstSFI	CTRYAG	1 cut(s)	455
BstSLI	GKGCMC	1 cut(s)	280
BstV1I	GCAGC	6 cut(s)	359, 388, 447, 481, 484, 487
BsuRI	GGCC	2 cut(s)	560, 587
BtsCI	GGATG	1 cut(s)	464
BtsIMutI	CAGTG	3 cut(s)	230, 402, 585
Cac8I	GCNNGC	2 cut(s)	525, 585
CaiI	CAGNNNCTG	1 cut(s)	401
Cfr9I	CCCGGG	1 cut(s)	489
Csp6I	GTAC	2 cut(s)	213, 573
CviAII	CATG	1 cut(s)	567
CviQI	GTAC	2 cut(s)	213, 573
DdeI	CTNAG	3 cut(s)	152, 218, 337
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
EaeI	YGGCCR	1 cut(s)	585
Eco130I	CCWWGG	2 cut(s)	238, 615
Eco57I	CTGAAG	2 cut(s)	84, 390
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	238, 615
ErhI	CCWWGG	2 cut(s)	238, 615
FaeI	CATG	1 cut(s)	570
FaiI	YATR	7 cut(s)	54, 248, 370, 372, 425, 568, 603
FatI	CATG	1 cut(s)	566
FauNDI	CATATG	1 cut(s)	370
Fnu4HI	GCNGC	7 cut(s)	348, 402, 461, 495, 498, 501, 558
FokI	GGATG	1 cut(s)	451
Fsp4HI	GCNGC	7 cut(s)	348, 402, 461, 495, 498, 501, 558
FspBI	CTAG	3 cut(s)	198, 533, 596
GluI	GCNGC	7 cut(s)	348, 402, 461, 495, 498, 501, 558
GsuI	CTGGAG	2 cut(s)	96, 145
HaeIII	GGCC	2 cut(s)	560, 587
HapII	CCGG	2 cut(s)	186, 490
Hin1II	CATG	1 cut(s)	570
HindIII	AAGCTT	1 cut(s)	525
HinfI	GANTC	2 cut(s)	293, 433
HpaII	CCGG	2 cut(s)	186, 490
Hpy188III	TCNNGA	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	29, 59
HpyCH4IV	ACGT	1 cut(s)	611
HpyCH4V	TGCA	4 cut(s)	332, 347, 523, 570
HpyF10VI	GCNNNNNNNGC	6 cut(s)	125, 356, 365, 500, 533, 557
HpyF3I	CTNAG	3 cut(s)	152, 218, 337
HpySE526I	ACGT	1 cut(s)	611
Hsp92II	CATG	1 cut(s)	570
Kzo9I	GATC	1 cut(s)	484
LmnI	GCTCC	2 cut(s)	71, 251
Lsp1109I	GCAGC	6 cut(s)	359, 388, 447, 481, 484, 487
MaeI	CTAG	3 cut(s)	198, 533, 596
MaeII	ACGT	1 cut(s)	611
MaeIII	GTNAC	3 cut(s)	13, 193, 242
MalI	GATC	1 cut(s)	486
MboI	GATC	1 cut(s)	484
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	1 cut(s)	280
MlsI	TGGCCA	1 cut(s)	587
MluCI	AATT	4 cut(s)	297, 447, 505, 622
MluNI	TGGCCA	1 cut(s)	587
MnlI	CCTC	5 cut(s)	62, 83, 161, 361, 571
Mox20I	TGGCCA	1 cut(s)	587
MroXI	GAANNNNTTC	1 cut(s)	129
MscI	TGGCCA	1 cut(s)	587
Msp20I	TGGCCA	1 cut(s)	587
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	2 cut(s)	186, 490
MspR9I	CCNGG	4 cut(s)	32, 187, 490, 491
MunI	CAATTG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	6 cut(s)	125, 356, 365, 500, 533, 557
NciI	CCSGG	3 cut(s)	187, 490, 491
NdeI	CATATG	1 cut(s)	370
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	1 cut(s)	570
NlaIV	GGNNCC	1 cut(s)	184
PdmI	GAANNNNTTC	1 cut(s)	129
PfeI	GAWTC	2 cut(s)	293, 433
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	7 cut(s)	349, 403, 462, 496, 499, 502, 559
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	401
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	2 cut(s)	214, 574
RsaNI	GTAC	2 cut(s)	213, 573
SatI	GCNGC	7 cut(s)	348, 402, 461, 495, 498, 501, 558
Sau3AI	GATC	1 cut(s)	484
ScrFI	CCNGG	4 cut(s)	32, 187, 490, 491
SduI	GDGCHC	1 cut(s)	280
SfcI	CTRYAG	1 cut(s)	455
SmaI	CCCGGG	1 cut(s)	491
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
Sse9I	AATT	4 cut(s)	297, 447, 505, 622
SsiI	CCGC	1 cut(s)	557
SspMI	CTAG	3 cut(s)	198, 533, 596
StyD4I	CCNGG	4 cut(s)	30, 185, 488, 489
StyI	CCWWGG	2 cut(s)	238, 615
TaiI	ACGT	1 cut(s)	614
TasI	AATT	4 cut(s)	297, 447, 505, 622
TatI	WGTACW	1 cut(s)	212
TauI	GCSGC	1 cut(s)	560
TfiI	GAWTC	2 cut(s)	293, 433
TscAI	CASTG	3 cut(s)	237, 402, 585
TseI	GCWGC	6 cut(s)	347, 401, 460, 494, 497, 500
TspDTI	ATGAA	1 cut(s)	138
TspMI	CCCGGG	1 cut(s)	489
TspRI	CASTG	3 cut(s)	237, 402, 585
XapI	RAATTY	1 cut(s)	622
XmaI	CCCGGG	1 cut(s)	489
XmnI	GAANNNNTTC	1 cut(s)	129
XspI	CTAG	3 cut(s)	198, 533, 596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.