Rw5G022340

Cytochrome c-type biogenesis ccda-like chloroplastic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0012312
Physical Location & Seq
Reverse (-)
30639808 .. 30643864
4057 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G022340.1

Sequence Viewer

Length: 1083 bp
ATGAATTTGGCTATCAACCATTGCGGCAGTTACAGCATTAATAATTCTTTCACCACTTCAAGCTGGAATCGTGGCCGGAAAACTAGTCATGGTAGATATATGGTGCCCATCGGAGAGCTGAAGGGCCATTCTACACCTCAGAATGTTGGCCAAGATTTTGCACCACTGACAAAGAATGATGGAAGCAGCAGCTTTCAAATGAAGACGTTTGTAAATGCCATAGCAGTGGGAAATTTGGTCTTCACAGACGTGGCAAAGGCTGTAACTACGGGGAATATCCTGGAGGGTGCTGTATCAGTTTATGACATTGCTGAAGGAGGAGCTGGAGATTGGTTTGGAGGCTTCCTATTTACTAGTGGACAACAAGCTAATGAAGCTGTTCAAGACCAGTTATCAGCCCTCAGTTTCTCCAGTTTGGCAGTTATTTTTGGTGCCGGGCTTGTTACTAGCCTTTCTCCTTGTACTCTTAGCGTTCTACCACTGACCCTTGGTTACATAGGAGCATTTGGTTCAGGGAAAAGCAAGGCACAGGTTATTGGGGATTCAATTGCGTTCTCATTAGGATTGGCAACTACACTTGCACTCTTAGGCATTGCAGCCTCATTTGCTGGAAAGGCATATGGACAGACAGGGCAGGGATTACCAGTGGCTGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTCCTTGAGATAATTGAACTACAGCTGCCATCCTTTTTTGACAACTTTGATCCCCGGGCTGCTGCTGCTAATTTTCCATCAAGTGTGCAAGCTTATCTAGCTGGACTTACATTTGCTTTAGCGGCCTCTCCATGCAGTACGCCAGTGCTGGCCACTCTGCTAGGATATGTTGCTACGTCCAAGGATCCATTTATTGGAGGCAGCCTACTTTTGACGTACACAACTGGTTATGTTGCTCCTCTACTTCTTGCTGCATCTTTTGCTGGAGCATTGCAGAGCCTGCTTTCTTTTCGCAAATTTTCAGCATGGATCAATCCAATCAGTGGTGCCCTTCTATTGGGAGGGGGAGTGTATACTTTCTTGGATCGGCTTTTCCCAGCTACTACAATGGCAATGTAG

Protein Analysis

360

Amino Acids

37.13

Weight (kDa)

6.27

Isoelectric Point (pI)

28.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_TM PF02683 138 - 319 4.6e-23 Cytochrome C biogenesis protein transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54290 AT5G54290
fragaria_vesca FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica MD11G1237300.v1.1
prunus_persica Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis pycom11g20860
rosa_chinensis RchiOBHm_Chr5g0035361
rosa_laevigata RLG00000033620
rosa_multiflora Rmu_co8507677.1_g000001
rosa_roxburghii Rroxscaffold_1G00045040
rosa_rugosa Rorug05G0151400
rosa_samantha Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana Rw5G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 103, 431, 1010
AccB7I CCANNNNNTGG 2 cut(s) 878, 1007
AccI GTMKAC 1 cut(s) 1037
AciI CCGC 2 cut(s) 24, 806
AclWI GGATC 5 cut(s) 728, 863, 876, 1001, 1056
AcoI YGGCCR 3 cut(s) 73, 148, 834
AcsI RAATTY 3 cut(s) 4, 232, 980
AcuI CTGAAG 3 cut(s) 140, 333, 639
AfaI GTAC 3 cut(s) 463, 823, 902
AfiI CCNNNNNNNGG 3 cut(s) 878, 1007, 1021
AgsI TTSAA 6 cut(s) 60, 197, 383, 546, 682, 701
AhlI ACTAGT 2 cut(s) 83, 353
AjiI CACGTC 1 cut(s) 250
AjnI CCWGG 1 cut(s) 279
AleI CACNNNNGTG 1 cut(s) 248
AlwI GGATC 5 cut(s) 728, 863, 876, 1001, 1056
AlwNI CAGNNNCTG 2 cut(s) 650, 964
Ama87I CYCGRG 1 cut(s) 738
AoxI GGCC 5 cut(s) 73, 124, 148, 807, 834
ApoI RAATTY 3 cut(s) 4, 232, 980
AseI ATTAAT 1 cut(s) 39
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 1 cut(s) 124
AsuC2I CCSGG 3 cut(s) 436, 739, 740
AsuHPI GGTGA 1 cut(s) 43
AvaI CYCGRG 1 cut(s) 738
BaeGI GKGCMC 2 cut(s) 108, 1015
BalI TGGCCA 2 cut(s) 150, 836
BamHI GGATCC 1 cut(s) 868
BanI GGYRCC 3 cut(s) 103, 431, 1010
BbsI GAAGAC 2 cut(s) 209, 232
BccI CCATC 4 cut(s) 116, 173, 721, 769
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 3 cut(s) 436, 739, 740
BcuI ACTAGT 2 cut(s) 83, 353
BfaI CTAG 5 cut(s) 84, 354, 447, 782, 845
BfmI CTRYAG 1 cut(s) 704
Bme1390I CCNGG 4 cut(s) 281, 436, 739, 740
BmeT110I CYCGRG 1 cut(s) 738
BmgBI CACGTC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 124
BmiI GGNNCC 4 cut(s) 105, 433, 870, 1012
BmrFI CCNGG 4 cut(s) 281, 436, 739, 740
BmsI GCATC 1 cut(s) 947
BpiI GAAGAC 2 cut(s) 209, 232
BpmI CTGGAG 4 cut(s) 302, 345, 394, 969
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 3 cut(s) 436, 739, 740
BsaJI CCNNGG 4 cut(s) 487, 737, 738, 864
BsaXI ACNNNNNCTCC 2 cut(s) 1017, 1047
Bsc4I CCNNNNNNNGG 3 cut(s) 878, 1007, 1021
Bse1I ACTGG 5 cut(s) 388, 411, 644, 827, 913
Bse3DI GCAATG 5 cut(s) 19, 306, 591, 953, 1083
BseBI CCWGG 1 cut(s) 281
BseDI CCNNGG 4 cut(s) 487, 737, 738, 864
BseGI GGATG 1 cut(s) 713
BseLI CCNNNNNNNGG 3 cut(s) 878, 1007, 1021
BseMI GCAATG 5 cut(s) 19, 306, 591, 953, 1083
BseMII CTCAG 2 cut(s) 152, 415
BseNI ACTGG 5 cut(s) 388, 411, 644, 827, 913
BseRI GAGGAG 2 cut(s) 333, 912
BseSI GKGCMC 2 cut(s) 108, 1015
BseYI CCCAGC 1 cut(s) 1060
BshFI GGCC 5 cut(s) 75, 126, 150, 809, 836
BshNI GGYRCC 3 cut(s) 103, 431, 1010
BsiHKCI CYCGRG 1 cut(s) 738
BsiSI CCGG 3 cut(s) 76, 435, 739
BslI CCNNNNNNNGG 3 cut(s) 878, 1007, 1021
BsnI GGCC 5 cut(s) 75, 126, 150, 809, 836
BsoBI CYCGRG 1 cut(s) 738
Bsp1286I GDGCHC 2 cut(s) 108, 1015
Bsp143I GATC 4 cut(s) 733, 868, 993, 1048
BspACI CCGC 2 cut(s) 24, 806
BspANI GGCC 5 cut(s) 75, 126, 150, 809, 836
BspCNI CTCAG 2 cut(s) 151, 414
BspLI GGNNCC 4 cut(s) 105, 433, 870, 1012
BspPI GGATC 5 cut(s) 728, 863, 876, 1001, 1056
BspT107I GGYRCC 3 cut(s) 103, 431, 1010
BsrDI GCAATG 5 cut(s) 19, 306, 591, 953, 1083
BsrI ACTGG 5 cut(s) 388, 411, 644, 827, 913
BssECI CCNNGG 4 cut(s) 487, 737, 738, 864
BssMI GATC 4 cut(s) 733, 868, 993, 1048
BssNAI GTATAC 1 cut(s) 1038
BssT1I CCWWGG 2 cut(s) 487, 864
Bst1107I GTATAC 1 cut(s) 1038
Bst2UI CCWGG 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 944, 964
BstC8I GCNNGC 3 cut(s) 774, 834, 965
BstDEI CTNAG 4 cut(s) 138, 401, 467, 586
BstF5I GGATG 1 cut(s) 713
BstKTI GATC 4 cut(s) 736, 871, 996, 1051
BstMBI GATC 4 cut(s) 733, 868, 993, 1048
BstMWI GCNNNNNNNGC 9 cut(s) 33, 374, 605, 614, 749, 782, 806, 944, 964
BstNI CCWGG 1 cut(s) 281
BstSCI CCNGG 4 cut(s) 279, 434, 737, 738
BstSFI CTRYAG 1 cut(s) 704
BstSLI GKGCMC 2 cut(s) 108, 1015
BstV2I GAAGAC 2 cut(s) 209, 232
BstX2I RGATCY 1 cut(s) 868
BstXI CCANNNNNNTGG 1 cut(s) 226
BstYI RGATCY 1 cut(s) 868
BstZ17I GTATAC 1 cut(s) 1038
BsuRI GGCC 5 cut(s) 75, 126, 150, 809, 836
BtrI CACGTC 1 cut(s) 250
BtsCI GGATG 1 cut(s) 713
BtsI GCAGTG 1 cut(s) 231
BtsIMutI CAGTG 6 cut(s) 164, 231, 479, 651, 834, 1012
Cac8I GCNNGC 3 cut(s) 774, 834, 965
CaiI CAGNNNCTG 2 cut(s) 650, 964
Cfr13I GGNCC 1 cut(s) 124
Cfr9I CCCGGG 1 cut(s) 738
Csp6I GTAC 3 cut(s) 462, 822, 901
CviAII CATG 3 cut(s) 89, 816, 990
CviQI GTAC 3 cut(s) 462, 822, 901
DdeI CTNAG 4 cut(s) 138, 401, 467, 586
DpnI GATC 4 cut(s) 735, 870, 995, 1050
DpnII GATC 4 cut(s) 733, 868, 993, 1048
EaeI YGGCCR 3 cut(s) 73, 148, 834
Eco130I CCWWGG 2 cut(s) 487, 864
Eco57I CTGAAG 3 cut(s) 140, 333, 639
Eco88I CYCGRG 1 cut(s) 738
EcoRII CCWGG 1 cut(s) 279
EcoT14I CCWWGG 2 cut(s) 487, 864
ErhI CCWWGG 2 cut(s) 487, 864
FaeI CATG 3 cut(s) 92, 819, 993
FatI CATG 3 cut(s) 88, 815, 989
FauNDI CATATG 1 cut(s) 619
FblI GTMKAC 1 cut(s) 1037
FokI GGATG 1 cut(s) 700
FspBI CTAG 5 cut(s) 84, 354, 447, 782, 845
GsaI CCCAGC 1 cut(s) 1064
GsuI CTGGAG 4 cut(s) 302, 345, 394, 969
HaeIII GGCC 5 cut(s) 75, 126, 150, 809, 836
HapII CCGG 3 cut(s) 76, 435, 739
Hin1II CATG 3 cut(s) 92, 819, 993
HindIII AAGCTT 1 cut(s) 774
HinfI GANTC 3 cut(s) 67, 542, 682
HpaII CCGG 3 cut(s) 76, 435, 739
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 3 cut(s) 359, 903, 1038
Hpy188I TCNGA 2 cut(s) 113, 141
Hpy188III TCNNGA 1 cut(s) 383
Hpy8I GTNNAC 3 cut(s) 359, 903, 1038
HpyAV CCTTC 3 cut(s) 115, 308, 1025
HpyCH4IV ACGT 4 cut(s) 206, 249, 860, 899
HpyCH4V TGCA 7 cut(s) 161, 581, 596, 772, 819, 938, 958
HpyF10VI GCNNNNNNNGC 9 cut(s) 33, 374, 605, 614, 749, 782, 806, 944, 964
HpyF3I CTNAG 4 cut(s) 138, 401, 467, 586
HpySE526I ACGT 4 cut(s) 206, 249, 860, 899
Hsp92II CATG 3 cut(s) 92, 819, 993
Kzo9I GATC 4 cut(s) 733, 868, 993, 1048
LmnI GCTCC 4 cut(s) 320, 500, 925, 950
LweI GCATC 1 cut(s) 947
MaeI CTAG 5 cut(s) 84, 354, 447, 782, 845
MaeII ACGT 4 cut(s) 206, 249, 860, 899
MaeIII GTNAC 4 cut(s) 29, 262, 442, 491
MalI GATC 4 cut(s) 735, 870, 995, 1050
MboI GATC 4 cut(s) 733, 868, 993, 1048
MboII GAAGA 2 cut(s) 214, 232
MfeI CAATTG 1 cut(s) 546
MflI RGATCY 1 cut(s) 868
MhlI GDGCHC 2 cut(s) 108, 1015
MlsI TGGCCA 2 cut(s) 150, 836
MluCI AATT 7 cut(s) 4, 43, 232, 546, 696, 754, 980
MluNI TGGCCA 2 cut(s) 150, 836
Mox20I TGGCCA 2 cut(s) 150, 836
MroXI GAANNNNTTC 1 cut(s) 378
MscI TGGCCA 2 cut(s) 150, 836
MseI TTAA 1 cut(s) 39
MslI CAYNNNNRTG 2 cut(s) 224, 248
Msp20I TGGCCA 2 cut(s) 150, 836
MspA1I CMGCKG 1 cut(s) 709
MspI CCGG 3 cut(s) 76, 435, 739
MspR9I CCNGG 4 cut(s) 281, 436, 739, 740
MunI CAATTG 1 cut(s) 546
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 9 cut(s) 33, 374, 605, 614, 749, 782, 806, 944, 964
NciI CCSGG 3 cut(s) 436, 739, 740
NdeI CATATG 1 cut(s) 619
NdeII GATC 4 cut(s) 733, 868, 993, 1048
NlaIII CATG 3 cut(s) 92, 819, 993
NlaIV GGNNCC 4 cut(s) 105, 433, 870, 1012
OliI CACNNNNGTG 1 cut(s) 248
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 3 cut(s) 67, 542, 682
PflMI CCANNNNNTGG 2 cut(s) 878, 1007
PfoI TCCNGGA 1 cut(s) 279
PshBI ATTAAT 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 279
PspFI CCCAGC 1 cut(s) 1060
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 4 cut(s) 105, 433, 870, 1012
PspPI GGNCC 1 cut(s) 124
PstNI CAGNNNCTG 2 cut(s) 650, 964
PsuI RGATCY 1 cut(s) 868
PvuII CAGCTG 1 cut(s) 709
RsaI GTAC 3 cut(s) 463, 823, 902
RsaNI GTAC 3 cut(s) 462, 822, 901
RseI CAYNNNNRTG 2 cut(s) 224, 248
SaqAI TTAA 1 cut(s) 39
Sau3AI GATC 4 cut(s) 733, 868, 993, 1048
Sau96I GGNCC 1 cut(s) 124
ScrFI CCNGG 4 cut(s) 281, 436, 739, 740
SduI GDGCHC 2 cut(s) 108, 1015
SfaNI GCATC 1 cut(s) 947
SfcI CTRYAG 1 cut(s) 704
SmaI CCCGGG 1 cut(s) 740
SmiMI CAYNNNNRTG 2 cut(s) 224, 248
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SpeI ACTAGT 2 cut(s) 83, 353
Sse9I AATT 7 cut(s) 4, 43, 232, 546, 696, 754, 980
SsiI CCGC 2 cut(s) 24, 806
SspMI CTAG 5 cut(s) 84, 354, 447, 782, 845
StyD4I CCNGG 4 cut(s) 279, 434, 737, 738
StyI CCWWGG 2 cut(s) 487, 864
TaiI ACGT 4 cut(s) 209, 252, 863, 902
TasI AATT 7 cut(s) 4, 43, 232, 546, 696, 754, 980
TatI WGTACW 1 cut(s) 461
TauI GCSGC 2 cut(s) 27, 809
TfiI GAWTC 3 cut(s) 67, 542, 682
Tru1I TTAA 1 cut(s) 39
Tru9I TTAA 1 cut(s) 39
TscAI CASTG 6 cut(s) 171, 231, 486, 651, 834, 1012
TspDTI ATGAA 3 cut(s) 17, 215, 387
TspMI CCCGGG 1 cut(s) 738
TspRI CASTG 6 cut(s) 171, 231, 486, 651, 834, 1012
Van91I CCANNNNNTGG 2 cut(s) 878, 1007
VspI ATTAAT 1 cut(s) 39
XapI RAATTY 3 cut(s) 4, 232, 980
XmaI CCCGGG 1 cut(s) 738
XmiI GTMKAC 1 cut(s) 1037
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 5 cut(s) 84, 354, 447, 782, 845
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.