Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012312

Physical Location & Seq

Genomic Coordinates Forward (+)

24020360 .. 24024370

Gene Structure 4011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g20860.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGCAGATGAATTTGGCTATCAACAATTGCGGCAGTTATGGAATTAATCCTTTCACAATTTCAAGCTGCAATGGTGGCCAGAAAATCAGTCACAGTAAAAAATATATGGTGCCCAGCAGAATGCTGAAGGGACCTGCTTCTACTTCTACACCTCAGGATGCTTGCCAAGATTCTGCATCATTGGCAAAGACTGATAGAAGCAGCAGCACCAGCAGCTTCCCAATTAAGACTTTTGTAAATTCCATGGCAGCGGCGAATTTGGTCTTTGCCGACTTGGCAAAGGCTAGCACGGAGAAAATGTTGGACGGTGCTGTTTCAGTATATACCTTGGCTGATGGAGGCCCCGGAGAATGGTTTGGAGGCTTCCTATTTTCTGCTGGACAAGATGCTAATGAAGCTGTTCAAGACCAGCTATCAGCCCTCAGTTTCTCTAGTTTGGCAGTTATCTTTGGGGCTGGGCTTGTGACCAGCCTTTCTCCTTGTACTCTTAGCGTTTTACCGCTGACCCTAGGTTACATAGGAGCATTTGGCTCAGGGAAAAGCAAGGCAGAGGTTCTTGGGAATTCAATTGCGTTCTCCTTAGGATTGGCAACTACACTTGCACTCTTAGGCATAGGAGCCTCATTTGCTGGAAAGGCATATGGACAGACAGGGCAGGGGTTACCTTTGACTGCTTCAGGTTTAGCTATTATTATGGGCCTGAATCTCCTTGAGGTAATTGAACTACAGCTCCCCTCATTTTTTAGTAATTTTGATCCCCGGGCTGCTGCTGCTAATTTCCCTTCAAGTGTACAAGCATATCTAGCTGGGCTTACATTTGCTTTAGCTGCCTCGCCATGCAGTACGCCAGTGCTGGCCACTCTGCTTGGATATGTTGCTACGTCTAAGAATCCAGTGATAGGAGGCAGCTTACTTTTGACATACACAAGTGGTTATGTTGCTCCTTTACTTCTTGCTGCTTCTTTTGCTGGAGCACTGCAGAGCCTACTTTCATTTCGCAAATTTTCAGCATGGATAAACCCAATCAGCGGCGCACTTCTGTTAGGAGGGGGTGTGTATACTTTCTTGGATAGGCTTTTCCCAGTTACAATGGCAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

367

Amino Acids

37.51

Weight (kDa)

8.21

Isoelectric Point (pI)

32.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54290 AT5G54290
fragaria_vesca	FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica	MD11G1237300.v1.1
prunus_persica	Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis	pycom11g20860
rosa_chinensis	RchiOBHm_Chr5g0035361
rosa_laevigata	RLG00000033620
rosa_multiflora	Rmu_co8507677.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045040
rosa_rugosa	Rorug05G0151400
rosa_samantha	Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana	Rw5G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	142
AccB1I	GGYRCC	1 cut(s)	109
AccI	GTMKAC	1 cut(s)	1058
AciI	CCGC	4 cut(s)	30, 251, 500, 1029
AclWI	GGATC	1 cut(s)	749
AcoI	YGGCCR	2 cut(s)	76, 855
AcsI	RAATTY	5 cut(s)	10, 238, 256, 562, 1001
AcuI	CTGAAG	2 cut(s)	146, 660
AfaI	GTAC	3 cut(s)	484, 792, 844
AfiI	CCNNNNNNNGG	3 cut(s)	351, 899, 1028
AgsI	TTSAA	5 cut(s)	63, 404, 567, 722, 786
AloI	GAACNNNNNNTCC	2 cut(s)	714, 746
AluBI	AGCT	9 cut(s)	66, 216, 398, 412, 686, 730, 806, 827, 909
AluI	AGCT	9 cut(s)	66, 216, 398, 412, 686, 730, 806, 827, 909
Alw21I	GWGCWC	1 cut(s)	976
AlwI	GGATC	1 cut(s)	749
Ama87I	CYCGRG	1 cut(s)	759
AoxI	GGCC	4 cut(s)	76, 340, 697, 855
ApoI	RAATTY	5 cut(s)	10, 238, 256, 562, 1001
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	399
AspA2I	CCTAGG	1 cut(s)	508
AspLEI	GCGC	1 cut(s)	1034
AspS9I	GGNCC	3 cut(s)	131, 341, 697
AsuC2I	CCSGG	3 cut(s)	345, 760, 761
AsuNHI	GCTAGC	1 cut(s)	284
AvaI	CYCGRG	1 cut(s)	759
AvaII	GGWCC	1 cut(s)	131
AvrII	CCTAGG	1 cut(s)	508
AxyI	CCTNAGG	2 cut(s)	153, 580
BaeGI	GKGCMC	1 cut(s)	114
BalI	TGGCCA	2 cut(s)	78, 857
BanI	GGYRCC	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	976
BccI	CCATC	1 cut(s)	329
BcnI	CCSGG	3 cut(s)	345, 760, 761
BfaI	CTAG	4 cut(s)	285, 432, 509, 803
BfmI	CTRYAG	2 cut(s)	725, 977
BfuAI	ACCTGC	1 cut(s)	142
BglI	GCCNNNNNGGC	1 cut(s)	275
BlnI	CCTAGG	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	345, 760, 761
Bme18I	GGWCC	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	759
BmgT120I	GGNCC	3 cut(s)	131, 341, 697
BmiI	GGNNCC	4 cut(s)	111, 132, 343, 619
BmrFI	CCNGG	3 cut(s)	345, 760, 761
BmrI	ACTGGG	1 cut(s)	1076
BmsI	GCATC	3 cut(s)	148, 185, 376
BmtI	GCTAGC	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	1076
BpmI	CTGGAG	1 cut(s)	990
Bpu10I	CCTNAGC	1 cut(s)	532
BpuEI	CTTGAG	1 cut(s)	731
BpuMI	CCSGG	3 cut(s)	345, 760, 761
BsaJI	CCNNGG	6 cut(s)	243, 327, 343, 508, 758, 759
BsaXI	ACNNNNNCTCC	6 cut(s)	284, 314, 714, 744, 1038, 1068
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 899, 1028
Bse1I	ACTGG	3 cut(s)	848, 893, 1082
Bse21I	CCTNAGG	2 cut(s)	153, 580
Bse3DI	GCAATG	2 cut(s)	76, 1101
BseDI	CCNNGG	6 cut(s)	243, 327, 343, 508, 758, 759
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	3 cut(s)	351, 899, 1028
BseMI	GCAATG	2 cut(s)	76, 1101
BseMII	CTCAG	3 cut(s)	167, 436, 546
BseNI	ACTGG	3 cut(s)	848, 893, 1082
BseSI	GKGCMC	1 cut(s)	114
BseYI	CCCAGC	3 cut(s)	113, 455, 806
BshFI	GGCC	4 cut(s)	78, 342, 699, 857
BshNI	GGYRCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	1 cut(s)	759
BsiSI	CCGG	2 cut(s)	345, 760
BslFI	GGGAC	1 cut(s)	144
BslI	CCNNNNNNNGG	3 cut(s)	351, 899, 1028
BsmFI	GGGAC	1 cut(s)	144
BsmI	GAATGC	1 cut(s)	126
BsnI	GGCC	4 cut(s)	78, 342, 699, 857
BsoBI	CYCGRG	1 cut(s)	759
Bsp1286I	GDGCHC	2 cut(s)	114, 976
Bsp1407I	TGTACA	1 cut(s)	790
Bsp143I	GATC	1 cut(s)	754
Bsp19I	CCATGG	1 cut(s)	243
BspACI	CCGC	4 cut(s)	30, 251, 500, 1029
BspANI	GGCC	4 cut(s)	78, 342, 699, 857
BspCNI	CTCAG	3 cut(s)	166, 435, 545
BspLI	GGNNCC	4 cut(s)	111, 132, 343, 619
BspMAI	CTGCAG	1 cut(s)	981
BspMI	ACCTGC	1 cut(s)	142
BspOI	GCTAGC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	749
BspT107I	GGYRCC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	76, 1101
BsrGI	TGTACA	1 cut(s)	790
BsrI	ACTGG	3 cut(s)	848, 893, 1082
BssECI	CCNNGG	6 cut(s)	243, 327, 343, 508, 758, 759
BssMI	GATC	1 cut(s)	754
BssNAI	GTATAC	1 cut(s)	1059
BssT1I	CCWWGG	3 cut(s)	243, 327, 508
Bst1107I	GTATAC	1 cut(s)	1059
Bst4CI	ACNGT	2 cut(s)	95, 308
BstAUI	TGTACA	1 cut(s)	790
BstC8I	GCNNGC	3 cut(s)	163, 286, 855
BstDEI	CTNAG	7 cut(s)	153, 422, 488, 532, 580, 607, 885
BstDSI	CCRYGG	1 cut(s)	243
BstEII	GGTNACC	1 cut(s)	660
BstF5I	GGATG	1 cut(s)	163
BstHHI	GCGC	1 cut(s)	1034
BstKTI	GATC	1 cut(s)	757
BstMBI	GATC	1 cut(s)	754
BstPI	GGTNACC	1 cut(s)	660
BstSCI	CCNGG	3 cut(s)	343, 758, 759
BstSFI	CTRYAG	2 cut(s)	725, 977
BstSLI	GKGCMC	1 cut(s)	114
BstZ17I	GTATAC	1 cut(s)	1059
Bsu36I	CCTNAGG	2 cut(s)	153, 580
BsuRI	GGCC	4 cut(s)	78, 342, 699, 857
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	163
BtsI	GCAGTG	1 cut(s)	974
BtsIMutI	CAGTG	3 cut(s)	855, 900, 974
BveI	ACCTGC	1 cut(s)	142
Cac8I	GCNNGC	3 cut(s)	163, 286, 855
CfoI	GCGC	1 cut(s)	1034
Cfr13I	GGNCC	3 cut(s)	131, 341, 697
Cfr9I	CCCGGG	1 cut(s)	759
Csp6I	GTAC	3 cut(s)	483, 791, 843
CspCI	CAANNNNNGTGG	2 cut(s)	847, 882
CviAII	CATG	3 cut(s)	244, 837, 1011
CviQI	GTAC	3 cut(s)	483, 791, 843
DdeI	CTNAG	7 cut(s)	153, 422, 488, 532, 580, 607, 885
DpnI	GATC	1 cut(s)	756
DpnII	GATC	1 cut(s)	754
EaeI	YGGCCR	2 cut(s)	76, 855
Eco130I	CCWWGG	3 cut(s)	243, 327, 508
Eco47I	GGWCC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	146, 660
Eco81I	CCTNAGG	2 cut(s)	153, 580
Eco88I	CYCGRG	1 cut(s)	759
Eco91I	GGTNACC	1 cut(s)	660
EcoO109I	RGGNCCY	2 cut(s)	131, 341
EcoO65I	GGTNACC	1 cut(s)	660
EcoRI	GAATTC	1 cut(s)	562
EcoT14I	CCWWGG	3 cut(s)	243, 327, 508
ErhI	CCWWGG	3 cut(s)	243, 327, 508
FaeI	CATG	3 cut(s)	247, 840, 1014
FaqI	GGGAC	1 cut(s)	144
FatI	CATG	3 cut(s)	243, 836, 1010
FauNDI	CATATG	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	1058
FokI	GGATG	1 cut(s)	170
FspBI	CTAG	4 cut(s)	285, 432, 509, 803
GlaI	GCGC	1 cut(s)	1033
GsaI	CCCAGC	3 cut(s)	117, 459, 810
GsuI	CTGGAG	1 cut(s)	990
HaeIII	GGCC	4 cut(s)	78, 342, 699, 857
HapII	CCGG	2 cut(s)	345, 760
HhaI	GCGC	1 cut(s)	1034
Hin1II	CATG	3 cut(s)	247, 840, 1014
Hin6I	GCGC	1 cut(s)	1032
HinP1I	GCGC	1 cut(s)	1032
HinfI	GANTC	3 cut(s)	170, 703, 889
HpaII	CCGG	2 cut(s)	345, 760
Hpy166II	GTNNAC	2 cut(s)	791, 1059
Hpy188III	TCNNGA	2 cut(s)	155, 404
Hpy8I	GTNNAC	2 cut(s)	791, 1059
HpyAV	CCTTC	2 cut(s)	121, 792
HpyCH4III	ACNGT	2 cut(s)	95, 308
HpyCH4IV	ACGT	1 cut(s)	881
HpyCH4V	TGCA	6 cut(s)	4, 69, 176, 602, 840, 979
HpyF3I	CTNAG	7 cut(s)	153, 422, 488, 532, 580, 607, 885
HpySE526I	ACGT	1 cut(s)	881
Hsp92II	CATG	3 cut(s)	247, 840, 1014
HspAI	GCGC	1 cut(s)	1032
Kzo9I	GATC	1 cut(s)	754
LmnI	GCTCC	5 cut(s)	521, 617, 735, 946, 971
LweI	GCATC	3 cut(s)	148, 185, 376
MaeI	CTAG	4 cut(s)	285, 432, 509, 803
MaeII	ACGT	1 cut(s)	881
MaeIII	GTNAC	5 cut(s)	89, 463, 512, 660, 1084
MalI	GATC	1 cut(s)	756
MboI	GATC	1 cut(s)	754
MfeI	CAATTG	2 cut(s)	25, 567
MhlI	GDGCHC	2 cut(s)	114, 976
MlsI	TGGCCA	2 cut(s)	78, 857
MluNI	TGGCCA	2 cut(s)	78, 857
MmeI	TCCRAC	1 cut(s)	282
Mox20I	TGGCCA	2 cut(s)	78, 857
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	2 cut(s)	78, 857
MseI	TTAA	2 cut(s)	45, 225
Msp20I	TGGCCA	2 cut(s)	78, 857
MspA1I	CMGCKG	3 cut(s)	251, 502, 1029
MspI	CCGG	2 cut(s)	345, 760
MspR9I	CCNGG	3 cut(s)	345, 760, 761
MunI	CAATTG	2 cut(s)	25, 567
Mva1269I	GAATGC	1 cut(s)	126
NciI	CCSGG	3 cut(s)	345, 760, 761
NcoI	CCATGG	1 cut(s)	243
NdeI	CATATG	1 cut(s)	640
NdeII	GATC	1 cut(s)	754
NheI	GCTAGC	1 cut(s)	284
NlaIII	CATG	3 cut(s)	247, 840, 1014
NlaIV	GGNNCC	4 cut(s)	111, 132, 343, 619
NmuCI	GTSAC	2 cut(s)	89, 463
PctI	GAATGC	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	3 cut(s)	170, 703, 889
PpuMI	RGGWCCY	1 cut(s)	131
PshBI	ATTAAT	1 cut(s)	45
Psp5II	RGGWCCY	1 cut(s)	131
PspEI	GGTNACC	1 cut(s)	660
PspFI	CCCAGC	3 cut(s)	113, 455, 806
PspN4I	GGNNCC	4 cut(s)	111, 132, 343, 619
PspPI	GGNCC	3 cut(s)	131, 341, 697
PspPPI	RGGWCCY	1 cut(s)	131
PstI	CTGCAG	1 cut(s)	981
RsaI	GTAC	3 cut(s)	484, 792, 844
RsaNI	GTAC	3 cut(s)	483, 791, 843
SaqAI	TTAA	2 cut(s)	45, 225
Sau3AI	GATC	1 cut(s)	754
Sau96I	GGNCC	3 cut(s)	131, 341, 697
ScrFI	CCNGG	3 cut(s)	345, 760, 761
SduI	GDGCHC	2 cut(s)	114, 976
SfaNI	GCATC	3 cut(s)	148, 185, 376
SfcI	CTRYAG	2 cut(s)	725, 977
SinI	GGWCC	1 cut(s)	131
SmaI	CCCGGG	1 cut(s)	761
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SsiI	CCGC	4 cut(s)	30, 251, 500, 1029
SspMI	CTAG	4 cut(s)	285, 432, 509, 803
StyD4I	CCNGG	3 cut(s)	343, 758, 759
StyI	CCWWGG	3 cut(s)	243, 327, 508
TaaI	ACNGT	2 cut(s)	95, 308
TaiI	ACGT	1 cut(s)	884
TatI	WGTACW	2 cut(s)	482, 790
TauI	GCSGC	3 cut(s)	33, 254, 1032
TfiI	GAWTC	3 cut(s)	170, 703, 889
Tru1I	TTAA	2 cut(s)	45, 225
Tru9I	TTAA	2 cut(s)	45, 225
TscAI	CASTG	3 cut(s)	855, 900, 981
TseFI	GTSAC	2 cut(s)	89, 463
Tsp45I	GTSAC	2 cut(s)	89, 463
TspDTI	ATGAA	3 cut(s)	23, 408, 981
TspGWI	ACGGA	1 cut(s)	305
TspMI	CCCGGG	1 cut(s)	759
TspRI	CASTG	3 cut(s)	855, 900, 981
VpaK11BI	GGWCC	1 cut(s)	131
VspI	ATTAAT	1 cut(s)	45
XapI	RAATTY	5 cut(s)	10, 238, 256, 562, 1001
XmaI	CCCGGG	1 cut(s)	759
XmaJI	CCTAGG	1 cut(s)	508
XmiI	GTMKAC	1 cut(s)	1058
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	4 cut(s)	285, 432, 509, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.