Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8507677.1

Orthogroup ID

OG0012312

Physical Location & Seq

Genomic Coordinates Forward (+)

41 .. 2844

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8507677.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

atgaatttggctatcaaccattgcggcagttacagcattaacaattctttcaccacttcaagctggaagcgtggccggaaaactagtcatggtagatatacggtgcccatcggagagctgaagggccattctacacctcagaatgttggccaagattttgcaccactggcaaagaatgatggaagcagcagctttcaaatgaagacgtttgtaaatgccatagcagtgggaaatttggtcttcacagacatggcaaaggctgtaactactgggaatatcctggaaggtgctgtatcagtttatgacattgctgaaggaggagctggagattggtttggaggcttcctatttactactggacaacaagctaatgaagctgttcaagaccagttatcagccctcagtttctccagtttggcagttatttttggtgctgggcttgttactagcctttctccttgtactcttagcgttctaccactgacccttggttacataggagcatttggttcagggaaaagcagggcacaggttattggggattcaattgcgttctcattaggattggcaactacacttgcactcttaggcattgcagcctcatttgctggaaaggcatatggacagacagggcagggattaccagtggctgcttcaggtttagctattgttatgggcttgaatctccttgagataattgaactacagctgccatccttttttgacaactttgatccccgggctgctgctgctaattttccatcaagtgtgcaagcttatctagctggacttacatttgctttagcagcctctccatgcagtacgccagtgctggccactctgctaggatatgttgctacgtccaaggtaaatttgaatgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009536 GO:0009579 GO:0009987 GO:0010190 GO:0016020 GO:0016043 GO:0017004 GO:0022607 GO:0031976 GO:0031984 GO:0034357 GO:0034622 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DsbD

Protein Analysis

294

Amino Acids

30.22

Weight (kDa)

6.27

Isoelectric Point (pI)

27.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012312)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54290 AT5G54290
fragaria_vesca	FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica	MD11G1237300.v1.1
prunus_persica	Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis	pycom11g20860
rosa_chinensis	RchiOBHm_Chr5g0035361
rosa_laevigata	RLG00000033620
rosa_multiflora	Rmu_co8507677.1_g000001
rosa_roxburghii	Rroxscaffold_1G00045040
rosa_rugosa	Rorug05G0151400
rosa_samantha	Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana	Rw5G022340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	103
AciI	CCGC	1 cut(s)	24
AclWI	GGATC	1 cut(s)	728
AcoI	YGGCCR	3 cut(s)	73, 148, 834
AcsI	RAATTY	3 cut(s)	4, 232, 871
AcuI	CTGAAG	3 cut(s)	140, 333, 639
AfaI	GTAC	2 cut(s)	463, 823
AgsI	TTSAA	7 cut(s)	60, 197, 383, 546, 682, 701, 877
AhlI	ACTAGT	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	279
AlwI	GGATC	1 cut(s)	728
AlwNI	CAGNNNCTG	1 cut(s)	650
Ama87I	CYCGRG	1 cut(s)	738
AoxI	GGCC	4 cut(s)	73, 124, 148, 834
ApeKI	GCWGC	9 cut(s)	186, 189, 596, 650, 709, 743, 746, 749, 806
ApoI	RAATTY	3 cut(s)	4, 232, 871
Asp700I	GAANNNNTTC	1 cut(s)	378
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	2 cut(s)	739, 740
AsuHPI	GGTGA	1 cut(s)	43
AvaI	CYCGRG	1 cut(s)	738
BaeGI	GKGCMC	2 cut(s)	108, 529
BalI	TGGCCA	2 cut(s)	150, 836
BanI	GGYRCC	1 cut(s)	103
BbsI	GAAGAC	2 cut(s)	209, 232
BbvI	GCAGC	9 cut(s)	198, 201, 608, 637, 696, 730, 733, 736, 818
BccI	CCATC	4 cut(s)	116, 173, 721, 769
BciT130I	CCWGG	1 cut(s)	281
BcnI	CCSGG	2 cut(s)	739, 740
BcuI	ACTAGT	1 cut(s)	83
BfaI	CTAG	4 cut(s)	84, 447, 782, 845
BfmI	CTRYAG	1 cut(s)	704
Bme1390I	CCNGG	3 cut(s)	281, 739, 740
BmeT110I	CYCGRG	1 cut(s)	738
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	105
BmrFI	CCNGG	3 cut(s)	281, 739, 740
BmrI	ACTGGG	1 cut(s)	279
BmuI	ACTGGG	1 cut(s)	279
BpiI	GAAGAC	2 cut(s)	209, 232
BpmI	CTGGAG	2 cut(s)	345, 394
BpuEI	CTTGAG	1 cut(s)	710
BpuMI	CCSGG	2 cut(s)	739, 740
BsaJI	CCNNGG	4 cut(s)	487, 737, 738, 864
Bse1I	ACTGG	7 cut(s)	171, 274, 361, 388, 411, 644, 827
Bse3DI	GCAATG	3 cut(s)	19, 306, 591
BseBI	CCWGG	1 cut(s)	281
BseDI	CCNNGG	4 cut(s)	487, 737, 738, 864
BseGI	GGATG	1 cut(s)	713
BseMI	GCAATG	3 cut(s)	19, 306, 591
BseMII	CTCAG	2 cut(s)	152, 415
BseNI	ACTGG	7 cut(s)	171, 274, 361, 388, 411, 644, 827
BseRI	GAGGAG	1 cut(s)	333
BseSI	GKGCMC	2 cut(s)	108, 529
BseXI	GCAGC	9 cut(s)	198, 201, 608, 637, 696, 730, 733, 736, 818
BseYI	CCCAGC	1 cut(s)	434
BshFI	GGCC	4 cut(s)	75, 126, 150, 836
BshNI	GGYRCC	1 cut(s)	103
BsiHKCI	CYCGRG	1 cut(s)	738
BsiSI	CCGG	2 cut(s)	76, 739
BsnI	GGCC	4 cut(s)	75, 126, 150, 836
BsoBI	CYCGRG	1 cut(s)	738
Bsp1286I	GDGCHC	2 cut(s)	108, 529
Bsp143I	GATC	1 cut(s)	733
BspACI	CCGC	1 cut(s)	24
BspANI	GGCC	4 cut(s)	75, 126, 150, 836
BspCNI	CTCAG	2 cut(s)	151, 414
BspLI	GGNNCC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	728
BspT107I	GGYRCC	1 cut(s)	103
BsrDI	GCAATG	3 cut(s)	19, 306, 591
BsrI	ACTGG	7 cut(s)	171, 274, 361, 388, 411, 644, 827
BssECI	CCNNGG	4 cut(s)	487, 737, 738, 864
BssMI	GATC	1 cut(s)	733
BssT1I	CCWWGG	2 cut(s)	487, 864
Bst2UI	CCWGG	1 cut(s)	281
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	774, 834
BstDEI	CTNAG	4 cut(s)	138, 401, 467, 586
BstF5I	GGATG	1 cut(s)	713
BstKTI	GATC	1 cut(s)	736
BstMBI	GATC	1 cut(s)	733
BstMWI	GCNNNNNNNGC	8 cut(s)	33, 167, 374, 605, 614, 749, 782, 806
BstNI	CCWGG	1 cut(s)	281
BstSCI	CCNGG	3 cut(s)	279, 737, 738
BstSFI	CTRYAG	1 cut(s)	704
BstSLI	GKGCMC	2 cut(s)	108, 529
BstV1I	GCAGC	9 cut(s)	198, 201, 608, 637, 696, 730, 733, 736, 818
BstV2I	GAAGAC	2 cut(s)	209, 232
BstXI	CCANNNNNNTGG	1 cut(s)	226
BsuRI	GGCC	4 cut(s)	75, 126, 150, 836
BtsCI	GGATG	1 cut(s)	713
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	5 cut(s)	164, 231, 479, 651, 834
Cac8I	GCNNGC	2 cut(s)	774, 834
CaiI	CAGNNNCTG	1 cut(s)	650
Cfr13I	GGNCC	1 cut(s)	124
Cfr9I	CCCGGG	1 cut(s)	738
Csp6I	GTAC	2 cut(s)	462, 822
CviAII	CATG	3 cut(s)	89, 250, 816
CviQI	GTAC	2 cut(s)	462, 822
DdeI	CTNAG	4 cut(s)	138, 401, 467, 586
DpnI	GATC	1 cut(s)	735
DpnII	GATC	1 cut(s)	733
EaeI	YGGCCR	3 cut(s)	73, 148, 834
Eco130I	CCWWGG	2 cut(s)	487, 864
Eco57I	CTGAAG	3 cut(s)	140, 333, 639
Eco88I	CYCGRG	1 cut(s)	738
EcoRII	CCWGG	1 cut(s)	279
EcoT14I	CCWWGG	2 cut(s)	487, 864
ErhI	CCWWGG	2 cut(s)	487, 864
FaeI	CATG	3 cut(s)	92, 253, 819
FatI	CATG	3 cut(s)	88, 249, 815
FauNDI	CATATG	1 cut(s)	619
FokI	GGATG	1 cut(s)	700
FspBI	CTAG	4 cut(s)	84, 447, 782, 845
GsaI	CCCAGC	1 cut(s)	438
GsuI	CTGGAG	2 cut(s)	345, 394
HaeIII	GGCC	4 cut(s)	75, 126, 150, 836
HapII	CCGG	2 cut(s)	76, 739
Hin1II	CATG	3 cut(s)	92, 253, 819
HindIII	AAGCTT	1 cut(s)	774
HinfI	GANTC	2 cut(s)	542, 682
HpaII	CCGG	2 cut(s)	76, 739
HphI	GGTGA	1 cut(s)	43
Hpy188I	TCNGA	2 cut(s)	113, 141
Hpy188III	TCNNGA	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	115, 278, 308
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4IV	ACGT	2 cut(s)	206, 860
HpyCH4V	TGCA	5 cut(s)	161, 581, 596, 772, 819
HpyF10VI	GCNNNNNNNGC	8 cut(s)	33, 167, 374, 605, 614, 749, 782, 806
HpyF3I	CTNAG	4 cut(s)	138, 401, 467, 586
HpySE526I	ACGT	2 cut(s)	206, 860
Hsp92II	CATG	3 cut(s)	92, 253, 819
Kzo9I	GATC	1 cut(s)	733
LmnI	GCTCC	2 cut(s)	320, 500
Lsp1109I	GCAGC	9 cut(s)	198, 201, 608, 637, 696, 730, 733, 736, 818
MaeI	CTAG	4 cut(s)	84, 447, 782, 845
MaeII	ACGT	2 cut(s)	206, 860
MaeIII	GTNAC	4 cut(s)	29, 262, 442, 491
MalI	GATC	1 cut(s)	735
MboI	GATC	1 cut(s)	733
MboII	GAAGA	2 cut(s)	214, 232
MfeI	CAATTG	1 cut(s)	546
MhlI	GDGCHC	2 cut(s)	108, 529
MlsI	TGGCCA	2 cut(s)	150, 836
MluCI	AATT	7 cut(s)	4, 43, 232, 546, 696, 754, 871
MluNI	TGGCCA	2 cut(s)	150, 836
MnlI	CCTC	6 cut(s)	147, 311, 332, 410, 610, 820
Mox20I	TGGCCA	2 cut(s)	150, 836
MroXI	GAANNNNTTC	1 cut(s)	378
MscI	TGGCCA	2 cut(s)	150, 836
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	2 cut(s)	224, 248
Msp20I	TGGCCA	2 cut(s)	150, 836
MspA1I	CMGCKG	1 cut(s)	709
MspI	CCGG	2 cut(s)	76, 739
MspR9I	CCNGG	3 cut(s)	281, 739, 740
MunI	CAATTG	1 cut(s)	546
MvaI	CCWGG	1 cut(s)	281
MwoI	GCNNNNNNNGC	8 cut(s)	33, 167, 374, 605, 614, 749, 782, 806
NciI	CCSGG	2 cut(s)	739, 740
NdeI	CATATG	1 cut(s)	619
NdeII	GATC	1 cut(s)	733
NlaIII	CATG	3 cut(s)	92, 253, 819
NlaIV	GGNNCC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	378
PfeI	GAWTC	2 cut(s)	542, 682
PfoI	TCCNGGA	1 cut(s)	279
Psp6I	CCWGG	1 cut(s)	279
PspFI	CCCAGC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	279
PspN4I	GGNNCC	1 cut(s)	105
PspPI	GGNCC	1 cut(s)	124
PstNI	CAGNNNCTG	1 cut(s)	650
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	2 cut(s)	463, 823
RsaNI	GTAC	2 cut(s)	462, 822
RseI	CAYNNNNRTG	2 cut(s)	224, 248
SaqAI	TTAA	1 cut(s)	39
Sau3AI	GATC	1 cut(s)	733
Sau96I	GGNCC	1 cut(s)	124
ScrFI	CCNGG	3 cut(s)	281, 739, 740
SduI	GDGCHC	2 cut(s)	108, 529
SfcI	CTRYAG	1 cut(s)	704
SmaI	CCCGGG	1 cut(s)	740
SmiMI	CAYNNNNRTG	2 cut(s)	224, 248
SmlI	CTYRAG	1 cut(s)	689
SmoI	CTYRAG	1 cut(s)	689
SpeI	ACTAGT	1 cut(s)	83
Sse9I	AATT	7 cut(s)	4, 43, 232, 546, 696, 754, 871
SsiI	CCGC	1 cut(s)	24
SspMI	CTAG	4 cut(s)	84, 447, 782, 845
StyD4I	CCNGG	3 cut(s)	279, 737, 738
StyI	CCWWGG	2 cut(s)	487, 864
TaaI	ACNGT	1 cut(s)	103
TaiI	ACGT	2 cut(s)	209, 863
TasI	AATT	7 cut(s)	4, 43, 232, 546, 696, 754, 871
TatI	WGTACW	1 cut(s)	461
TauI	GCSGC	1 cut(s)	27
TfiI	GAWTC	2 cut(s)	542, 682
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	5 cut(s)	171, 231, 486, 651, 834
TseI	GCWGC	9 cut(s)	186, 189, 596, 650, 709, 743, 746, 749, 806
TspDTI	ATGAA	3 cut(s)	17, 215, 387
TspMI	CCCGGG	1 cut(s)	738
TspRI	CASTG	5 cut(s)	171, 231, 486, 651, 834
XapI	RAATTY	3 cut(s)	4, 232, 871
XmaI	CCCGGG	1 cut(s)	738
XmnI	GAANNNNTTC	1 cut(s)	378
XspI	CTAG	4 cut(s)	84, 447, 782, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.