RchiOBHm_Chr5g0035361

Cytochrome c-type biogenesis ccda-like chloroplastic protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0012312
Physical Location & Seq
Reverse (-)
29240772 .. 29245415
4644 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31425

Sequence Viewer

Length: 984 bp
ATGGTGCCCATCGGAGCGCTGAAGGGCCATTCTACATCTCAAGATGTTTGCCCAGATGTTGCACCATTGGCAAAGAATGATGGAAGCAGCAGCTTTCAAATGAGGACATTTGTAAATGCCATAGCAGTGGGAAATTTGGTCTTCACAGATGTGGCAAAGGCTGTAACTACGGGGAATATCCTGGAAGGTGCTGTATCAGTTTATGACATTGCTGAAGGAGGAGCTGGAGATTGGTTTGGAGGCTTCCTATTTACTACTGGACAACAAGCTAATGAAGCTGTTCAAGACCAGTTATCAGCCCTCAGTTTCTCCAGTTTGGCAGTTATTTTTGGTGCCGGGCTTGTTACTAGCCTTTCTCCTTGTACTCTTAGCGTTCTACCACTGACCCTTGGTTACATAGGAGCATTTGGTTCAGGGAAAAGCAGGGCACAGGTTATTGGGGATTCAATTGCGTTCTCATTAGGATTGGCAACTACACTTGCACTCTTAGGCATTGCAGCCTCATTTGCTGGAAAGGCATATGGACAGACAGGGCAGGGATTACCAGTGGCTGCTTCAGGTTTAGCTATTGTTATGGGCTTGAATCTCCTTGAGATAATTGAACTACAGCTGCCATCCTTTTTTGACAACTTTGATCCCCGGGCTGCTGCTGCTAATTTTCCATCAAGTGTGCAAGCTTATCTAGCTGGACTTACATTTGCTTTAGCGGCCTCTCCATGCAGTACGCCAGTGCTGGCCACTCTGCTAGGATATGTTGCTACGTCCAAGGATCCATTTATTGGAGGCAGCCTACTTTTGACGTACACAACTGGTTATGTTGCTCCTCTACTTCTTGCTGCATCTTTTGCTGGAGCATTGCAGAGCCTGCTTTCTTTTCGCAAATTTTCAGCATGGATCAACCCAATCAGTGGTGCCCTTCTATTGGGAGGGGGAGTGTATACTTTCTTGGATCGGCTTTTCCCAGCTACTACAATGGCAATGTAG

Protein Analysis

327

Amino Acids

33.32

Weight (kDa)

4.7

Isoelectric Point (pI)

30.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DsbD_TM PF02683 105 - 286 2.4e-23 Cytochrome C biogenesis protein transmembrane domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012312)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G54290 AT5G54290
fragaria_vesca FvH4_3g20940 FvH4_3g20940 FvH4_3g20940
malus_domestica MD11G1237300.v1.1
prunus_persica Prupe.4G189900_v2.0.a1 Prupe.4G189900_v2.0.a1
pyrus_communis pycom11g20860
rosa_chinensis RchiOBHm_Chr5g0035361
rosa_laevigata RLG00000033620
rosa_multiflora Rmu_co8507677.1_g000001
rosa_roxburghii Rroxscaffold_1G00045040
rosa_rugosa Rorug05G0151400
rosa_samantha Rh5AG244600 Rh5BG244100 Rh5CG275900 Rh5DG253200
rosa_wichuraiana Rw5G022340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 332, 911
AccB7I CCANNNNNTGG 2 cut(s) 779, 908
AccI GTMKAC 1 cut(s) 938
AciI CCGC 1 cut(s) 707
AclWI GGATC 5 cut(s) 629, 764, 777, 902, 957
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 2 cut(s) 133, 881
AcuI CTGAAG 3 cut(s) 41, 234, 540
AfaI GTAC 3 cut(s) 364, 724, 803
AfeI AGCGCT 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 779, 908, 922
AgsI TTSAA 5 cut(s) 98, 284, 447, 583, 602
AjnI CCWGG 1 cut(s) 180
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 9 cut(s) 93, 224, 269, 278, 566, 610, 677, 686, 965
AluI AGCT 9 cut(s) 93, 224, 269, 278, 566, 610, 677, 686, 965
AlwI GGATC 5 cut(s) 629, 764, 777, 902, 957
AlwNI CAGNNNCTG 2 cut(s) 551, 865
Ama87I CYCGRG 1 cut(s) 639
Aor51HI AGCGCT 1 cut(s) 18
AoxI GGCC 3 cut(s) 25, 708, 735
ApoI RAATTY 2 cut(s) 133, 881
Asp700I GAANNNNTTC 1 cut(s) 279
AspLEI GCGC 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 25
AsuC2I CCSGG 3 cut(s) 337, 640, 641
AvaI CYCGRG 1 cut(s) 639
BaeGI GKGCMC 3 cut(s) 9, 430, 916
BalI TGGCCA 1 cut(s) 737
BamHI GGATCC 1 cut(s) 769
BanI GGYRCC 3 cut(s) 4, 332, 911
BbsI GAAGAC 1 cut(s) 133
BccI CCATC 4 cut(s) 17, 74, 622, 670
BciT130I CCWGG 1 cut(s) 182
BcnI CCSGG 3 cut(s) 337, 640, 641
BfaI CTAG 3 cut(s) 348, 683, 746
BfmI CTRYAG 1 cut(s) 605
BfoI RGCGCY 1 cut(s) 20
Bme1390I CCNGG 4 cut(s) 182, 337, 640, 641
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 25
BmiI GGNNCC 4 cut(s) 6, 334, 771, 913
BmrFI CCNGG 4 cut(s) 182, 337, 640, 641
BmsI GCATC 1 cut(s) 848
BpiI GAAGAC 1 cut(s) 133
BpmI CTGGAG 3 cut(s) 246, 295, 870
BpuEI CTTGAG 2 cut(s) 24, 611
BpuMI CCSGG 3 cut(s) 337, 640, 641
BsaJI CCNNGG 4 cut(s) 388, 638, 639, 765
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 3 cut(s) 779, 908, 922
Bse1I ACTGG 6 cut(s) 262, 289, 312, 545, 728, 814
Bse3DI GCAATG 4 cut(s) 207, 492, 854, 984
BseBI CCWGG 1 cut(s) 182
BseDI CCNNGG 4 cut(s) 388, 638, 639, 765
BseGI GGATG 1 cut(s) 614
BseLI CCNNNNNNNGG 3 cut(s) 779, 908, 922
BseMI GCAATG 4 cut(s) 207, 492, 854, 984
BseMII CTCAG 1 cut(s) 316
BseNI ACTGG 6 cut(s) 262, 289, 312, 545, 728, 814
BseRI GAGGAG 2 cut(s) 234, 813
BseSI GKGCMC 3 cut(s) 9, 430, 916
BseYI CCCAGC 1 cut(s) 961
BshFI GGCC 3 cut(s) 27, 710, 737
BshNI GGYRCC 3 cut(s) 4, 332, 911
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 2 cut(s) 336, 640
BslI CCNNNNNNNGG 3 cut(s) 779, 908, 922
BsnI GGCC 3 cut(s) 27, 710, 737
BsoBI CYCGRG 1 cut(s) 639
Bsp1286I GDGCHC 3 cut(s) 9, 430, 916
Bsp143I GATC 4 cut(s) 634, 769, 894, 949
BspACI CCGC 1 cut(s) 707
BspANI GGCC 3 cut(s) 27, 710, 737
BspCNI CTCAG 1 cut(s) 315
BspLI GGNNCC 4 cut(s) 6, 334, 771, 913
BspPI GGATC 5 cut(s) 629, 764, 777, 902, 957
BspT107I GGYRCC 3 cut(s) 4, 332, 911
BsrDI GCAATG 4 cut(s) 207, 492, 854, 984
BsrI ACTGG 6 cut(s) 262, 289, 312, 545, 728, 814
BssECI CCNNGG 4 cut(s) 388, 638, 639, 765
BssMI GATC 4 cut(s) 634, 769, 894, 949
BssNAI GTATAC 1 cut(s) 939
BssT1I CCWWGG 2 cut(s) 388, 765
Bst1107I GTATAC 1 cut(s) 939
Bst2UI CCWGG 1 cut(s) 182
BstAPI GCANNNNNTGC 2 cut(s) 845, 865
BstC8I GCNNGC 3 cut(s) 675, 735, 866
BstDEI CTNAG 3 cut(s) 302, 368, 487
BstF5I GGATG 1 cut(s) 614
BstH2I RGCGCY 1 cut(s) 20
BstHHI GCGC 1 cut(s) 19
BstKTI GATC 4 cut(s) 637, 772, 897, 952
BstMBI GATC 4 cut(s) 634, 769, 894, 949
BstMWI GCNNNNNNNGC 9 cut(s) 68, 275, 506, 515, 650, 683, 707, 845, 865
BstNI CCWGG 1 cut(s) 182
BstSCI CCNGG 4 cut(s) 180, 335, 638, 639
BstSFI CTRYAG 1 cut(s) 605
BstSLI GKGCMC 3 cut(s) 9, 430, 916
BstV2I GAAGAC 1 cut(s) 133
BstX2I RGATCY 1 cut(s) 769
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 1 cut(s) 769
BstZ17I GTATAC 1 cut(s) 939
BsuRI GGCC 3 cut(s) 27, 710, 737
BtsCI GGATG 1 cut(s) 614
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 5 cut(s) 132, 380, 552, 735, 913
Cac8I GCNNGC 3 cut(s) 675, 735, 866
CaiI CAGNNNCTG 2 cut(s) 551, 865
CfoI GCGC 1 cut(s) 19
Cfr13I GGNCC 1 cut(s) 25
Cfr9I CCCGGG 1 cut(s) 639
Csp6I GTAC 3 cut(s) 363, 723, 802
CviAII CATG 2 cut(s) 717, 891
CviQI GTAC 3 cut(s) 363, 723, 802
DdeI CTNAG 3 cut(s) 302, 368, 487
DpnI GATC 4 cut(s) 636, 771, 896, 951
DpnII GATC 4 cut(s) 634, 769, 894, 949
EaeI YGGCCR 1 cut(s) 735
Eco130I CCWWGG 2 cut(s) 388, 765
Eco47III AGCGCT 1 cut(s) 18
Eco57I CTGAAG 3 cut(s) 41, 234, 540
Eco88I CYCGRG 1 cut(s) 639
EcoRII CCWGG 1 cut(s) 180
EcoT14I CCWWGG 2 cut(s) 388, 765
ErhI CCWWGG 2 cut(s) 388, 765
FaeI CATG 2 cut(s) 720, 894
FatI CATG 2 cut(s) 716, 890
FauNDI CATATG 1 cut(s) 520
FblI GTMKAC 1 cut(s) 938
FokI GGATG 1 cut(s) 601
FspBI CTAG 3 cut(s) 348, 683, 746
GlaI GCGC 1 cut(s) 18
GsaI CCCAGC 1 cut(s) 965
GsuI CTGGAG 3 cut(s) 246, 295, 870
HaeII RGCGCY 1 cut(s) 20
HaeIII GGCC 3 cut(s) 27, 710, 737
HapII CCGG 2 cut(s) 336, 640
HhaI GCGC 1 cut(s) 19
Hin1II CATG 2 cut(s) 720, 894
Hin6I GCGC 1 cut(s) 17
HinP1I GCGC 1 cut(s) 17
HindIII AAGCTT 1 cut(s) 675
HinfI GANTC 2 cut(s) 443, 583
HpaII CCGG 2 cut(s) 336, 640
Hpy166II GTNNAC 2 cut(s) 804, 939
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 2 cut(s) 41, 284
Hpy8I GTNNAC 2 cut(s) 804, 939
HpyAV CCTTC 4 cut(s) 16, 179, 209, 926
HpyCH4IV ACGT 2 cut(s) 761, 800
HpyCH4V TGCA 7 cut(s) 62, 482, 497, 673, 720, 839, 859
HpyF10VI GCNNNNNNNGC 9 cut(s) 68, 275, 506, 515, 650, 683, 707, 845, 865
HpyF3I CTNAG 3 cut(s) 302, 368, 487
HpySE526I ACGT 2 cut(s) 761, 800
Hsp92II CATG 2 cut(s) 720, 894
HspAI GCGC 1 cut(s) 17
Kzo9I GATC 4 cut(s) 634, 769, 894, 949
LmnI GCTCC 5 cut(s) 14, 221, 401, 826, 851
LweI GCATC 1 cut(s) 848
MaeI CTAG 3 cut(s) 348, 683, 746
MaeII ACGT 2 cut(s) 761, 800
MaeIII GTNAC 3 cut(s) 163, 343, 392
MalI GATC 4 cut(s) 636, 771, 896, 951
MboI GATC 4 cut(s) 634, 769, 894, 949
MboII GAAGA 1 cut(s) 133
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 769
MhlI GDGCHC 3 cut(s) 9, 430, 916
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 5 cut(s) 133, 447, 597, 655, 881
MluNI TGGCCA 1 cut(s) 737
MnlI CCTC 9 cut(s) 96, 212, 233, 311, 511, 721, 776, 834, 920
Mox20I TGGCCA 1 cut(s) 737
MroXI GAANNNNTTC 1 cut(s) 279
MscI TGGCCA 1 cut(s) 737
MslI CAYNNNNRTG 2 cut(s) 125, 149
Msp20I TGGCCA 1 cut(s) 737
MspA1I CMGCKG 1 cut(s) 610
MspI CCGG 2 cut(s) 336, 640
MspR9I CCNGG 4 cut(s) 182, 337, 640, 641
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 182
MwoI GCNNNNNNNGC 9 cut(s) 68, 275, 506, 515, 650, 683, 707, 845, 865
NciI CCSGG 3 cut(s) 337, 640, 641
NdeI CATATG 1 cut(s) 520
NdeII GATC 4 cut(s) 634, 769, 894, 949
NlaIII CATG 2 cut(s) 720, 894
NlaIV GGNNCC 4 cut(s) 6, 334, 771, 913
OliI CACNNNNGTG 1 cut(s) 149
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 2 cut(s) 443, 583
PflMI CCANNNNNTGG 2 cut(s) 779, 908
PfoI TCCNGGA 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 180
PspFI CCCAGC 1 cut(s) 961
PspGI CCWGG 1 cut(s) 180
PspN4I GGNNCC 4 cut(s) 6, 334, 771, 913
PspPI GGNCC 1 cut(s) 25
PstNI CAGNNNCTG 2 cut(s) 551, 865
PsuI RGATCY 1 cut(s) 769
PvuII CAGCTG 1 cut(s) 610
RsaI GTAC 3 cut(s) 364, 724, 803
RsaNI GTAC 3 cut(s) 363, 723, 802
RseI CAYNNNNRTG 2 cut(s) 125, 149
Sau3AI GATC 4 cut(s) 634, 769, 894, 949
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 4 cut(s) 182, 337, 640, 641
SduI GDGCHC 3 cut(s) 9, 430, 916
SfaNI GCATC 1 cut(s) 848
SfcI CTRYAG 1 cut(s) 605
SmaI CCCGGG 1 cut(s) 641
SmiMI CAYNNNNRTG 2 cut(s) 125, 149
SmlI CTYRAG 2 cut(s) 39, 590
SmoI CTYRAG 2 cut(s) 39, 590
Sse9I AATT 5 cut(s) 133, 447, 597, 655, 881
SsiI CCGC 1 cut(s) 707
SspMI CTAG 3 cut(s) 348, 683, 746
StyD4I CCNGG 4 cut(s) 180, 335, 638, 639
StyI CCWWGG 2 cut(s) 388, 765
TaiI ACGT 2 cut(s) 764, 803
TasI AATT 5 cut(s) 133, 447, 597, 655, 881
TatI WGTACW 1 cut(s) 362
TauI GCSGC 1 cut(s) 710
TfiI GAWTC 2 cut(s) 443, 583
TscAI CASTG 5 cut(s) 132, 387, 552, 735, 913
TspDTI ATGAA 1 cut(s) 288
TspMI CCCGGG 1 cut(s) 639
TspRI CASTG 5 cut(s) 132, 387, 552, 735, 913
Van91I CCANNNNNTGG 2 cut(s) 779, 908
XapI RAATTY 2 cut(s) 133, 881
XmaI CCCGGG 1 cut(s) 639
XmiI GTMKAC 1 cut(s) 938
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 3 cut(s) 348, 683, 746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.