Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007043

Physical Location & Seq

Genomic Coordinates Forward (+)

14772449 .. 14777057

Gene Structure 4609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g21710.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGGTAGGCTTCCTGGGGCTGGGTATAATGGGAAAAGCCATAGCCATGAATCTTCTCCGCCATGGCTTCAAGGTTACTGTCTGGAACAGAACCCTCTCGAAGTGCGATGAACTTGCGGAGCATGGTGCCTCTGTTGCACAGACCCCTGCAGCAGTAGTTACAAAGTGCAAGTATACCTTTGCAATGTTATCTGATCCCTCAGCTGCTCTTGCGGTTGTGTTTGGAAAGGATGGCATTGTTGAGCATGTTTCTGGTGGAAAAGGTTACATCGACATGTCTACAGTCGATGCCGCTACTTCTTCAAAGATTAGTGAGGCGATTACAAAAAAAGGTGGTTACTTCCTTGAAGCGCCTGTTTCAGGTAGTAAAAAGCCTGCAGAAGATGGTCAACTAGTTATACTTGCAGCTGGGGAGCAGGCATTGTACGATGAAGTGCTTCCAGCCTTTAATGTCATTGGAAAAAAGTCTTTCTACTTGGGCCAGGTTGGGAATGGAGCTAAAATGAAACTTGTTGTGAATATGATAATGGGCAGTATGATGAATGCATTCTCTGAGGGACTTGTTCTTGCTGGTAGAAGTGGACTGGATCCTTCGGTTCTTCTTGACATTTTGGATCTGGGTGCAATTGCAAATCCAATGTTTAGGATGAAAGGACCCACTATGATCCAGGGCAGTCATCCACCTGCATTTCCTTTGAAACACCAGCAGAAGGACATGAGATTAGCTCTTTCCCTCGGGGATGACACATCTGTATCAATGCCAGTAGCTGCTGCAGCTAATGAGGCATTCAAGAAGGCTAGAAGCATGGGGCTTGGGGAACTTGACTTCTCAGCTGTGTATGAGATCGTAAAGGCTGTTGAACCTCCTTCTCAGATCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003858 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0035064 GO:0042393 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

295

Amino Acids

30.94

Weight (kDa)

6.97

Isoelectric Point (pI)

25.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	2 - 161	2.9e-46	NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored	PF03807	3 - 56	8.5e-06	NADP oxidoreductase coenzyme F420-dependent
NAD_binding_11	PF14833	164 - 268	6.5e-23	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25530 AT3G25530 AT3G25530
fragaria_vesca	FvH4_3g21710 FvH4_3g21710 FvH4_3g21710
malus_domestica	MD14G1000800.v1.1
prunus_persica	Prupe.7G000400_v2.0.a1 Prupe.7G000400_v2.0.a1
pyrus_communis	pycom49g00040
rosa_chinensis	RchiOBHm_Chr3g0497571
rosa_laevigata	RLG00000022451
rosa_multiflora	Rmu_sc0000212.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387920
rosa_rugosa	Rorug03G0294100 Rorug03G0294200 Rorug03G0294200 Rorug03G0294200 Rorug03G0294300 Rorug03G0294400
rosa_samantha	Rh3AG337600 Rh3BG376200 Rh3CG371900 Rh3DG372500
rosa_wichuraiana	Rw0G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	1 cut(s)	694
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	2 cut(s)	176, 281
AciI	CCGC	4 cut(s)	61, 119, 215, 294
AclWI	GGATC	5 cut(s)	191, 584, 597, 624, 661
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	3 cut(s)	22, 362, 712
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	6 cut(s)	73, 306, 350, 700, 793, 863
AhlI	ACTAGT	1 cut(s)	394
AjnI	CCWGG	3 cut(s)	15, 483, 669
AluBI	AGCT	8 cut(s)	206, 410, 500, 728, 770, 779, 836, 882
AluI	AGCT	8 cut(s)	206, 410, 500, 728, 770, 779, 836, 882
AlwI	GGATC	5 cut(s)	191, 584, 597, 624, 661
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	1 cut(s)	737
AoxI	GGCC	1 cut(s)	481
ApeKI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
Asp700I	GAANNNNTTC	2 cut(s)	438, 548
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	481, 656
AvaI	CYCGRG	1 cut(s)	737
AvaII	GGWCC	1 cut(s)	656
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	128
BbvCI	CCTCAGC	1 cut(s)	202
BbvI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BccI	CCATC	2 cut(s)	227, 380
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	3 cut(s)	17, 485, 671
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	3 cut(s)	395, 801, 883
BfmI	CTRYAG	4 cut(s)	150, 282, 378, 774
BfoI	RGCGCY	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	694
BisI	GCNGC	7 cut(s)	153, 207, 294, 408, 771, 774, 777
BlsI	GCNGC	7 cut(s)	154, 208, 295, 409, 772, 775, 778
Bme1390I	CCNGG	3 cut(s)	17, 485, 671
Bme18I	GGWCC	1 cut(s)	656
BmeT110I	CYCGRG	1 cut(s)	737
BmgT120I	GGNCC	2 cut(s)	481, 656
BmiI	GGNNCC	3 cut(s)	130, 591, 658
BmrFI	CCNGG	3 cut(s)	17, 485, 671
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
Bpu10I	CCTNAGC	1 cut(s)	202
BsaJI	CCNNGG	4 cut(s)	16, 64, 670, 736
Bsc4I	CCNNNNNNNGG	3 cut(s)	22, 362, 712
Bse1I	ACTGG	2 cut(s)	591, 764
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	3 cut(s)	17, 485, 671
BseDI	CCNNGG	4 cut(s)	16, 64, 670, 736
BseGI	GGATG	4 cut(s)	238, 654, 679, 748
BseLI	CCNNNNNNNGG	3 cut(s)	22, 362, 712
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	3 cut(s)	216, 546, 846
BseNI	ACTGG	2 cut(s)	591, 764
BseXI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BseYI	CCCAGC	2 cut(s)	22, 410
BshFI	GGCC	1 cut(s)	483
BshNI	GGYRCC	1 cut(s)	128
BsiHKCI	CYCGRG	1 cut(s)	737
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	3 cut(s)	22, 362, 712
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	3 cut(s)	548, 550, 788
BsnI	GGCC	1 cut(s)	483
BsoBI	CYCGRG	1 cut(s)	737
Bsp143I	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	4 cut(s)	61, 119, 215, 294
BspANI	GGCC	1 cut(s)	483
BspCNI	CTCAG	3 cut(s)	215, 547, 845
BspLI	GGNNCC	3 cut(s)	130, 591, 658
BspMAI	CTGCAG	3 cut(s)	154, 382, 778
BspMI	ACCTGC	1 cut(s)	694
BspPI	GGATC	5 cut(s)	191, 584, 597, 624, 661
BspT107I	GGYRCC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	591, 764
BssECI	CCNNGG	4 cut(s)	16, 64, 670, 736
BssMI	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
BssNAI	GTATAC	1 cut(s)	177
BssT1I	CCWWGG	1 cut(s)	64
Bst1107I	GTATAC	1 cut(s)	177
Bst2UI	CCWGG	3 cut(s)	17, 485, 671
Bst4CI	ACNGT	2 cut(s)	82, 286
BstC8I	GCNNGC	2 cut(s)	378, 420
BstDEI	CTNAG	4 cut(s)	202, 555, 832, 873
BstDSI	CCRYGG	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	4 cut(s)	238, 654, 679, 748
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	6 cut(s)	199, 592, 619, 669, 849, 879
BstMBI	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
BstMWI	GCNNNNNNNGC	4 cut(s)	137, 212, 776, 785
BstNI	CCWGG	3 cut(s)	17, 485, 671
BstNSI	RCATGY	2 cut(s)	251, 280
BstSCI	CCNGG	3 cut(s)	15, 483, 669
BstSFI	CTRYAG	4 cut(s)	150, 282, 378, 774
BstV1I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BstX2I	RGATCY	2 cut(s)	589, 616
BstYI	RGATCY	2 cut(s)	589, 616
BstZ17I	GTATAC	1 cut(s)	177
BsuRI	GGCC	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	4 cut(s)	238, 654, 679, 748
BveI	ACCTGC	1 cut(s)	694
Cac8I	GCNNGC	2 cut(s)	378, 420
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	481, 656
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	7 cut(s)	49, 65, 125, 248, 277, 718, 808
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	4 cut(s)	202, 555, 832, 873
DpnI	GATC	6 cut(s)	198, 591, 618, 668, 848, 878
DpnII	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	64
Eco47I	GGWCC	1 cut(s)	656
Eco88I	CYCGRG	1 cut(s)	737
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	1 cut(s)	656
EcoRII	CCWGG	3 cut(s)	15, 483, 669
EcoT14I	CCWWGG	1 cut(s)	64
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	7 cut(s)	52, 68, 128, 251, 280, 721, 811
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	7 cut(s)	48, 64, 124, 247, 276, 717, 807
FblI	GTMKAC	2 cut(s)	176, 281
Fnu4HI	GCNGC	7 cut(s)	153, 207, 294, 408, 771, 774, 777
FokI	GGATG	4 cut(s)	245, 661, 666, 755
Fsp4HI	GCNGC	7 cut(s)	153, 207, 294, 408, 771, 774, 777
FspBI	CTAG	3 cut(s)	395, 801, 883
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	7 cut(s)	153, 207, 294, 408, 771, 774, 777
GsaI	CCCAGC	2 cut(s)	26, 414
HaeII	RGCGCY	1 cut(s)	356
HaeIII	GGCC	1 cut(s)	483
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	7 cut(s)	52, 68, 128, 251, 280, 721, 811
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	1 cut(s)	52
Hpy166II	GTNNAC	4 cut(s)	177, 282, 392, 584
Hpy188I	TCNGA	3 cut(s)	196, 556, 876
Hpy188III	TCNNGA	4 cut(s)	85, 100, 605, 793
Hpy8I	GTNNAC	4 cut(s)	177, 282, 392, 584
HpyAV	CCTTC	4 cut(s)	603, 706, 790, 879
HpyCH4III	ACNGT	2 cut(s)	82, 286
HpyF10VI	GCNNNNNNNGC	4 cut(s)	137, 212, 776, 785
HpyF3I	CTNAG	4 cut(s)	202, 555, 832, 873
Hsp92II	CATG	7 cut(s)	52, 68, 128, 251, 280, 721, 811
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
LmnI	GCTCC	3 cut(s)	121, 415, 497
Lsp1109I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	395, 801, 883
MaeIII	GTNAC	4 cut(s)	76, 160, 266, 338
MalI	GATC	6 cut(s)	198, 591, 618, 668, 848, 878
MboI	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
MboII	GAAGA	4 cut(s)	47, 294, 395, 593
MfeI	CAATTG	1 cut(s)	627
MflI	RGATCY	2 cut(s)	589, 616
MluCI	AATT	1 cut(s)	627
MnlI	CCTC	8 cut(s)	107, 142, 211, 310, 550, 746, 778, 876
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	2 cut(s)	438, 548
MseI	TTAA	1 cut(s)	450
MslI	CAYNNNNRTG	2 cut(s)	47, 275
MspA1I	CMGCKG	3 cut(s)	206, 410, 836
MspR9I	CCNGG	3 cut(s)	17, 485, 671
MunI	CAATTG	1 cut(s)	627
Mva1269I	GAATGC	3 cut(s)	548, 550, 788
MvaI	CCWGG	3 cut(s)	17, 485, 671
MwoI	GCNNNNNNNGC	4 cut(s)	137, 212, 776, 785
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
NlaIII	CATG	7 cut(s)	52, 68, 128, 251, 280, 721, 811
NlaIV	GGNNCC	3 cut(s)	130, 591, 658
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	2 cut(s)	251, 280
PaqCI	CACCTGC	1 cut(s)	694
PciI	ACATGT	1 cut(s)	276
PctI	GAATGC	3 cut(s)	548, 550, 788
PdmI	GAANNNNTTC	2 cut(s)	438, 548
PfeI	GAWTC	1 cut(s)	52
PkrI	GCNGC	7 cut(s)	154, 208, 295, 409, 772, 775, 778
PpuMI	RGGWCCY	1 cut(s)	656
PscI	ACATGT	1 cut(s)	276
Psp5II	RGGWCCY	1 cut(s)	656
Psp6I	CCWGG	3 cut(s)	15, 483, 669
PspFI	CCCAGC	2 cut(s)	22, 410
PspGI	CCWGG	3 cut(s)	15, 483, 669
PspN4I	GGNNCC	3 cut(s)	130, 591, 658
PspPI	GGNCC	2 cut(s)	481, 656
PspPPI	RGGWCCY	1 cut(s)	656
PstI	CTGCAG	3 cut(s)	154, 382, 778
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	589, 616
PvuII	CAGCTG	3 cut(s)	206, 410, 836
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	2 cut(s)	47, 275
SaqAI	TTAA	1 cut(s)	450
SatI	GCNGC	7 cut(s)	153, 207, 294, 408, 771, 774, 777
Sau3AI	GATC	6 cut(s)	196, 589, 616, 666, 846, 876
Sau96I	GGNCC	2 cut(s)	481, 656
ScrFI	CCNGG	3 cut(s)	17, 485, 671
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	4 cut(s)	150, 282, 378, 774
SinI	GGWCC	1 cut(s)	656
SmiMI	CAYNNNNRTG	2 cut(s)	47, 275
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	61, 119, 215, 294
SspMI	CTAG	3 cut(s)	395, 801, 883
StyD4I	CCNGG	3 cut(s)	15, 483, 669
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	2 cut(s)	82, 286
TaqI	TCGA	3 cut(s)	101, 273, 288
TasI	AATT	1 cut(s)	627
TauI	GCSGC	1 cut(s)	296
TfiI	GAWTC	1 cut(s)	52
Tru1I	TTAA	1 cut(s)	450
Tru9I	TTAA	1 cut(s)	450
TseI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
TspDTI	ATGAA	6 cut(s)	65, 126, 447, 521, 557, 665
VpaK11BI	GGWCC	1 cut(s)	656
XagI	CCTNNNNNAGG	1 cut(s)	360
XceI	RCATGY	2 cut(s)	251, 280
XcmI	CCANNNNNNNNNTGG	1 cut(s)	491
XmiI	GTMKAC	2 cut(s)	176, 281
XmnI	GAANNNNTTC	2 cut(s)	438, 548
XspI	CTAG	3 cut(s)	395, 801, 883
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.