Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0007043

Physical Location & Seq

Genomic Coordinates Reverse (-)

47588223 .. 47594854

Gene Structure 6632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG372500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGAGGTTGGCTTCCTGGGGCTGGGAATAATGGGAAAAGCCATAGCCTTGAATCTTCTCCGCCATGGCTTCAAAGTTACTGTTTGGAACAGGACCCTCTCTAAGTGCGATGAACTCGTGGAGCATGGTGCCTCTGTCGCAGATTCCCCCGCAGCAGTAGTTAACAAGTGCAAGTTTACCTTTACAATGTTATCTGATCCTTCAGCTGCCCTTGCGGTTGTTTTTGGAAAGGATGGCATTGTAGAGCATATTTCTGGTGGAAAAGGTTACATTGACATGTCTACAGTTGATGCTGGTACTTCTTCAAAGATTAGTGAGGCGATTACAAAAAAAGGTGGTTACTTCCTTGAAGCGCCTGTTTCAGGTAGCAAAAAGCCCGCAGAAGATGGTCAACTGGTTATACTTGCAGCTGGGGAGCAGGCATTGTATGACGAAGTGCTTCCAGCTTTTAATGTCATTGGAAAGAAGTCTTTCTACTTGGGGCAGGTTGGAAATGGAGCTAAAATGAAACTTGTTGTGAATATGATAATGGGCAGTATGATGAATGCATTCTCTGAGGGACTTGTTCTTGCTGGTAGAAGTGGACTGGATCCTTCAGTTCTTCTTGATGTTTTGGATCTGGGTGGAATTGCAAATCCAATGTTTAGGTTGAAAGGACCCACTATGATTCAGGGCAGTCATTCCCCTGCATTTCCTTTGAAACATCAGCAGAAGGACATGAGATTAGCTCTTTCCCTTGGGGATGAAACTGCTGTATCAATGCCAGTAGCTGCTGCAGCTAATGAGGTAATACACGCTCTTCATTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003858 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0035064 GO:0042393 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

270

Amino Acids

28.35

Weight (kDa)

6.65

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	2 - 161	3.6e-47	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	164 - 268	4e-22	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25530 AT3G25530 AT3G25530
fragaria_vesca	FvH4_3g21710 FvH4_3g21710 FvH4_3g21710
malus_domestica	MD14G1000800.v1.1
prunus_persica	Prupe.7G000400_v2.0.a1 Prupe.7G000400_v2.0.a1
pyrus_communis	pycom49g00040
rosa_chinensis	RchiOBHm_Chr3g0497571
rosa_laevigata	RLG00000022451
rosa_multiflora	Rmu_sc0000212.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387920
rosa_rugosa	Rorug03G0294100 Rorug03G0294200 Rorug03G0294200 Rorug03G0294200 Rorug03G0294300 Rorug03G0294400
rosa_samantha	Rh3AG337600 Rh3BG376200 Rh3CG371900 Rh3DG372500
rosa_wichuraiana	Rw0G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccB1I	GGYRCC	1 cut(s)	128
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	4 cut(s)	61, 150, 215, 378
AclWI	GGATC	4 cut(s)	191, 584, 597, 624
AcuI	CTGAAG	2 cut(s)	186, 579
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	2 cut(s)	22, 362
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	6 cut(s)	52, 73, 306, 350, 652, 700
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	7 cut(s)	206, 410, 446, 500, 728, 770, 779
AluI	AGCT	7 cut(s)	206, 410, 446, 500, 728, 770, 779
AlwI	GGATC	4 cut(s)	191, 584, 597, 624
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
Asp700I	GAANNNNTTC	3 cut(s)	438, 470, 548
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	93, 656
AvaII	GGWCC	2 cut(s)	93, 656
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
BamHI	GGATCC	1 cut(s)	589
BanI	GGYRCC	1 cut(s)	128
BarI	GAAGNNNNNNTAC	2 cut(s)	458, 490
BauI	CACGAG	1 cut(s)	116
BbvI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BccI	CCATC	2 cut(s)	227, 380
BciT130I	CCWGG	1 cut(s)	17
BfmI	CTRYAG	2 cut(s)	282, 774
BfoI	RGCGCY	1 cut(s)	356
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
BlsI	GCNGC	6 cut(s)	154, 208, 409, 772, 775, 778
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	93, 656
BmgT120I	GGNCC	2 cut(s)	93, 656
BmiI	GGNNCC	4 cut(s)	95, 130, 591, 658
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
BsaJI	CCNNGG	3 cut(s)	16, 64, 736
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 362
Bse1I	ACTGG	3 cut(s)	399, 591, 764
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	16, 64, 736
BseGI	GGATG	2 cut(s)	238, 748
BseLI	CCNNNNNNNGG	2 cut(s)	22, 362
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	3 cut(s)	399, 591, 764
BseXI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BseYI	CCCAGC	2 cut(s)	22, 410
BshNI	GGYRCC	1 cut(s)	128
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	2 cut(s)	22, 362
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	2 cut(s)	548, 550
Bsp143I	GATC	3 cut(s)	196, 589, 616
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	4 cut(s)	61, 150, 215, 378
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	4 cut(s)	95, 130, 591, 658
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	4 cut(s)	191, 584, 597, 624
BspQI	GCTCTTC	1 cut(s)	804
BspT107I	GGYRCC	1 cut(s)	128
BsrI	ACTGG	3 cut(s)	399, 591, 764
BssECI	CCNNGG	3 cut(s)	16, 64, 736
BssMI	GATC	3 cut(s)	196, 589, 616
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	64, 736
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	2 cut(s)	82, 286
Bst6I	CTCTTC	1 cut(s)	804
BstC8I	GCNNGC	2 cut(s)	378, 420
BstDEI	CTNAG	2 cut(s)	102, 555
BstDSI	CCRYGG	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	238, 748
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	199, 592, 619
BstMBI	GATC	3 cut(s)	196, 589, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 212, 776
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	2 cut(s)	282, 774
BstV1I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BstX2I	RGATCY	2 cut(s)	589, 616
BstYI	RGATCY	2 cut(s)	589, 616
BtgI	CCRYGG	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	238, 748
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	378, 420
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	93, 656
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	4 cut(s)	65, 125, 277, 718
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	2 cut(s)	102, 555
DpnI	GATC	3 cut(s)	198, 591, 618
DpnII	GATC	3 cut(s)	196, 589, 616
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	64, 736
Eco47I	GGWCC	2 cut(s)	93, 656
Eco57I	CTGAAG	2 cut(s)	186, 579
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	2 cut(s)	93, 656
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	64, 736
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	64, 736
FaeI	CATG	4 cut(s)	68, 128, 280, 721
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	4 cut(s)	64, 124, 276, 717
FauI	CCCGC	2 cut(s)	157, 385
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
FokI	GGATG	2 cut(s)	245, 755
Fsp4HI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
GsaI	CCCAGC	2 cut(s)	26, 414
HaeII	RGCGCY	1 cut(s)	356
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	4 cut(s)	68, 128, 280, 721
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	2 cut(s)	163, 392
HindII	GTYRAC	2 cut(s)	163, 392
HinfI	GANTC	3 cut(s)	52, 143, 667
HpaI	GTTAAC	1 cut(s)	163
Hpy166II	GTNNAC	5 cut(s)	163, 177, 282, 392, 584
Hpy188I	TCNGA	2 cut(s)	196, 556
Hpy188III	TCNNGA	1 cut(s)	605
Hpy8I	GTNNAC	5 cut(s)	163, 177, 282, 392, 584
HpyAV	CCTTC	3 cut(s)	210, 603, 706
HpyCH4III	ACNGT	2 cut(s)	82, 286
HpyCH4V	TGCA	6 cut(s)	171, 407, 548, 632, 689, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 212, 776
HpyF3I	CTNAG	2 cut(s)	102, 555
Hsp92II	CATG	4 cut(s)	68, 128, 280, 721
HspAI	GCGC	1 cut(s)	353
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	3 cut(s)	196, 589, 616
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	3 cut(s)	121, 415, 497
Lsp1109I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
LweI	GCATC	1 cut(s)	280
MaeIII	GTNAC	3 cut(s)	76, 266, 338
MalI	GATC	3 cut(s)	198, 591, 618
MboI	GATC	3 cut(s)	196, 589, 616
MboII	GAAGA	5 cut(s)	47, 294, 395, 593, 791
MflI	RGATCY	2 cut(s)	589, 616
MluCI	AATT	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	5 cut(s)	107, 142, 310, 550, 778
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	3 cut(s)	438, 470, 548
MseI	TTAA	2 cut(s)	162, 450
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	2 cut(s)	206, 410
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	2 cut(s)	548, 550
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	3 cut(s)	137, 212, 776
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	3 cut(s)	196, 589, 616
NlaIII	CATG	4 cut(s)	68, 128, 280, 721
NlaIV	GGNNCC	4 cut(s)	95, 130, 591, 658
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	280
PciI	ACATGT	1 cut(s)	276
PciSI	GCTCTTC	1 cut(s)	804
PctI	GAATGC	2 cut(s)	548, 550
PdmI	GAANNNNTTC	3 cut(s)	438, 470, 548
PfeI	GAWTC	3 cut(s)	52, 143, 667
PkrI	GCNGC	6 cut(s)	154, 208, 409, 772, 775, 778
PpuMI	RGGWCCY	2 cut(s)	93, 656
PscI	ACATGT	1 cut(s)	276
Psp5II	RGGWCCY	2 cut(s)	93, 656
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	2 cut(s)	22, 410
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	4 cut(s)	95, 130, 591, 658
PspPI	GGNCC	2 cut(s)	93, 656
PspPPI	RGGWCCY	2 cut(s)	93, 656
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	589, 616
PvuII	CAGCTG	2 cut(s)	206, 410
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	275
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	2 cut(s)	162, 450
SatI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
Sau3AI	GATC	3 cut(s)	196, 589, 616
Sau96I	GGNCC	2 cut(s)	93, 656
ScrFI	CCNGG	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	282, 774
SinI	GGWCC	2 cut(s)	93, 656
SmiMI	CAYNNNNRTG	1 cut(s)	275
Sse9I	AATT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	61, 150, 215, 378
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	64, 736
TaaI	ACNGT	2 cut(s)	82, 286
TasI	AATT	1 cut(s)	627
TfiI	GAWTC	3 cut(s)	52, 143, 667
Tru1I	TTAA	2 cut(s)	162, 450
Tru9I	TTAA	2 cut(s)	162, 450
TseI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
TspDTI	ATGAA	5 cut(s)	126, 521, 557, 759, 791
VpaK11BI	GGWCC	2 cut(s)	93, 656
XagI	CCTNNNNNAGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	3 cut(s)	438, 470, 548
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.