Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0007043

Physical Location & Seq

Genomic Coordinates Forward (+)

167485 .. 174696

Gene Structure 7212 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1000800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGAGGTCGGGTTTCTGGGGCTGGGAATAATGGGGAAAGCCATGTCTATGAATCTGCTCAGGCATGGCTTCAAGGTAACCGTTTGGAACAGGACTCTTTCTAAGAGTCATGAACTCGTGGAGCATGGTGCTTCTGTTGCAGAAACCCCTGCAGAAGTGGTTAGGAAGTGCAAGTATACCATTGCAATGTTATCTGATCCTTCAGCTGCTCTTTCGGTGGTGTTTGGAAAAGATGGCATTCTTGAGCAGATTTGTGCTGGAAAATCTTATGTTGACATGTCTACAGTTGATGCTGATACTTCTTCAAAGATCAATGAGGCAATTAAAGAAAGGGGCGGTTACTTTCTTGAAGCTCCTGTTTCAGGTAGCAAAAAGCCCGCAGAAGATGGTCAACTAGTTATCCTTGCAGCTGGTGAGAAGGCATTGTACGAGGAAGTGATTCCGGCTTTCAATGTCATGGGAAAGAAGTCTTTCTATTTGGGGCAGGTTGGAAATGGAGCAAAAATGAAACTTGTTGTCAACATGATAATGGGAAGCATGATGAATGCATTCTCTGAAGGACTTGTTCTTGCTGGGAGAAGTGGACTAGAACCTTCTGTTCTTCTTGATGTGTTGGATCTAGGTGGAATTGCAAACCCAATGTTTAGGTTGAAAGGACCCACTATGATACAGGGCAGTCACTCGCCTGCATTTCCTTTGAAACATCAACAGAAGGACATGAGATTGGCTCTTGCCCTTGGGGATGAAACAGCTACATCAATGCCAGTAGCTGCTGCAGCTAATGAGGCTTTCAAGAAGGCTAGAAGCATGGGGCTTGGGGACCTTGACTTTTCTGCTGTCTATGAGACCGTGAAGACTCTTGAAGAACCCTCTCGAAACAGCCAACTGCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003858 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0035064 GO:0042393 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

298

Amino Acids

31.75

Weight (kDa)

6.98

Isoelectric Point (pI)

27.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	2 - 161	2.5e-47	NAD binding domain of 6-phosphogluconate dehydrogenase
NAD_binding_11	PF14833	164 - 282	5.5e-25	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25530 AT3G25530 AT3G25530
fragaria_vesca	FvH4_3g21710 FvH4_3g21710 FvH4_3g21710
malus_domestica	MD14G1000800.v1.1
prunus_persica	Prupe.7G000400_v2.0.a1 Prupe.7G000400_v2.0.a1
pyrus_communis	pycom49g00040
rosa_chinensis	RchiOBHm_Chr3g0497571
rosa_laevigata	RLG00000022451
rosa_multiflora	Rmu_sc0000212.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387920
rosa_rugosa	Rorug03G0294100 Rorug03G0294200 Rorug03G0294200 Rorug03G0294200 Rorug03G0294300 Rorug03G0294400
rosa_samantha	Rh3AG337600 Rh3BG376200 Rh3CG371900 Rh3DG372500
rosa_wichuraiana	Rw0G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	2 cut(s)	176, 281
AciI	CCGC	2 cut(s)	336, 378
AclWI	GGATC	2 cut(s)	191, 624
AcuI	CTGAAG	2 cut(s)	186, 576
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	8 cut(s)	73, 306, 350, 451, 652, 700, 793, 863
AhlI	ACTAGT	1 cut(s)	394
AluBI	AGCT	6 cut(s)	206, 353, 410, 752, 770, 779
AluI	AGCT	6 cut(s)	206, 353, 410, 752, 770, 779
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	2 cut(s)	191, 624
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	5 cut(s)	206, 407, 770, 773, 776
Asp700I	GAANNNNTTC	3 cut(s)	438, 470, 548
AspS9I	GGNCC	2 cut(s)	656, 820
AsuHPI	GGTGA	1 cut(s)	425
AvaII	GGWCC	2 cut(s)	656, 820
BarI	GAAGNNNNNNTAC	2 cut(s)	410, 442
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	860
BbvI	GCAGC	5 cut(s)	193, 419, 757, 760, 788
BccI	CCATC	2 cut(s)	227, 380
BcoDI	GTCTC	1 cut(s)	839
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	4 cut(s)	395, 587, 620, 801
BfmI	CTRYAG	3 cut(s)	150, 282, 774
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	5 cut(s)	207, 408, 771, 774, 777
BlsI	GCNGC	5 cut(s)	208, 409, 772, 775, 778
Bme18I	GGWCC	2 cut(s)	656, 820
BmgT120I	GGNCC	2 cut(s)	656, 820
BmiI	GGNNCC	2 cut(s)	658, 821
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	860
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
Bpu10I	CCTNAGC	1 cut(s)	59
BpuEI	CTTGAG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	1 cut(s)	736
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	1 cut(s)	764
Bse3DI	GCAATG	2 cut(s)	180, 192
BseDI	CCNNGG	1 cut(s)	736
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMI	GCAATG	2 cut(s)	180, 192
BseMII	CTCAG	1 cut(s)	73
BseNI	ACTGG	1 cut(s)	764
BseXI	GCAGC	5 cut(s)	193, 419, 757, 760, 788
BseYI	CCCAGC	2 cut(s)	22, 572
BsiSI	CCGG	1 cut(s)	443
BslFI	GGGAC	1 cut(s)	833
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	839
BsmFI	GGGAC	1 cut(s)	833
BsmI	GAATGC	3 cut(s)	237, 548, 550
Bso31I	GGTCTC	1 cut(s)	839
Bsp143I	GATC	3 cut(s)	196, 309, 616
BspACI	CCGC	2 cut(s)	336, 378
BspCNI	CTCAG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	109
BspLI	GGNNCC	2 cut(s)	658, 821
BspMAI	CTGCAG	2 cut(s)	154, 778
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	2 cut(s)	191, 624
BspTNI	GGTCTC	1 cut(s)	839
BsrDI	GCAATG	2 cut(s)	180, 192
BsrI	ACTGG	1 cut(s)	764
BssECI	CCNNGG	1 cut(s)	736
BssMI	GATC	3 cut(s)	196, 309, 616
BssNAI	GTATAC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	736
Bst1107I	GTATAC	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	82, 286, 850
BstC8I	GCNNGC	2 cut(s)	378, 687
BstDEI	CTNAG	2 cut(s)	59, 102
BstEII	GGTNACC	1 cut(s)	76
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	3 cut(s)	199, 312, 619
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	3 cut(s)	196, 309, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 776, 785
BstNSI	RCATGY	1 cut(s)	280
BstPI	GGTNACC	1 cut(s)	76
BstSFI	CTRYAG	3 cut(s)	150, 282, 774
BstV1I	GCAGC	5 cut(s)	193, 419, 757, 760, 788
BstV2I	GAAGAC	1 cut(s)	860
BstX2I	RGATCY	1 cut(s)	616
BstYI	RGATCY	1 cut(s)	616
BstZ17I	GTATAC	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	748
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	378, 687
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	656, 820
Csp6I	GTAC	1 cut(s)	427
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	59, 102
DpnI	GATC	3 cut(s)	198, 311, 618
DpnII	GATC	3 cut(s)	196, 309, 616
Eco130I	CCWWGG	1 cut(s)	736
Eco31I	GGTCTC	1 cut(s)	839
Eco47I	GGWCC	2 cut(s)	656, 820
Eco57I	CTGAAG	2 cut(s)	186, 576
Eco91I	GGTNACC	1 cut(s)	76
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	2 cut(s)	656, 820
EcoO65I	GGTNACC	1 cut(s)	76
EcoT14I	CCWWGG	1 cut(s)	736
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	1 cut(s)	736
FaqI	GGGAC	1 cut(s)	833
FauI	CCCGC	1 cut(s)	385
FblI	GTMKAC	2 cut(s)	176, 281
Fnu4HI	GCNGC	5 cut(s)	207, 408, 771, 774, 777
FokI	GGATG	1 cut(s)	755
Fsp4HI	GCNGC	5 cut(s)	207, 408, 771, 774, 777
FspBI	CTAG	4 cut(s)	395, 587, 620, 801
GluI	GCNGC	5 cut(s)	207, 408, 771, 774, 777
GsaI	CCCAGC	2 cut(s)	26, 576
HapII	CCGG	1 cut(s)	443
HincII	GTYRAC	3 cut(s)	274, 392, 520
HindII	GTYRAC	3 cut(s)	274, 392, 520
HinfI	GANTC	5 cut(s)	52, 94, 106, 439, 856
HpaII	CCGG	1 cut(s)	443
HphI	GGTGA	1 cut(s)	425
Hpy166II	GTNNAC	6 cut(s)	177, 274, 282, 392, 520, 584
Hpy188I	TCNGA	2 cut(s)	196, 556
Hpy188III	TCNNGA	7 cut(s)	110, 242, 347, 605, 793, 860, 873
Hpy8I	GTNNAC	6 cut(s)	177, 274, 282, 392, 520, 584
HpyAV	CCTTC	6 cut(s)	210, 412, 551, 603, 706, 790
HpyCH4III	ACNGT	3 cut(s)	82, 286, 850
HpyCH4V	TGCA	9 cut(s)	140, 152, 171, 185, 407, 548, 632, 689, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 776, 785
HpyF3I	CTNAG	2 cut(s)	59, 102
Kzo9I	GATC	3 cut(s)	196, 309, 616
LmnI	GCTCC	3 cut(s)	121, 358, 497
Lsp1109I	GCAGC	5 cut(s)	193, 419, 757, 760, 788
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	4 cut(s)	395, 587, 620, 801
MaeIII	GTNAC	3 cut(s)	76, 338, 677
MalI	GATC	3 cut(s)	198, 311, 618
MboI	GATC	3 cut(s)	196, 309, 616
MboII	GAAGA	5 cut(s)	294, 395, 593, 865, 875
MflI	RGATCY	1 cut(s)	616
MluCI	AATT	2 cut(s)	321, 627
MlyI	GAGTC	3 cut(s)	88, 115, 850
MmeI	TCCRAC	2 cut(s)	469, 594
MnlI	CCTC	4 cut(s)	310, 424, 778, 880
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	3 cut(s)	438, 470, 548
MseI	TTAA	2 cut(s)	324, 892
MslI	CAYNNNNRTG	3 cut(s)	47, 185, 527
MspA1I	CMGCKG	2 cut(s)	206, 410
MspI	CCGG	1 cut(s)	443
Mva1269I	GAATGC	3 cut(s)	237, 548, 550
MwoI	GCNNNNNNNGC	3 cut(s)	137, 776, 785
NdeII	GATC	3 cut(s)	196, 309, 616
NlaIV	GGNNCC	2 cut(s)	658, 821
NmuCI	GTSAC	1 cut(s)	677
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	280
PagI	TCATGA	1 cut(s)	109
PciI	ACATGT	1 cut(s)	276
PctI	GAATGC	3 cut(s)	237, 548, 550
PdmI	GAANNNNTTC	3 cut(s)	438, 470, 548
PfeI	GAWTC	2 cut(s)	52, 439
PkrI	GCNGC	5 cut(s)	208, 409, 772, 775, 778
PleI	GAGTC	3 cut(s)	88, 114, 850
PpsI	GAGTC	3 cut(s)	88, 114, 850
PpuMI	RGGWCCY	2 cut(s)	656, 820
PscI	ACATGT	1 cut(s)	276
Psp5II	RGGWCCY	2 cut(s)	656, 820
PspEI	GGTNACC	1 cut(s)	76
PspFI	CCCAGC	2 cut(s)	22, 572
PspN4I	GGNNCC	2 cut(s)	658, 821
PspPI	GGNCC	2 cut(s)	656, 820
PspPPI	RGGWCCY	2 cut(s)	656, 820
PstI	CTGCAG	2 cut(s)	154, 778
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	1 cut(s)	616
PvuII	CAGCTG	2 cut(s)	206, 410
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	3 cut(s)	47, 185, 527
SaqAI	TTAA	2 cut(s)	324, 892
SatI	GCNGC	5 cut(s)	207, 408, 771, 774, 777
Sau3AI	GATC	3 cut(s)	196, 309, 616
Sau96I	GGNCC	2 cut(s)	656, 820
SchI	GAGTC	3 cut(s)	88, 115, 850
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	3 cut(s)	150, 282, 774
SinI	GGWCC	2 cut(s)	656, 820
SmiMI	CAYNNNNRTG	3 cut(s)	47, 185, 527
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	2 cut(s)	321, 627
SsiI	CCGC	2 cut(s)	336, 378
SspMI	CTAG	4 cut(s)	395, 587, 620, 801
StyI	CCWWGG	1 cut(s)	736
TaaI	ACNGT	3 cut(s)	82, 286, 850
TaqI	TCGA	1 cut(s)	874
TasI	AATT	2 cut(s)	321, 627
TfiI	GAWTC	2 cut(s)	52, 439
Tru1I	TTAA	2 cut(s)	324, 892
Tru9I	TTAA	2 cut(s)	324, 892
TseFI	GTSAC	1 cut(s)	677
TseI	GCWGC	5 cut(s)	206, 407, 770, 773, 776
Tsp45I	GTSAC	1 cut(s)	677
TspDTI	ATGAA	5 cut(s)	65, 126, 521, 557, 759
VpaK11BI	GGWCC	2 cut(s)	656, 820
XagI	CCTNNNNNAGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	2 cut(s)	176, 281
XmnI	GAANNNNTTC	3 cut(s)	438, 470, 548
XspI	CTAG	4 cut(s)	395, 587, 620, 801
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.