Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0007043

Physical Location & Seq

Genomic Coordinates Forward (+)

208521 .. 215785

Gene Structure 7265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00387920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGGTAGGCTTCCTGGGGCTTGGAATAATGGGAAAAGCCATAGCCTTGAATCTTCTCCGCCATGGCTTCAAAGTTACTGTTTGGAACAGGACCCTCTCTAAGTGCGATGAACTTGTGGAGCATGGTGCTTCTGTCGCAGAATCCCCCGCAGCAGTAGTTAAGAAGTGCAAGTTTACCTTTACAATGTTATCTGATCCTTCAGCTGCTCTTGCGGTTGTTTTTGGAAAGGATGGCATTGTTGAGCATATTTCTGGTGGAAAAGGTTACATTGACATGTCTACAGTTGATGCTGGTACTTCTTCAAAGATTAGTGAGGCGATTACAAAAAAAGGTGGTTTCTTCCTTGAAGCGCCTGTTTCAGGTAGCAAAAAGCCCGCAGAAGATGGTCAACTAGTTATACTTGCAGCTGGGGAGCAGGCATTGTATGAGGAAGTGCTTCCAGCTTTTAATGTCATTGGAAAGAAGTCTTTCTACTTGGGGCAGGTTGGAAATGGAGCTAAAATGAAACTTGTTGTGAATATGATAATGGGCAGTATGATGAATGCATTCTCTGAGGGACTTGTCCTTGCTGGTAGAAGTGGACTGGATCCTTCAGTTCTTCTTGATGTTTTGGATCTGGGTGGAATTGCAAATCCAATGTTTAGGTTGAAAGGACCCACTATGATTCAGGGCAGTCATTCACCTGCATTTCCTTTGAAACATCAGCAGAAGGACATGAGATTAGCTCTTTCCCTTGGGGATGAAACTGCTGTATCAATGCCAGTAGCTGCTGCAGCTAATGAGGCATTCAAGAAGGCTAGAAGCATGGGGCTTGGGGAGCTTGACTTCTCAGCTGTGTATGAGACCGTGAAGGCTCTTGAACCTCCCTCTCAAATCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003858 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0035064 GO:0042393 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

294

Amino Acids

30.92

Weight (kDa)

6.97

Isoelectric Point (pI)

29.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_2	PF03446	2 - 161	1.1e-47	NAD binding domain of 6-phosphogluconate dehydrogenase
F420_oxidored	PF03807	3 - 61	8.7e-06	NADP oxidoreductase coenzyme F420-dependent
NAD_binding_11	PF14833	164 - 282	8.8e-26	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25530 AT3G25530 AT3G25530
fragaria_vesca	FvH4_3g21710 FvH4_3g21710 FvH4_3g21710
malus_domestica	MD14G1000800.v1.1
prunus_persica	Prupe.7G000400_v2.0.a1 Prupe.7G000400_v2.0.a1
pyrus_communis	pycom49g00040
rosa_chinensis	RchiOBHm_Chr3g0497571
rosa_laevigata	RLG00000022451
rosa_multiflora	Rmu_sc0000212.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387920
rosa_rugosa	Rorug03G0294100 Rorug03G0294200 Rorug03G0294200 Rorug03G0294200 Rorug03G0294300 Rorug03G0294400
rosa_samantha	Rh3AG337600 Rh3BG376200 Rh3CG371900 Rh3DG372500
rosa_wichuraiana	Rw0G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	694
Acc36I	ACCTGC	2 cut(s)	475, 694
AccI	GTMKAC	1 cut(s)	281
AciI	CCGC	4 cut(s)	61, 150, 215, 378
AclWI	GGATC	4 cut(s)	191, 584, 597, 624
AcuI	CTGAAG	2 cut(s)	186, 579
AfaI	GTAC	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	362
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	8 cut(s)	52, 73, 306, 350, 652, 700, 793, 863
AhlI	ACTAGT	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	15
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	4 cut(s)	191, 584, 597, 624
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
Asp700I	GAANNNNTTC	3 cut(s)	438, 470, 548
AspLEI	GCGC	1 cut(s)	355
AspS9I	GGNCC	2 cut(s)	93, 656
AsuHPI	GGTGA	1 cut(s)	675
AvaII	GGWCC	2 cut(s)	93, 656
BaeI	ACNNNNGTAYC	2 cut(s)	738, 771
BamHI	GGATCC	1 cut(s)	589
BarI	GAAGNNNNNNTAC	2 cut(s)	458, 490
BbvI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BccI	CCATC	2 cut(s)	227, 380
BciT130I	CCWGG	1 cut(s)	17
BcoDI	GTCTC	1 cut(s)	839
BcuI	ACTAGT	1 cut(s)	394
BfaI	CTAG	3 cut(s)	395, 801, 883
BfmI	CTRYAG	2 cut(s)	282, 774
BfoI	RGCGCY	1 cut(s)	356
BfuAI	ACCTGC	2 cut(s)	475, 694
BisI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
BlsI	GCNGC	6 cut(s)	154, 208, 409, 772, 775, 778
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	2 cut(s)	93, 656
BmgT120I	GGNCC	2 cut(s)	93, 656
BmiI	GGNNCC	3 cut(s)	95, 591, 658
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	3 cut(s)	16, 64, 736
Bsc4I	CCNNNNNNNGG	1 cut(s)	362
Bse1I	ACTGG	2 cut(s)	591, 764
BseBI	CCWGG	1 cut(s)	17
BseDI	CCNNGG	3 cut(s)	16, 64, 736
BseGI	GGATG	2 cut(s)	238, 748
BseLI	CCNNNNNNNGG	1 cut(s)	362
BseMII	CTCAG	2 cut(s)	546, 846
BseNI	ACTGG	2 cut(s)	591, 764
BseXI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BseYI	CCCAGC	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	573
BslI	CCNNNNNNNGG	1 cut(s)	362
BsmAI	GTCTC	1 cut(s)	839
BsmFI	GGGAC	1 cut(s)	573
BsmI	GAATGC	3 cut(s)	548, 550, 788
Bso31I	GGTCTC	1 cut(s)	839
Bsp143I	GATC	3 cut(s)	196, 589, 616
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	4 cut(s)	61, 150, 215, 378
BspCNI	CTCAG	2 cut(s)	547, 845
BspLI	GGNNCC	3 cut(s)	95, 591, 658
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	2 cut(s)	475, 694
BspPI	GGATC	4 cut(s)	191, 584, 597, 624
BspTNI	GGTCTC	1 cut(s)	839
BsrI	ACTGG	2 cut(s)	591, 764
BssECI	CCNNGG	3 cut(s)	16, 64, 736
BssMI	GATC	3 cut(s)	196, 589, 616
BssT1I	CCWWGG	2 cut(s)	64, 736
Bst2UI	CCWGG	1 cut(s)	17
Bst4CI	ACNGT	3 cut(s)	82, 286, 850
BstC8I	GCNNGC	2 cut(s)	378, 420
BstDEI	CTNAG	3 cut(s)	102, 555, 832
BstDSI	CCRYGG	1 cut(s)	64
BstENI	CCTNNNNNAGG	1 cut(s)	360
BstF5I	GGATG	2 cut(s)	238, 748
BstH2I	RGCGCY	1 cut(s)	356
BstHHI	GCGC	1 cut(s)	355
BstKTI	GATC	3 cut(s)	199, 592, 619
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	3 cut(s)	196, 589, 616
BstMWI	GCNNNNNNNGC	5 cut(s)	137, 212, 776, 785, 820
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	280
BstSCI	CCNGG	1 cut(s)	15
BstSFI	CTRYAG	2 cut(s)	282, 774
BstV1I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BstX2I	RGATCY	2 cut(s)	589, 616
BstYI	RGATCY	2 cut(s)	589, 616
BtgI	CCRYGG	1 cut(s)	64
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	238, 748
BveI	ACCTGC	2 cut(s)	475, 694
Cac8I	GCNNGC	2 cut(s)	378, 420
CaiI	CAGNNNCTG	1 cut(s)	770
CfoI	GCGC	1 cut(s)	355
Cfr13I	GGNCC	2 cut(s)	93, 656
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	5 cut(s)	65, 125, 277, 718, 808
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	3 cut(s)	102, 555, 832
DpnI	GATC	3 cut(s)	198, 591, 618
DpnII	GATC	3 cut(s)	196, 589, 616
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	2 cut(s)	64, 736
Eco31I	GGTCTC	1 cut(s)	839
Eco47I	GGWCC	2 cut(s)	93, 656
Eco57I	CTGAAG	2 cut(s)	186, 579
EcoNI	CCTNNNNNAGG	1 cut(s)	360
EcoO109I	RGGNCCY	2 cut(s)	93, 656
EcoRII	CCWGG	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	64, 736
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	64, 736
FaeI	CATG	5 cut(s)	68, 128, 280, 721, 811
FalI	AAGNNNNNCTT	2 cut(s)	164, 196
FaqI	GGGAC	1 cut(s)	573
FatI	CATG	5 cut(s)	64, 124, 276, 717, 807
FauI	CCCGC	2 cut(s)	157, 385
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
FokI	GGATG	2 cut(s)	245, 755
Fsp4HI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
FspBI	CTAG	3 cut(s)	395, 801, 883
GlaI	GCGC	1 cut(s)	354
GluI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
GsaI	CCCAGC	1 cut(s)	414
HaeII	RGCGCY	1 cut(s)	356
HhaI	GCGC	1 cut(s)	355
Hin1II	CATG	5 cut(s)	68, 128, 280, 721, 811
Hin6I	GCGC	1 cut(s)	353
HinP1I	GCGC	1 cut(s)	353
HincII	GTYRAC	1 cut(s)	392
HindII	GTYRAC	1 cut(s)	392
HinfI	GANTC	3 cut(s)	52, 143, 667
HphI	GGTGA	1 cut(s)	675
Hpy166II	GTNNAC	4 cut(s)	177, 282, 392, 584
Hpy188I	TCNGA	2 cut(s)	196, 556
Hpy188III	TCNNGA	3 cut(s)	605, 793, 860
Hpy8I	GTNNAC	4 cut(s)	177, 282, 392, 584
HpyAV	CCTTC	5 cut(s)	210, 603, 706, 790, 847
HpyCH4III	ACNGT	3 cut(s)	82, 286, 850
HpyCH4V	TGCA	6 cut(s)	171, 407, 548, 632, 689, 776
HpyF10VI	GCNNNNNNNGC	5 cut(s)	137, 212, 776, 785, 820
HpyF3I	CTNAG	3 cut(s)	102, 555, 832
Hsp92II	CATG	5 cut(s)	68, 128, 280, 721, 811
HspAI	GCGC	1 cut(s)	353
Kzo9I	GATC	3 cut(s)	196, 589, 616
LmnI	GCTCC	4 cut(s)	121, 415, 497, 820
Lsp1109I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	3 cut(s)	395, 801, 883
MaeIII	GTNAC	2 cut(s)	76, 266
MalI	GATC	3 cut(s)	198, 591, 618
MboI	GATC	3 cut(s)	196, 589, 616
MboII	GAAGA	5 cut(s)	47, 294, 334, 395, 593
MflI	RGATCY	2 cut(s)	589, 616
MluCI	AATT	1 cut(s)	627
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	7 cut(s)	107, 310, 424, 550, 778, 876, 880
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	3 cut(s)	438, 470, 548
MseI	TTAA	2 cut(s)	162, 450
MslI	CAYNNNNRTG	1 cut(s)	275
MspA1I	CMGCKG	3 cut(s)	206, 410, 836
MspR9I	CCNGG	1 cut(s)	17
Mva1269I	GAATGC	3 cut(s)	548, 550, 788
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	5 cut(s)	137, 212, 776, 785, 820
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	3 cut(s)	196, 589, 616
NlaIII	CATG	5 cut(s)	68, 128, 280, 721, 811
NlaIV	GGNNCC	3 cut(s)	95, 591, 658
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	280
PaqCI	CACCTGC	1 cut(s)	694
PciI	ACATGT	1 cut(s)	276
PctI	GAATGC	3 cut(s)	548, 550, 788
PdmI	GAANNNNTTC	3 cut(s)	438, 470, 548
PfeI	GAWTC	3 cut(s)	52, 143, 667
PkrI	GCNGC	6 cut(s)	154, 208, 409, 772, 775, 778
PpuMI	RGGWCCY	2 cut(s)	93, 656
PscI	ACATGT	1 cut(s)	276
Psp5II	RGGWCCY	2 cut(s)	93, 656
Psp6I	CCWGG	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	410
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	3 cut(s)	95, 591, 658
PspPI	GGNCC	2 cut(s)	93, 656
PspPPI	RGGWCCY	2 cut(s)	93, 656
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	589, 616
PvuII	CAGCTG	3 cut(s)	206, 410, 836
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
RseI	CAYNNNNRTG	1 cut(s)	275
SaqAI	TTAA	2 cut(s)	162, 450
SatI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
Sau3AI	GATC	3 cut(s)	196, 589, 616
Sau96I	GGNCC	2 cut(s)	93, 656
ScrFI	CCNGG	1 cut(s)	17
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	2 cut(s)	282, 774
SinI	GGWCC	2 cut(s)	93, 656
SmiMI	CAYNNNNRTG	1 cut(s)	275
SpeI	ACTAGT	1 cut(s)	394
Sse9I	AATT	1 cut(s)	627
SsiI	CCGC	4 cut(s)	61, 150, 215, 378
SspMI	CTAG	3 cut(s)	395, 801, 883
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	64, 736
TaaI	ACNGT	3 cut(s)	82, 286, 850
TasI	AATT	1 cut(s)	627
TfiI	GAWTC	3 cut(s)	52, 143, 667
Tru1I	TTAA	2 cut(s)	162, 450
Tru9I	TTAA	2 cut(s)	162, 450
TseI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
TspDTI	ATGAA	4 cut(s)	126, 521, 557, 759
VpaK11BI	GGWCC	2 cut(s)	93, 656
XagI	CCTNNNNNAGG	1 cut(s)	360
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	3 cut(s)	438, 470, 548
XspI	CTAG	3 cut(s)	395, 801, 883
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.