Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0007043

Physical Location & Seq

Genomic Coordinates Reverse (-)

112421 .. 120838

Gene Structure 8418 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G000400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGGTCGGGTTTTTGGGGCTGGGAATAATGGGGAAAGCCATGTCCATGAATCTGCTTCGCCATGGCTTCAAGGTCACCGTTTGGAACAGGACCCTCTCTAAGTGTGACGAGCTCGTGGAGCATGGTGCTTCTGTTGCAGAAACCCCTGCAGCAGTGGTTAAGAAGTGCAAGTATACAATTGCAATGTTATCTGATCCTTCTGCTGCCTTTTCGGTGGTTTTTGGCAAAGATGGCATTCTTGAGCAGATTTGTGCCGGAAAAGGTTACGTCGACATGTCTACAGTTGATGCTGATACTTCTACAAAGATTAATGAGGCAATTACAGCAAAGGGTGGTTACTTCCTTGAAGCTCCTGTTTCAGGTAGCAAAAAGCCTGCCGAAGATGGTCAATTAGTTATCCTTGCAGCTGGGGAGAAGGCATTGTACGAGGAAGTGATTCCTGCTTTTAATGTCATGGGGAAGAAGTCTTTCTACCTGGGGCAGGTTGGAAATGGAGCAAAAATGAAACTTGTTGTCAATATGATAATGGGAAGCATGATCAATGCATTCTCTGAGGGACTTGTTCTCGCTGGAAGAAGTGGACTGGATCCTAGTGTTCTTCTTGATGTATTGGATCTGGGTGGAATTGCAAATCCAATGTTTAGATTGAAAGGACCCACTATGATTCAGGGCAGTCACTCTCCTGCATTTCCTTTAAAACATCAGCAGAAAGACATGAGATTAGCTCTTGCCCTTGGGGATGAAACTGCTACATCAATGCCAGTAGCTGCTGCAGCTAATGAGGCTTTCAAGAAGGCAAGAAGCATGGGGCTTGGGGACCTTGACTTTTCAGCTGTGTATGAGACCGTGAAGGCACTTGAACAACCCTCTCAAAAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003858 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0035064 GO:0042393 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

295

Amino Acids

31.1

Weight (kDa)

6.91

Isoelectric Point (pI)

24.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25530 AT3G25530 AT3G25530
fragaria_vesca	FvH4_3g21710 FvH4_3g21710 FvH4_3g21710
malus_domestica	MD14G1000800.v1.1
prunus_persica	Prupe.7G000400_v2.0.a1 Prupe.7G000400_v2.0.a1
pyrus_communis	pycom49g00040
rosa_chinensis	RchiOBHm_Chr3g0497571
rosa_laevigata	RLG00000022451
rosa_multiflora	Rmu_sc0000212.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387920
rosa_rugosa	Rorug03G0294100 Rorug03G0294200 Rorug03G0294200 Rorug03G0294200 Rorug03G0294300 Rorug03G0294400
rosa_samantha	Rh3AG337600 Rh3BG376200 Rh3CG371900 Rh3DG372500
rosa_wichuraiana	Rw0G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	475
AccI	GTMKAC	3 cut(s)	176, 273, 281
AclWI	GGATC	4 cut(s)	191, 584, 597, 624
AfaI	GTAC	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	362, 484
AflIII	ACRYGT	1 cut(s)	276
AgsI	TTSAA	5 cut(s)	73, 350, 652, 793, 863
AjnI	CCWGG	1 cut(s)	477
AluBI	AGCT	7 cut(s)	115, 353, 410, 728, 770, 779, 836
AluI	AGCT	7 cut(s)	115, 353, 410, 728, 770, 779, 836
Alw21I	GWGCWC	1 cut(s)	117
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	4 cut(s)	191, 584, 597, 624
AlwNI	CAGNNNCTG	1 cut(s)	770
ApeKI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
AseI	ATTAAT	1 cut(s)	312
Asp700I	GAANNNNTTC	2 cut(s)	438, 470
AspS9I	GGNCC	3 cut(s)	93, 656, 820
AsuHPI	GGTGA	1 cut(s)	70
AvaII	GGWCC	3 cut(s)	93, 656, 820
BamHI	GGATCC	1 cut(s)	589
BanII	GRGCYC	1 cut(s)	117
BarI	GAAGNNNNNNTAC	4 cut(s)	410, 442, 458, 490
BauI	CACGAG	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	117
BbvI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BccI	CCATC	2 cut(s)	227, 380
BciT130I	CCWGG	1 cut(s)	479
BclI	TGATCA	1 cut(s)	540
BcoDI	GTCTC	1 cut(s)	839
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	3 cut(s)	150, 282, 774
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
BlsI	GCNGC	6 cut(s)	154, 208, 409, 772, 775, 778
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	3 cut(s)	93, 656, 820
BmgT120I	GGNCC	3 cut(s)	93, 656, 820
BmiI	GGNNCC	4 cut(s)	95, 591, 658, 821
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	280
BplI	GAGNNNNNCTC	2 cut(s)	712, 744
BpuEI	CTTGAG	1 cut(s)	263
BsaI	GGTCTC	1 cut(s)	839
BsaJI	CCNNGG	3 cut(s)	64, 478, 736
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bsc4I	CCNNNNNNNGG	2 cut(s)	362, 484
Bse1I	ACTGG	2 cut(s)	591, 764
Bse3DI	GCAATG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	479
BseDI	CCNNGG	3 cut(s)	64, 478, 736
BseGI	GGATG	1 cut(s)	748
BseLI	CCNNNNNNNGG	2 cut(s)	362, 484
BseMI	GCAATG	1 cut(s)	192
BseMII	CTCAG	1 cut(s)	546
BseNI	ACTGG	2 cut(s)	591, 764
BseXI	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BseYI	CCCAGC	2 cut(s)	22, 410
BsiHKAI	GWGCWC	1 cut(s)	117
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	2 cut(s)	573, 833
BslI	CCNNNNNNNGG	2 cut(s)	362, 484
BsmAI	GTCTC	1 cut(s)	839
BsmFI	GGGAC	2 cut(s)	573, 833
BsmI	GAATGC	2 cut(s)	237, 548
Bso31I	GGTCTC	1 cut(s)	839
Bsp1286I	GDGCHC	1 cut(s)	117
Bsp143I	GATC	4 cut(s)	196, 540, 589, 616
Bsp19I	CCATGG	1 cut(s)	64
BspCNI	CTCAG	1 cut(s)	547
BspLI	GGNNCC	4 cut(s)	95, 591, 658, 821
BspMAI	CTGCAG	2 cut(s)	154, 778
BspMI	ACCTGC	1 cut(s)	475
BspPI	GGATC	4 cut(s)	191, 584, 597, 624
BspTNI	GGTCTC	1 cut(s)	839
BsrDI	GCAATG	1 cut(s)	192
BsrI	ACTGG	2 cut(s)	591, 764
BssECI	CCNNGG	3 cut(s)	64, 478, 736
BssMI	GATC	4 cut(s)	196, 540, 589, 616
BssNAI	GTATAC	1 cut(s)	177
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	2 cut(s)	64, 736
Bst1107I	GTATAC	1 cut(s)	177
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	479
Bst4CI	ACNGT	3 cut(s)	82, 286, 850
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	2 cut(s)	102, 555
BstDSI	CCRYGG	1 cut(s)	64
BstEII	GGTNACC	1 cut(s)	76
BstENI	CCTNNNNNAGG	2 cut(s)	360, 482
BstF5I	GGATG	1 cut(s)	748
BstKTI	GATC	4 cut(s)	199, 543, 592, 619
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	4 cut(s)	196, 540, 589, 616
BstMWI	GCNNNNNNNGC	6 cut(s)	121, 137, 234, 326, 776, 785
BstNI	CCWGG	1 cut(s)	479
BstNSI	RCATGY	1 cut(s)	280
BstPI	GGTNACC	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	477
BstSFI	CTRYAG	3 cut(s)	150, 282, 774
BstV1I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
BstX2I	RGATCY	2 cut(s)	589, 616
BstYI	RGATCY	2 cut(s)	589, 616
BstZ17I	GTATAC	1 cut(s)	177
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	748
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	162
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	1 cut(s)	378
CaiI	CAGNNNCTG	1 cut(s)	770
Cfr13I	GGNCC	3 cut(s)	93, 656, 820
Csp6I	GTAC	1 cut(s)	427
CviAII	CATG	9 cut(s)	43, 49, 65, 125, 277, 457, 538, 718, 808
CviQI	GTAC	1 cut(s)	427
DdeI	CTNAG	2 cut(s)	102, 555
DpnI	GATC	4 cut(s)	198, 542, 591, 618
DpnII	GATC	4 cut(s)	196, 540, 589, 616
DraI	TTTAAA	1 cut(s)	699
Ecl136II	GAGCTC	1 cut(s)	115
Eco130I	CCWWGG	2 cut(s)	64, 736
Eco24I	GRGCYC	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	839
Eco47I	GGWCC	3 cut(s)	93, 656, 820
Eco53kI	GAGCTC	1 cut(s)	115
Eco91I	GGTNACC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	115
EcoNI	CCTNNNNNAGG	2 cut(s)	360, 482
EcoO109I	RGGNCCY	3 cut(s)	93, 656, 820
EcoO65I	GGTNACC	1 cut(s)	76
EcoRII	CCWGG	1 cut(s)	477
EcoT14I	CCWWGG	2 cut(s)	64, 736
EcoT22I	ATGCAT	1 cut(s)	550
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	2 cut(s)	64, 736
FaeI	CATG	9 cut(s)	46, 52, 68, 128, 280, 460, 541, 721, 811
FaqI	GGGAC	2 cut(s)	573, 833
FatI	CATG	9 cut(s)	42, 48, 64, 124, 276, 456, 537, 717, 807
FbaI	TGATCA	1 cut(s)	540
FblI	GTMKAC	3 cut(s)	176, 273, 281
Fnu4HI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
FokI	GGATG	1 cut(s)	755
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
FspBI	CTAG	1 cut(s)	594
GluI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
GsaI	CCCAGC	2 cut(s)	26, 414
HapII	CCGG	1 cut(s)	258
Hin1II	CATG	9 cut(s)	46, 52, 68, 128, 280, 460, 541, 721, 811
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	3 cut(s)	52, 439, 667
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	4 cut(s)	177, 274, 282, 584
Hpy188I	TCNGA	2 cut(s)	196, 556
Hpy188III	TCNNGA	3 cut(s)	242, 605, 793
Hpy8I	GTNNAC	4 cut(s)	177, 274, 282, 584
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	4 cut(s)	210, 412, 790, 847
HpyCH4III	ACNGT	3 cut(s)	82, 286, 850
HpyCH4IV	ACGT	1 cut(s)	270
HpyCH4V	TGCA	9 cut(s)	140, 152, 171, 185, 407, 548, 632, 689, 776
HpyF10VI	GCNNNNNNNGC	6 cut(s)	121, 137, 234, 326, 776, 785
HpyF3I	CTNAG	2 cut(s)	102, 555
HpySE526I	ACGT	1 cut(s)	270
Hsp92II	CATG	9 cut(s)	46, 52, 68, 128, 280, 460, 541, 721, 811
Ksp22I	TGATCA	1 cut(s)	540
Kzo9I	GATC	4 cut(s)	196, 540, 589, 616
LmnI	GCTCC	3 cut(s)	121, 358, 497
Lsp1109I	GCAGC	6 cut(s)	164, 193, 419, 757, 760, 788
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	1 cut(s)	270
MaeIII	GTNAC	5 cut(s)	76, 107, 266, 338, 677
MalI	GATC	4 cut(s)	198, 542, 591, 618
MboI	GATC	4 cut(s)	196, 540, 589, 616
MboII	GAAGA	4 cut(s)	395, 475, 588, 593
MfeI	CAATTG	1 cut(s)	180
MflI	RGATCY	2 cut(s)	589, 616
MhlI	GDGCHC	1 cut(s)	117
MluCI	AATT	4 cut(s)	180, 321, 392, 627
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	6 cut(s)	107, 310, 424, 550, 778, 880
Mph1103I	ATGCAT	1 cut(s)	550
MroXI	GAANNNNTTC	2 cut(s)	438, 470
MseI	TTAA	4 cut(s)	162, 312, 450, 698
MslI	CAYNNNNRTG	1 cut(s)	47
MspA1I	CMGCKG	2 cut(s)	410, 836
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	1 cut(s)	479
MunI	CAATTG	1 cut(s)	180
Mva1269I	GAATGC	2 cut(s)	237, 548
MvaI	CCWGG	1 cut(s)	479
MwoI	GCNNNNNNNGC	6 cut(s)	121, 137, 234, 326, 776, 785
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	4 cut(s)	196, 540, 589, 616
NlaIII	CATG	9 cut(s)	46, 52, 68, 128, 280, 460, 541, 721, 811
NlaIV	GGNNCC	4 cut(s)	95, 591, 658, 821
NmuCI	GTSAC	3 cut(s)	76, 107, 677
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	280
PciI	ACATGT	1 cut(s)	276
PctI	GAATGC	2 cut(s)	237, 548
PdmI	GAANNNNTTC	2 cut(s)	438, 470
PfeI	GAWTC	3 cut(s)	52, 439, 667
PkrI	GCNGC	6 cut(s)	154, 208, 409, 772, 775, 778
PpuMI	RGGWCCY	3 cut(s)	93, 656, 820
PscI	ACATGT	1 cut(s)	276
PshBI	ATTAAT	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	117
Psp5II	RGGWCCY	3 cut(s)	93, 656, 820
Psp6I	CCWGG	1 cut(s)	477
PspEI	GGTNACC	1 cut(s)	76
PspFI	CCCAGC	2 cut(s)	22, 410
PspGI	CCWGG	1 cut(s)	477
PspN4I	GGNNCC	4 cut(s)	95, 591, 658, 821
PspPI	GGNCC	3 cut(s)	93, 656, 820
PspPPI	RGGWCCY	3 cut(s)	93, 656, 820
PstI	CTGCAG	2 cut(s)	154, 778
PstNI	CAGNNNCTG	1 cut(s)	770
PsuI	RGATCY	2 cut(s)	589, 616
PvuII	CAGCTG	2 cut(s)	410, 836
RsaI	GTAC	1 cut(s)	428
RsaNI	GTAC	1 cut(s)	427
RseI	CAYNNNNRTG	1 cut(s)	47
SacI	GAGCTC	1 cut(s)	117
SalI	GTCGAC	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	162, 312, 450, 698
SatI	GCNGC	6 cut(s)	153, 207, 408, 771, 774, 777
Sau3AI	GATC	4 cut(s)	196, 540, 589, 616
Sau96I	GGNCC	3 cut(s)	93, 656, 820
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	117
SfaNI	GCATC	1 cut(s)	280
SfcI	CTRYAG	3 cut(s)	150, 282, 774
SinI	GGWCC	3 cut(s)	93, 656, 820
SmiMI	CAYNNNNRTG	1 cut(s)	47
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	180, 321, 392, 627
SspMI	CTAG	1 cut(s)	594
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	2 cut(s)	64, 736
TaaI	ACNGT	3 cut(s)	82, 286, 850
TaiI	ACGT	1 cut(s)	273
TaqI	TCGA	1 cut(s)	273
TasI	AATT	4 cut(s)	180, 321, 392, 627
TfiI	GAWTC	3 cut(s)	52, 439, 667
Tru1I	TTAA	4 cut(s)	162, 312, 450, 698
Tru9I	TTAA	4 cut(s)	162, 312, 450, 698
TscAI	CASTG	1 cut(s)	162
TseFI	GTSAC	3 cut(s)	76, 107, 677
TseI	GCWGC	6 cut(s)	152, 206, 407, 770, 773, 776
Tsp45I	GTSAC	3 cut(s)	76, 107, 677
TspDTI	ATGAA	3 cut(s)	65, 521, 759
TspRI	CASTG	1 cut(s)	162
VpaK11BI	GGWCC	3 cut(s)	93, 656, 820
VspI	ATTAAT	1 cut(s)	312
XagI	CCTNNNNNAGG	2 cut(s)	360, 482
XceI	RCATGY	1 cut(s)	280
XmiI	GTMKAC	3 cut(s)	176, 273, 281
XmnI	GAANNNNTTC	2 cut(s)	438, 470
XspI	CTAG	1 cut(s)	594
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.