Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0007043

Physical Location & Seq

Genomic Coordinates Reverse (-)

30242707 .. 30245575

Gene Structure 2869 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0294200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGCTGCAGTTGAAGATTTAGACATTGAAAGTGGAGGCAATACTAGTCAAGAAGATGCAGGCTTGGAGCTTCTTTGGAGCAAGAGACTCAAAAACAAATTCTTGAATAGTAATTTGGGGGTGTTTTTGAGTTCCGGTGAGTCAATTATGTGCAAACATGGCATTCAATCATCTAGGAGTTTGGAAAGATATGGCCAAGTTATGATTGAAAGTGGGGAGGTAAAGGTAGTAATGAATTCAGAAGAGAGTCGAGGGCATTTGAACCTTGCAGAAAAAACGTATGAGAATGAGAGGCACAGGAATACCAACTCTAGGAATGCTCTGAAGCCACCGCGACCTCCTAAAGGTCCAACACTCGATGCTGCTGATCAGAAGTTGGTTAGGGAGATCGTGGAGCTTGCTAGGAGAAAGCGTGCAAGAATTCAACAAATTAAGGCAGCAAAGAAGACGAAAGCAACCAAGTCATCATCTGTGCAAAGTGGCATATCTGCCATGATCATCACACTATTATTCTTCTGTGTCATAATATTTCAAGGTGTAAGCTCCACAACTGTTCCAAATATGAATACACAAGGGTCTCCAGAGCCAGCAGTTGAAACAGCTGGAGATTTAATTTTTCTTCATTACTCCCAAAGCACGATACCTCGTTCTAGCATTCAGAATTCTGTCAAAGACCAGGTTTCTCGTTCAGGTCCGGGTGAAAAGGTGATGAAGATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003858 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0016491 GO:0016614 GO:0016616 GO:0035064 GO:0042393 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0140030 GO:0140034

KEGG Pathways

Metabolic & Signaling

ko00630 ko00650 ko01100 ko01120 ko01200 map00630 map00650 map01100 map01120 map01200

Pfam Domains

Protein Families

NAD_binding_11 NAD_binding_2

Protein Analysis

239

Amino Acids

26.3

Weight (kDa)

9.54

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007043)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25530 AT3G25530 AT3G25530
fragaria_vesca	FvH4_3g21710 FvH4_3g21710 FvH4_3g21710
malus_domestica	MD14G1000800.v1.1
prunus_persica	Prupe.7G000400_v2.0.a1 Prupe.7G000400_v2.0.a1
pyrus_communis	pycom49g00040
rosa_chinensis	RchiOBHm_Chr3g0497571
rosa_laevigata	RLG00000022451
rosa_multiflora	Rmu_sc0000212.1_g000018
rosa_roxburghii	Rroxscaffold_6G00387920
rosa_rugosa	Rorug03G0294100 Rorug03G0294200 Rorug03G0294200 Rorug03G0294200 Rorug03G0294300 Rorug03G0294400
rosa_samantha	Rh3AG337600 Rh3BG376200 Rh3CG371900 Rh3DG372500
rosa_wichuraiana	Rw0G011450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	334
AciI	CCGC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	193
AcsI	RAATTY	4 cut(s)	98, 235, 420, 661
AcuI	CTGAAG	1 cut(s)	344
AfiI	CCNNNNNNNGG	2 cut(s)	312, 344
AgsI	TTSAA	9 cut(s)	14, 29, 106, 167, 209, 262, 425, 533, 596
AhlI	ACTAGT	1 cut(s)	44
AjnI	CCWGG	1 cut(s)	675
AjuI	GAANNNNNNNTTGG	2 cut(s)	98, 130
AluBI	AGCT	4 cut(s)	70, 397, 543, 602
AluI	AGCT	4 cut(s)	70, 397, 543, 602
Alw26I	GTCTC	2 cut(s)	79, 582
AoxI	GGCC	1 cut(s)	193
ApeKI	GCWGC	3 cut(s)	5, 362, 437
ApoI	RAATTY	4 cut(s)	98, 235, 420, 661
AspS9I	GGNCC	2 cut(s)	347, 692
AsuC2I	CCSGG	1 cut(s)	696
AsuHPI	GGTGA	3 cut(s)	149, 710, 718
AvaII	GGWCC	2 cut(s)	347, 692
BalI	TGGCCA	1 cut(s)	195
BbsI	GAAGAC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	349, 449
BciT130I	CCWGG	1 cut(s)	677
BclI	TGATCA	2 cut(s)	367, 495
BcnI	CCSGG	1 cut(s)	696
BcoDI	GTCTC	2 cut(s)	79, 582
BcuI	ACTAGT	1 cut(s)	44
BfaI	CTAG	5 cut(s)	45, 174, 312, 402, 651
BfmI	CTRYAG	1 cut(s)	6
BisI	GCNGC	3 cut(s)	6, 363, 438
BlsI	GCNGC	3 cut(s)	7, 364, 439
Bme1390I	CCNGG	2 cut(s)	677, 696
Bme18I	GGWCC	2 cut(s)	347, 692
BmgT120I	GGNCC	2 cut(s)	347, 692
BmrFI	CCNGG	2 cut(s)	677, 696
BmsI	GCATC	2 cut(s)	46, 349
BpiI	GAAGAC	1 cut(s)	452
BpmI	CTGGAG	2 cut(s)	564, 624
BpuMI	CCSGG	1 cut(s)	696
BsaI	GGTCTC	1 cut(s)	582
BsaWI	WCCGGW	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	397, 427
Bsc4I	CCNNNNNNNGG	2 cut(s)	312, 344
BseBI	CCWGG	1 cut(s)	677
BseLI	CCNNNNNNNGG	2 cut(s)	312, 344
BseXI	GCAGC	2 cut(s)	349, 449
Bsh1236I	CGCG	1 cut(s)	334
BshFI	GGCC	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	135, 695
BslI	CCNNNNNNNGG	2 cut(s)	312, 344
BsmAI	GTCTC	2 cut(s)	79, 582
BsmI	GAATGC	3 cut(s)	162, 322, 654
BsnI	GGCC	1 cut(s)	195
Bso31I	GGTCTC	1 cut(s)	582
Bsp143I	GATC	3 cut(s)	367, 387, 495
BspACI	CCGC	1 cut(s)	332
BspANI	GGCC	1 cut(s)	195
BspFNI	CGCG	1 cut(s)	334
BspMAI	CTGCAG	1 cut(s)	10
BspTNI	GGTCTC	1 cut(s)	582
BssMI	GATC	3 cut(s)	367, 387, 495
Bst2UI	CCWGG	1 cut(s)	677
Bst4CI	ACNGT	1 cut(s)	553
Bst6I	CTCTTC	1 cut(s)	237
BstC8I	GCNNGC	4 cut(s)	61, 399, 414, 588
BstENI	CCTNNNNNAGG	1 cut(s)	342
BstFNI	CGCG	1 cut(s)	334
BstKTI	GATC	3 cut(s)	370, 390, 498
BstMAI	GTCTC	2 cut(s)	79, 582
BstMBI	GATC	3 cut(s)	367, 387, 495
BstMWI	GCNNNNNNNGC	1 cut(s)	159
BstNI	CCWGG	1 cut(s)	677
BstSCI	CCNGG	2 cut(s)	675, 694
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	334
BstV1I	GCAGC	2 cut(s)	349, 449
BstV2I	GAAGAC	1 cut(s)	452
BsuRI	GGCC	1 cut(s)	195
Cac8I	GCNNGC	4 cut(s)	61, 399, 414, 588
Cfr13I	GGNCC	2 cut(s)	347, 692
CsiI	ACCWGGT	1 cut(s)	675
CviAII	CATG	2 cut(s)	158, 493
CviJI	RGCY	9 cut(s)	5, 63, 70, 195, 328, 397, 543, 586, 602
CviKI_1	RGCY	9 cut(s)	5, 63, 70, 195, 328, 397, 543, 586, 602
DpnI	GATC	3 cut(s)	369, 389, 497
DpnII	GATC	3 cut(s)	367, 387, 495
EaeI	YGGCCR	1 cut(s)	193
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
Eco31I	GGTCTC	1 cut(s)	582
Eco47I	GGWCC	2 cut(s)	347, 692
Eco57I	CTGAAG	1 cut(s)	344
EcoNI	CCTNNNNNAGG	1 cut(s)	342
EcoRI	GAATTC	3 cut(s)	235, 420, 661
EcoRII	CCWGG	1 cut(s)	675
FaeI	CATG	2 cut(s)	161, 496
FaiI	YATR	9 cut(s)	149, 159, 192, 203, 282, 485, 494, 524, 563
FatI	CATG	2 cut(s)	157, 492
FbaI	TGATCA	2 cut(s)	367, 495
Fnu4HI	GCNGC	3 cut(s)	6, 363, 438
Fsp4HI	GCNGC	3 cut(s)	6, 363, 438
FspBI	CTAG	5 cut(s)	45, 174, 312, 402, 651
GluI	GCNGC	3 cut(s)	6, 363, 438
GsuI	CTGGAG	2 cut(s)	564, 624
HaeIII	GGCC	1 cut(s)	195
HapII	CCGG	2 cut(s)	135, 695
Hin1II	CATG	2 cut(s)	161, 496
HinfI	GANTC	3 cut(s)	87, 140, 247
HpaII	CCGG	2 cut(s)	135, 695
HphI	GGTGA	3 cut(s)	149, 710, 718
Hpy188I	TCNGA	4 cut(s)	241, 324, 372, 660
Hpy188III	TCNNGA	3 cut(s)	50, 103, 581
HpyCH4III	ACNGT	1 cut(s)	553
HpyCH4IV	ACGT	1 cut(s)	278
HpyCH4V	TGCA	6 cut(s)	8, 59, 153, 269, 416, 475
HpyF10VI	GCNNNNNNNGC	1 cut(s)	159
HpySE526I	ACGT	1 cut(s)	278
Hsp92II	CATG	2 cut(s)	161, 496
Ksp22I	TGATCA	2 cut(s)	367, 495
Kzo9I	GATC	3 cut(s)	367, 387, 495
LmnI	GCTCC	4 cut(s)	67, 78, 394, 548
Lsp1109I	GCAGC	2 cut(s)	349, 449
LweI	GCATC	2 cut(s)	46, 349
MabI	ACCWGGT	1 cut(s)	675
MaeI	CTAG	5 cut(s)	45, 174, 312, 402, 651
MaeII	ACGT	1 cut(s)	278
MalI	GATC	3 cut(s)	369, 389, 497
MboI	GATC	3 cut(s)	367, 387, 495
MboII	GAAGA	6 cut(s)	26, 65, 254, 457, 505, 611
MlsI	TGGCCA	1 cut(s)	195
MluCI	AATT	8 cut(s)	98, 112, 144, 235, 420, 429, 612, 661
MluNI	TGGCCA	1 cut(s)	195
MlyI	GAGTC	3 cut(s)	81, 149, 256
MmeI	TCCRAC	1 cut(s)	374
MnlI	CCTC	6 cut(s)	29, 211, 245, 285, 348, 654
Mox20I	TGGCCA	1 cut(s)	195
MscI	TGGCCA	1 cut(s)	195
MseI	TTAA	2 cut(s)	432, 611
Msp20I	TGGCCA	1 cut(s)	195
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	135, 695
MspR9I	CCNGG	2 cut(s)	677, 696
Mva1269I	GAATGC	3 cut(s)	162, 322, 654
MvaI	CCWGG	1 cut(s)	677
MvnI	CGCG	1 cut(s)	334
MwoI	GCNNNNNNNGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	696
NdeII	GATC	3 cut(s)	367, 387, 495
NlaIII	CATG	2 cut(s)	161, 496
PctI	GAATGC	3 cut(s)	162, 322, 654
PkrI	GCNGC	3 cut(s)	7, 364, 439
PleI	GAGTC	3 cut(s)	81, 148, 255
PpsI	GAGTC	3 cut(s)	81, 148, 255
Psp6I	CCWGG	1 cut(s)	675
PspGI	CCWGG	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	347, 692
PstI	CTGCAG	1 cut(s)	10
PvuII	CAGCTG	1 cut(s)	602
SaqAI	TTAA	2 cut(s)	432, 611
SatI	GCNGC	3 cut(s)	6, 363, 438
Sau3AI	GATC	3 cut(s)	367, 387, 495
Sau96I	GGNCC	2 cut(s)	347, 692
SchI	GAGTC	3 cut(s)	81, 149, 256
ScrFI	CCNGG	2 cut(s)	677, 696
SexAI	ACCWGGT	1 cut(s)	675
SfaNI	GCATC	2 cut(s)	46, 349
SfcI	CTRYAG	1 cut(s)	6
SinI	GGWCC	2 cut(s)	347, 692
SpeI	ACTAGT	1 cut(s)	44
Sse9I	AATT	8 cut(s)	98, 112, 144, 235, 420, 429, 612, 661
SsiI	CCGC	1 cut(s)	332
SspI	AATATT	1 cut(s)	528
SspMI	CTAG	5 cut(s)	45, 174, 312, 402, 651
StyD4I	CCNGG	2 cut(s)	675, 694
TaaI	ACNGT	1 cut(s)	553
TaiI	ACGT	1 cut(s)	281
TaqI	TCGA	2 cut(s)	250, 357
TasI	AATT	8 cut(s)	98, 112, 144, 235, 420, 429, 612, 661
Tru1I	TTAA	2 cut(s)	432, 611
Tru9I	TTAA	2 cut(s)	432, 611
TseI	GCWGC	3 cut(s)	5, 362, 437
TspDTI	ATGAA	3 cut(s)	248, 578, 611
VpaK11BI	GGWCC	2 cut(s)	347, 692
XagI	CCTNNNNNAGG	1 cut(s)	342
XapI	RAATTY	4 cut(s)	98, 235, 420, 661
XspI	CTAG	5 cut(s)	45, 174, 312, 402, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.