DNA polymerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G50840 AT1G50840 AT3G20540 AT3G20540 |
| fragaria_vesca | FvH4_3g22230 |
| malus_domestica | MD11G1221900.v1.1 |
| prunus_persica | Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 |
| pyrus_communis | pycom11g19570 |
| rosa_chinensis | RchiOBHm_Chr5g0038301 |
| rosa_laevigata | RLG00000033845 |
| rosa_multiflora | Rmu_co8325491.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00042720 |
| rosa_rugosa | Rorug05G0171900 |
| rosa_samantha | Rh5AG259200 Rh5BG263000 Rh5CG295400 Rh5DG272000 |
| rosa_wichuraiana | Rw5G024260 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1199 |
| Acc16I | TGCGCA | 1 cut(s) | 510 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1466 |
| AccI | GTMKAC | 1 cut(s) | 2037 |
| AccIII | TCCGGA | 2 cut(s) | 448, 1957 |
| AciI | CCGC | 6 cut(s) | 339, 1132, 1153, 2242, 2296, 2996 |
| AclWI | GGATC | 7 cut(s) | 1019, 1370, 1956, 2299, 2510, 2523, 2578 |
| AcoI | YGGCCR | 3 cut(s) | 534, 852, 1584 |
| AcsI | RAATTY | 7 cut(s) | 289, 561, 993, 1004, 1811, 2263, 2335 |
| AcuI | CTGAAG | 5 cut(s) | 231, 336, 892, 1869, 1914 |
| AcvI | CACGTG | 1 cut(s) | 1190 |
| AcyI | GRCGYC | 1 cut(s) | 163 |
| AdeI | CACNNNGTG | 1 cut(s) | 530 |
| AfaI | GTAC | 5 cut(s) | 646, 1658, 2465, 2693, 2862 |
| AflIII | ACRYGT | 2 cut(s) | 1187, 2460 |
| AgeI | ACCGGT | 1 cut(s) | 703 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 3028 |
| AjnI | CCWGG | 6 cut(s) | 177, 239, 1465, 2329, 2524, 2661 |
| AleI | CACNNNNGTG | 1 cut(s) | 848 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 2197, 2229 |
| Alw21I | GWGCWC | 3 cut(s) | 1518, 2821, 3094 |
| Alw26I | GTCTC | 4 cut(s) | 170, 781, 1979, 2251 |
| Alw44I | GTGCAC | 1 cut(s) | 3090 |
| AlwI | GGATC | 7 cut(s) | 1019, 1370, 1956, 2299, 2510, 2523, 2578 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 363, 1466, 1874, 1994, 2237 |
| Ama87I | CYCGRG | 1 cut(s) | 2640 |
| Aor13HI | TCCGGA | 2 cut(s) | 448, 1957 |
| AoxI | GGCC | 8 cut(s) | 47, 534, 852, 1128, 1584, 1880, 2981, 3009 |
| ApaLI | GTGCAC | 1 cut(s) | 3090 |
| ApeKI | GCWGC | 8 cut(s) | 182, 695, 2114, 2324, 2843, 2873, 2944, 3107 |
| ApoI | RAATTY | 7 cut(s) | 289, 561, 993, 1004, 1811, 2263, 2335 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1190, 1222 |
| AsiGI | ACCGGT | 1 cut(s) | 703 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 723 |
| AspLEI | GCGC | 1 cut(s) | 511 |
| AspS9I | GGNCC | 8 cut(s) | 99, 518, 623, 923, 1129, 2293, 2956, 2981 |
| AsuC2I | CCSGG | 3 cut(s) | 1325, 2641, 2642 |
| AsuHPI | GGTGA | 3 cut(s) | 508, 824, 1523 |
| AsuII | TTCGAA | 2 cut(s) | 1020, 2764 |
| AsuNHI | GCTAGC | 1 cut(s) | 2810 |
| AvaI | CYCGRG | 1 cut(s) | 2640 |
| AvaII | GGWCC | 6 cut(s) | 99, 518, 623, 923, 2293, 2956 |
| AxyI | CCTNAGG | 1 cut(s) | 263 |
| BaeGI | GKGCMC | 2 cut(s) | 2785, 3094 |
| BalI | TGGCCA | 2 cut(s) | 536, 1586 |
| BamHI | GGATCC | 1 cut(s) | 2515 |
| BanII | GRGCYC | 1 cut(s) | 1518 |
| BauI | CACGAG | 1 cut(s) | 2805 |
| BbrPI | CACGTG | 1 cut(s) | 1190 |
| BbsI | GAAGAC | 2 cut(s) | 84, 596 |
| Bbv12I | GWGCWC | 3 cut(s) | 1518, 2821, 3094 |
| BbvI | GCAGC | 8 cut(s) | 169, 682, 2101, 2311, 2830, 2860, 2931, 3094 |
| BccI | CCATC | 9 cut(s) | 509, 971, 1286, 1295, 1445, 1522, 1784, 1964, 2992 |
| BceAI | ACGGC | 1 cut(s) | 2799 |
| BciT130I | CCWGG | 6 cut(s) | 179, 241, 1467, 2331, 2526, 2663 |
| BciVI | GTATCC | 1 cut(s) | 2554 |
| BcnI | CCSGG | 3 cut(s) | 1325, 2641, 2642 |
| BcoDI | GTCTC | 4 cut(s) | 170, 781, 1979, 2251 |
| BfaI | CTAG | 9 cut(s) | 96, 134, 231, 483, 627, 1565, 2253, 2774, 2811 |
| BfmI | CTRYAG | 2 cut(s) | 465, 882 |
| BfuI | GTATCC | 1 cut(s) | 2554 |
| BglII | AGATCT | 2 cut(s) | 721, 1923 |
| BisI | GCNGC | 9 cut(s) | 183, 339, 696, 2115, 2325, 2844, 2874, 2945, 3108 |
| BlsI | GCNGC | 9 cut(s) | 184, 340, 697, 2116, 2326, 2845, 2875, 2946, 3109 |
| BmcAI | AGTACT | 1 cut(s) | 646 |
| Bme1390I | CCNGG | 9 cut(s) | 179, 241, 1325, 1467, 2331, 2526, 2641, 2642, 2663 |
| Bme18I | GGWCC | 6 cut(s) | 99, 518, 623, 923, 2293, 2956 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 3028 |
| BmeT110I | CYCGRG | 1 cut(s) | 2640 |
| BmgT120I | GGNCC | 8 cut(s) | 99, 518, 623, 923, 1129, 2293, 2956, 2981 |
| BmiI | GGNNCC | 3 cut(s) | 101, 1471, 2517 |
| BmrFI | CCNGG | 9 cut(s) | 179, 241, 1325, 1467, 2331, 2526, 2641, 2642, 2663 |
| BmrI | ACTGGG | 2 cut(s) | 2247, 2537 |
| BmtI | GCTAGC | 1 cut(s) | 2814 |
| BmuI | ACTGGG | 2 cut(s) | 2247, 2537 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1728 |
| BpiI | GAAGAC | 2 cut(s) | 84, 596 |
| BpmI | CTGGAG | 4 cut(s) | 262, 1711, 2610, 2841 |
| Bpu14I | TTCGAA | 2 cut(s) | 1020, 2764 |
| BpuEI | CTTGAG | 3 cut(s) | 64, 2428, 2528 |
| BpuMI | CCSGG | 3 cut(s) | 1325, 2641, 2642 |
| BsaAI | YACGTR | 1 cut(s) | 1190 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1455 |
| BsaHI | GRCGYC | 1 cut(s) | 163 |
| BsaI | GGTCTC | 1 cut(s) | 2251 |
| BsaJI | CCNNGG | 3 cut(s) | 570, 1358, 2640 |
| BsaWI | WCCGGW | 3 cut(s) | 448, 703, 1957 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1412, 1442 |
| Bse118I | RCCGGY | 1 cut(s) | 703 |
| Bse1I | ACTGG | 9 cut(s) | 357, 1502, 1728, 1879, 2242, 2543, 2627, 2858, 3104 |
| Bse21I | CCTNAGG | 1 cut(s) | 263 |
| Bse3DI | GCAATG | 4 cut(s) | 2109, 2460, 2607, 2768 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1455 |
| BseAI | TCCGGA | 2 cut(s) | 448, 1957 |
| BseBI | CCWGG | 6 cut(s) | 179, 241, 1467, 2331, 2526, 2663 |
| BseDI | CCNNGG | 3 cut(s) | 570, 1358, 2640 |
| BseGI | GGATG | 9 cut(s) | 457, 807, 973, 1631, 2101, 2160, 2419, 2671, 3054 |
| BseJI | GATNNNNATC | 1 cut(s) | 1455 |
| BseMI | GCAATG | 4 cut(s) | 2109, 2460, 2607, 2768 |
| BseMII | CTCAG | 6 cut(s) | 181, 240, 254, 1527, 1848, 2565 |
| BseNI | ACTGG | 9 cut(s) | 357, 1502, 1728, 1879, 2242, 2543, 2627, 2858, 3104 |
| BseRI | GAGGAG | 3 cut(s) | 7, 1241, 1361 |
| BseSI | GKGCMC | 2 cut(s) | 2785, 3094 |
| BseXI | GCAGC | 8 cut(s) | 169, 682, 2101, 2311, 2830, 2860, 2931, 3094 |
| BsgI | GTGCAG | 2 cut(s) | 1814, 2310 |
| BshFI | GGCC | 8 cut(s) | 49, 536, 854, 1130, 1586, 1882, 2983, 3011 |
| BshTI | ACCGGT | 1 cut(s) | 703 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1518, 2821, 3094 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2640 |
| BsiSI | CCGG | 5 cut(s) | 449, 704, 1325, 1958, 2641 |
| BslFI | GGGAC | 3 cut(s) | 85, 1225, 1720 |
| BsmAI | GTCTC | 4 cut(s) | 170, 781, 1979, 2251 |
| BsmBI | CGTCTC | 1 cut(s) | 170 |
| BsmFI | GGGAC | 3 cut(s) | 85, 1225, 1720 |
| BsmI | GAATGC | 2 cut(s) | 1548, 2069 |
| BsnI | GGCC | 8 cut(s) | 49, 536, 854, 1130, 1586, 1882, 2983, 3011 |
| Bso31I | GGTCTC | 1 cut(s) | 2251 |
| BsoBI | CYCGRG | 1 cut(s) | 2640 |
| Bsp119I | TTCGAA | 2 cut(s) | 1020, 2764 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1518, 2785, 2821, 3094 |
| Bsp13I | TCCGGA | 2 cut(s) | 448, 1957 |
| Bsp19I | CCATGG | 1 cut(s) | 1358 |
| BspACI | CCGC | 6 cut(s) | 339, 1132, 1153, 2242, 2296, 2996 |
| BspANI | GGCC | 8 cut(s) | 49, 536, 854, 1130, 1586, 1882, 2983, 3011 |
| BspCNI | CTCAG | 6 cut(s) | 180, 241, 255, 1528, 1849, 2566 |
| BspEI | TCCGGA | 2 cut(s) | 448, 1957 |
| BspLI | GGNNCC | 3 cut(s) | 101, 1471, 2517 |
| BspOI | GCTAGC | 1 cut(s) | 2814 |
| BspPI | GGATC | 7 cut(s) | 1019, 1370, 1956, 2299, 2510, 2523, 2578 |
| BspQI | GCTCTTC | 1 cut(s) | 1743 |
| BspT104I | TTCGAA | 2 cut(s) | 1020, 2764 |
| BspTNI | GGTCTC | 1 cut(s) | 2251 |
| BsrDI | GCAATG | 4 cut(s) | 2109, 2460, 2607, 2768 |
| BsrFI | RCCGGY | 1 cut(s) | 703 |
| BsrI | ACTGG | 9 cut(s) | 357, 1502, 1728, 1879, 2242, 2543, 2627, 2858, 3104 |
| BssAI | RCCGGY | 1 cut(s) | 703 |
| BssECI | CCNNGG | 3 cut(s) | 570, 1358, 2640 |
| BssNI | GRCGYC | 1 cut(s) | 163 |
| BssSI | CACGAG | 1 cut(s) | 2805 |
| BssT1I | CCWWGG | 2 cut(s) | 570, 1358 |
| Bst2BI | CACGAG | 1 cut(s) | 2805 |
| Bst2UI | CCWGG | 6 cut(s) | 179, 241, 1467, 2331, 2526, 2663 |
| Bst4CI | ACNGT | 8 cut(s) | 365, 431, 649, 1711, 1780, 1990, 2399, 2680 |
| Bst6I | CTCTTC | 3 cut(s) | 1743, 1933, 2010 |
| BstACI | GRCGYC | 1 cut(s) | 163 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1382, 2321 |
| BstBAI | YACGTR | 1 cut(s) | 1190 |
| BstBI | TTCGAA | 2 cut(s) | 1020, 2764 |
| BstDEI | CTNAG | 8 cut(s) | 167, 249, 263, 1519, 1536, 1857, 2372, 2574 |
| BstDSI | CCRYGG | 1 cut(s) | 1358 |
| BstF5I | GGATG | 9 cut(s) | 457, 807, 973, 1631, 2101, 2160, 2419, 2671, 3054 |
| BstHHI | GCGC | 1 cut(s) | 511 |
| BstMAI | GTCTC | 4 cut(s) | 170, 781, 1979, 2251 |
| BstNI | CCWGG | 6 cut(s) | 179, 241, 1467, 2331, 2526, 2663 |
| BstNSI | RCATGY | 3 cut(s) | 2410, 2464, 3031 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1728 |
| BstSCI | CCNGG | 9 cut(s) | 177, 239, 1323, 1465, 2329, 2524, 2639, 2640, 2661 |
| BstSFI | CTRYAG | 2 cut(s) | 465, 882 |
| BstSLI | GKGCMC | 2 cut(s) | 2785, 3094 |
| BstV1I | GCAGC | 8 cut(s) | 169, 682, 2101, 2311, 2830, 2860, 2931, 3094 |
| BstV2I | GAAGAC | 2 cut(s) | 84, 596 |
| BstX2I | RGATCY | 7 cut(s) | 721, 1024, 1362, 1923, 2304, 2515, 2570 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1126 |
| BstYI | RGATCY | 7 cut(s) | 721, 1024, 1362, 1923, 2304, 2515, 2570 |
| Bsu36I | CCTNAGG | 1 cut(s) | 263 |
| BsuI | GTATCC | 1 cut(s) | 2554 |
| BsuRI | GGCC | 8 cut(s) | 49, 536, 854, 1130, 1586, 1882, 2983, 3011 |
| BtgI | CCRYGG | 1 cut(s) | 1358 |
| BtsCI | GGATG | 9 cut(s) | 457, 807, 973, 1631, 2101, 2160, 2419, 2671, 3054 |
| BtsI | GCAGTG | 1 cut(s) | 1445 |
| BtsIMutI | CAGTG | 5 cut(s) | 1296, 1445, 1770, 1785, 1995 |
| CaiI | CAGNNNCTG | 5 cut(s) | 363, 1466, 1874, 1994, 2237 |
| CfoI | GCGC | 1 cut(s) | 511 |
| Cfr10I | RCCGGY | 1 cut(s) | 703 |
| Cfr13I | GGNCC | 8 cut(s) | 99, 518, 623, 923, 1129, 2293, 2956, 2981 |
| Cfr9I | CCCGGG | 1 cut(s) | 2640 |
| CseI | GACGC | 2 cut(s) | 152, 1222 |
| CsiI | ACCWGGT | 1 cut(s) | 2524 |
| Csp6I | GTAC | 5 cut(s) | 645, 1657, 2464, 2692, 2861 |
| CspAI | ACCGGT | 1 cut(s) | 703 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2410, 2445 |
| CviQI | GTAC | 5 cut(s) | 645, 1657, 2464, 2692, 2861 |
| DdeI | CTNAG | 8 cut(s) | 167, 249, 263, 1519, 1536, 1857, 2372, 2574 |
| DraIII | CACNNNGTG | 1 cut(s) | 530 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1199 |
| DriI | GACNNNNNGTC | 1 cut(s) | 3028 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1199 |
| EaeI | YGGCCR | 3 cut(s) | 534, 852, 1584 |
| Eam1104I | CTCTTC | 3 cut(s) | 1743, 1933, 2010 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 3028 |
| EarI | CTCTTC | 3 cut(s) | 1743, 1933, 2010 |
| Ecl136II | GAGCTC | 1 cut(s) | 1516 |
| Eco130I | CCWWGG | 2 cut(s) | 570, 1358 |
| Eco147I | AGGCCT | 1 cut(s) | 49 |
| Eco24I | GRGCYC | 1 cut(s) | 1518 |
| Eco31I | GGTCTC | 1 cut(s) | 2251 |
| Eco32I | GATATC | 4 cut(s) | 1251, 1562, 2151, 2907 |
| Eco47I | GGWCC | 6 cut(s) | 99, 518, 623, 923, 2293, 2956 |
| Eco53kI | GAGCTC | 1 cut(s) | 1516 |
| Eco57I | CTGAAG | 5 cut(s) | 231, 336, 892, 1869, 1914 |
| Eco72I | CACGTG | 1 cut(s) | 1190 |
| Eco81I | CCTNAGG | 1 cut(s) | 263 |
| Eco88I | CYCGRG | 1 cut(s) | 2640 |
| EcoICRI | GAGCTC | 1 cut(s) | 1516 |
| EcoO109I | RGGNCCY | 1 cut(s) | 99 |
| EcoRII | CCWGG | 6 cut(s) | 177, 239, 1465, 2329, 2524, 2661 |
| EcoRV | GATATC | 4 cut(s) | 1251, 1562, 2151, 2907 |
| EcoT14I | CCWWGG | 2 cut(s) | 570, 1358 |
| EcoT38I | GRGCYC | 1 cut(s) | 1518 |
| ErhI | CCWWGG | 2 cut(s) | 570, 1358 |
| Esp3I | CGTCTC | 1 cut(s) | 170 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2490, 2522 |
| FaqI | GGGAC | 3 cut(s) | 85, 1225, 1720 |
| FauI | CCCGC | 1 cut(s) | 1139 |
| FauNDI | CATATG | 1 cut(s) | 2614 |
| FblI | GTMKAC | 1 cut(s) | 2037 |
| Fnu4HI | GCNGC | 9 cut(s) | 183, 339, 696, 2115, 2325, 2844, 2874, 2945, 3108 |
| FokI | GGATG | 9 cut(s) | 464, 814, 980, 1618, 2108, 2147, 2426, 2678, 3041 |
| FriOI | GRGCYC | 1 cut(s) | 1518 |
| Fsp4HI | GCNGC | 9 cut(s) | 183, 339, 696, 2115, 2325, 2844, 2874, 2945, 3108 |
| FspAI | RTGCGCAY | 1 cut(s) | 510 |
| FspBI | CTAG | 9 cut(s) | 96, 134, 231, 483, 627, 1565, 2253, 2774, 2811 |
| FspI | TGCGCA | 1 cut(s) | 510 |
| GlaI | GCGC | 1 cut(s) | 510 |
| GluI | GCNGC | 9 cut(s) | 183, 339, 696, 2115, 2325, 2844, 2874, 2945, 3108 |
| GsuI | CTGGAG | 4 cut(s) | 262, 1711, 2610, 2841 |
| HaeIII | GGCC | 8 cut(s) | 49, 536, 854, 1130, 1586, 1882, 2983, 3011 |
| HapII | CCGG | 5 cut(s) | 449, 704, 1325, 1958, 2641 |
| HgaI | GACGC | 2 cut(s) | 152, 1222 |
| HhaI | GCGC | 1 cut(s) | 511 |
| Hin1I | GRCGYC | 1 cut(s) | 163 |
| Hin6I | GCGC | 1 cut(s) | 509 |
| HinP1I | GCGC | 1 cut(s) | 509 |
| HincII | GTYRAC | 2 cut(s) | 3022, 3067 |
| HindII | GTYRAC | 2 cut(s) | 3022, 3067 |
| HindIII | AAGCTT | 1 cut(s) | 1400 |
| HpaII | CCGG | 5 cut(s) | 449, 704, 1325, 1958, 2641 |
| HphI | GGTGA | 3 cut(s) | 508, 824, 1523 |
| Hpy166II | GTNNAC | 7 cut(s) | 418, 427, 1714, 2038, 3022, 3067, 3092 |
| Hpy8I | GTNNAC | 7 cut(s) | 418, 427, 1714, 2038, 3022, 3067, 3092 |
| HpyCH4III | ACNGT | 8 cut(s) | 365, 431, 649, 1711, 1780, 1990, 2399, 2680 |
| HpyCH4IV | ACGT | 3 cut(s) | 1189, 1665, 2731 |
| HpyF3I | CTNAG | 8 cut(s) | 167, 249, 263, 1519, 1536, 1857, 2372, 2574 |
| HpySE526I | ACGT | 3 cut(s) | 1189, 1665, 2731 |
| Hsp92I | GRCGYC | 1 cut(s) | 163 |
| HspAI | GCGC | 1 cut(s) | 509 |
| Kpn2I | TCCGGA | 2 cut(s) | 448, 1957 |
| LguI | GCTCTTC | 1 cut(s) | 1743 |
| LmnI | GCTCC | 3 cut(s) | 1468, 1810, 1960 |
| Lsp1109I | GCAGC | 8 cut(s) | 169, 682, 2101, 2311, 2830, 2860, 2931, 3094 |
| MabI | ACCWGGT | 1 cut(s) | 2524 |
| MaeI | CTAG | 9 cut(s) | 96, 134, 231, 483, 627, 1565, 2253, 2774, 2811 |
| MaeII | ACGT | 3 cut(s) | 1189, 1665, 2731 |
| MaeIII | GTNAC | 6 cut(s) | 359, 379, 839, 1166, 1190, 1990 |
| MfeI | CAATTG | 2 cut(s) | 333, 1836 |
| MflI | RGATCY | 7 cut(s) | 721, 1024, 1362, 1923, 2304, 2515, 2570 |
| MhlI | GDGCHC | 4 cut(s) | 1518, 2785, 2821, 3094 |
| MlsI | TGGCCA | 2 cut(s) | 536, 1586 |
| MluNI | TGGCCA | 2 cut(s) | 536, 1586 |
| MlyI | GAGTC | 4 cut(s) | 103, 221, 1718, 2084 |
| MmeI | TCCRAC | 4 cut(s) | 545, 2178, 2391, 2880 |
| Mox20I | TGGCCA | 2 cut(s) | 536, 1586 |
| MroI | TCCGGA | 2 cut(s) | 448, 1957 |
| MroXI | GAANNNNTTC | 1 cut(s) | 723 |
| MscI | TGGCCA | 2 cut(s) | 536, 1586 |
| MslI | CAYNNNNRTG | 7 cut(s) | 800, 837, 848, 962, 1124, 1664, 2475 |
| Msp20I | TGGCCA | 2 cut(s) | 536, 1586 |
| MspA1I | CMGCKG | 3 cut(s) | 341, 2365, 2996 |
| MspI | CCGG | 5 cut(s) | 449, 704, 1325, 1958, 2641 |
| MspR9I | CCNGG | 9 cut(s) | 179, 241, 1325, 1467, 2331, 2526, 2641, 2642, 2663 |
| MunI | CAATTG | 2 cut(s) | 333, 1836 |
| Mva1269I | GAATGC | 2 cut(s) | 1548, 2069 |
| MvaI | CCWGG | 6 cut(s) | 179, 241, 1467, 2331, 2526, 2663 |
| NciI | CCSGG | 3 cut(s) | 1325, 2641, 2642 |
| NcoI | CCATGG | 1 cut(s) | 1358 |
| NdeI | CATATG | 1 cut(s) | 2614 |
| NheI | GCTAGC | 1 cut(s) | 2810 |
| NlaIV | GGNNCC | 3 cut(s) | 101, 1471, 2517 |
| NmeAIII | GCCGAG | 1 cut(s) | 880 |
| NmuCI | GTSAC | 3 cut(s) | 839, 1190, 1990 |
| NsbI | TGCGCA | 1 cut(s) | 510 |
| NspI | RCATGY | 3 cut(s) | 2410, 2464, 3031 |
| NspV | TTCGAA | 2 cut(s) | 1020, 2764 |
| OliI | CACNNNNGTG | 1 cut(s) | 848 |
| PceI | AGGCCT | 1 cut(s) | 49 |
| PciI | ACATGT | 1 cut(s) | 2460 |
| PciSI | GCTCTTC | 1 cut(s) | 1743 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2812 |
| PctI | GAATGC | 2 cut(s) | 1548, 2069 |
| PdmI | GAANNNNTTC | 1 cut(s) | 723 |
| PfeI | GAWTC | 9 cut(s) | 617, 686, 1142, 1976, 2141, 2206, 2272, 2377, 2990 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1466 |
| PfoI | TCCNGGA | 2 cut(s) | 1465, 2661 |
| PinAI | ACCGGT | 1 cut(s) | 703 |
| PkrI | GCNGC | 9 cut(s) | 184, 340, 697, 2116, 2326, 2845, 2875, 2946, 3109 |
| PleI | GAGTC | 4 cut(s) | 103, 221, 1718, 2083 |
| PmaCI | CACGTG | 1 cut(s) | 1190 |
| PmlI | CACGTG | 1 cut(s) | 1190 |
| PpsI | GAGTC | 4 cut(s) | 103, 221, 1718, 2083 |
| Ppu21I | YACGTR | 1 cut(s) | 1190 |
| PpuMI | RGGWCCY | 1 cut(s) | 99 |
| PscI | ACATGT | 1 cut(s) | 2460 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1728 |
| Psp124BI | GAGCTC | 1 cut(s) | 1518 |
| Psp5II | RGGWCCY | 1 cut(s) | 99 |
| Psp6I | CCWGG | 6 cut(s) | 177, 239, 1465, 2329, 2524, 2661 |
| PspCI | CACGTG | 1 cut(s) | 1190 |
| PspGI | CCWGG | 6 cut(s) | 177, 239, 1465, 2329, 2524, 2661 |
| PspN4I | GGNNCC | 3 cut(s) | 101, 1471, 2517 |
| PspPI | GGNCC | 8 cut(s) | 99, 518, 623, 923, 1129, 2293, 2956, 2981 |
| PspPPI | RGGWCCY | 1 cut(s) | 99 |
| PstNI | CAGNNNCTG | 5 cut(s) | 363, 1466, 1874, 1994, 2237 |
| PsuI | RGATCY | 7 cut(s) | 721, 1024, 1362, 1923, 2304, 2515, 2570 |
| PvuII | CAGCTG | 1 cut(s) | 2365 |
| RsaI | GTAC | 5 cut(s) | 646, 1658, 2465, 2693, 2862 |
| RsaNI | GTAC | 5 cut(s) | 645, 1657, 2464, 2692, 2861 |
| RseI | CAYNNNNRTG | 7 cut(s) | 800, 837, 848, 962, 1124, 1664, 2475 |
| SacI | GAGCTC | 1 cut(s) | 1518 |
| SapI | GCTCTTC | 1 cut(s) | 1743 |
| SatI | GCNGC | 9 cut(s) | 183, 339, 696, 2115, 2325, 2844, 2874, 2945, 3108 |
| Sau96I | GGNCC | 8 cut(s) | 99, 518, 623, 923, 1129, 2293, 2956, 2981 |
| ScaI | AGTACT | 1 cut(s) | 646 |
| SchI | GAGTC | 4 cut(s) | 103, 221, 1718, 2084 |
| ScrFI | CCNGG | 9 cut(s) | 179, 241, 1325, 1467, 2331, 2526, 2641, 2642, 2663 |
| SduI | GDGCHC | 4 cut(s) | 1518, 2785, 2821, 3094 |
| SexAI | ACCWGGT | 1 cut(s) | 2524 |
| SfcI | CTRYAG | 2 cut(s) | 465, 882 |
| SfuI | TTCGAA | 2 cut(s) | 1020, 2764 |
| SinI | GGWCC | 6 cut(s) | 99, 518, 623, 923, 2293, 2956 |
| SmaI | CCCGGG | 1 cut(s) | 2642 |
| SmiMI | CAYNNNNRTG | 7 cut(s) | 800, 837, 848, 962, 1124, 1664, 2475 |
| SmlI | CTYRAG | 3 cut(s) | 43, 2443, 2507 |
| SmoI | CTYRAG | 3 cut(s) | 43, 2443, 2507 |
| SseBI | AGGCCT | 1 cut(s) | 49 |
| SsiI | CCGC | 6 cut(s) | 339, 1132, 1153, 2242, 2296, 2996 |
| SspI | AATATT | 2 cut(s) | 1266, 2003 |
| SspMI | CTAG | 9 cut(s) | 96, 134, 231, 483, 627, 1565, 2253, 2774, 2811 |
| SstI | GAGCTC | 1 cut(s) | 1518 |
| StuI | AGGCCT | 1 cut(s) | 49 |
| StyD4I | CCNGG | 9 cut(s) | 177, 239, 1323, 1465, 2329, 2524, 2639, 2640, 2661 |
| StyI | CCWWGG | 2 cut(s) | 570, 1358 |
| TaaI | ACNGT | 8 cut(s) | 365, 431, 649, 1711, 1780, 1990, 2399, 2680 |
| TaiI | ACGT | 3 cut(s) | 1192, 1668, 2734 |
| TaqI | TCGA | 6 cut(s) | 1020, 1148, 1176, 1555, 2073, 2764 |
| TatI | WGTACW | 3 cut(s) | 644, 1656, 2860 |
| TauI | GCSGC | 1 cut(s) | 341 |
| TfiI | GAWTC | 9 cut(s) | 617, 686, 1142, 1976, 2141, 2206, 2272, 2377, 2990 |
| TscAI | CASTG | 5 cut(s) | 1303, 1445, 1777, 1785, 1995 |
| TseFI | GTSAC | 3 cut(s) | 839, 1190, 1990 |
| TseI | GCWGC | 8 cut(s) | 182, 695, 2114, 2324, 2843, 2873, 2944, 3107 |
| Tsp45I | GTSAC | 3 cut(s) | 839, 1190, 1990 |
| TspGWI | ACGGA | 2 cut(s) | 2218, 2297 |
| TspMI | CCCGGG | 1 cut(s) | 2640 |
| TspRI | CASTG | 5 cut(s) | 1303, 1445, 1777, 1785, 1995 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1466 |
| VneI | GTGCAC | 1 cut(s) | 3090 |
| VpaK11BI | GGWCC | 6 cut(s) | 99, 518, 623, 923, 2293, 2956 |
| XapI | RAATTY | 7 cut(s) | 289, 561, 993, 1004, 1811, 2263, 2335 |
| XbaI | TCTAGA | 2 cut(s) | 133, 230 |
| XceI | RCATGY | 3 cut(s) | 2410, 2464, 3031 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1697 |
| XmaI | CCCGGG | 1 cut(s) | 2640 |
| XmiI | GTMKAC | 1 cut(s) | 2037 |
| XmnI | GAANNNNTTC | 1 cut(s) | 723 |
| XspI | CTAG | 9 cut(s) | 96, 134, 231, 483, 627, 1565, 2253, 2774, 2811 |
| ZrmI | AGTACT | 1 cut(s) | 646 |