Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0011243

Physical Location & Seq

Genomic Coordinates Reverse (-)

33823922 .. 33832805

Gene Structure 8884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG259200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGGCTATGGGGTTCTCCTCCTTCCAGACCAGCCATTTGAGGCCTTGCCCTTCTTATTTCTCTTTATTACGGGCTTGTCCTCTGTCTTCTTCGTCTTCTAGGTCCCTATGGACTCCTTCAGTTTCAAGGCGAGTTTTGGATTGCAAGCCAGAGGTCTATGTTGGGCGCCTAAGGGGTGTCCAGGCTGCCAAATCATATAATACTTTGACCTCTGAAGGAAAATCCAACGACTCTAGATATGCCTGGAGAGCTGCGGTTACTCGCCTGAGGAAAGAAAAACAAGAAGTGGAAAGTTCTTACAGAAGTAAGACATACTCTGAAGGAAATATAAAAACGATTACCCCTGAAAAGGTTGATAACAGTAGCTATGAGATGGGGGAGGTAACTTTATATGTGTCACATGGTGAAGGAAGTAATGTGGACAGAGTAAACGGTTATGCACACGATAATCCAGACGTAGTAGCTTCTGTAGGAATTGACAATCCTAGTGTGGAAAAGGTGAATGGTTATGCACATGATGGTCCAAGACTGGGTGTGGCTACGCCACCCAGATCAGGGAAGGAAGTTAAGTCCAAGGGGCCATTATTGGGGAAGACCTCAAAGGTCAGGAAAGGGATTGATTCTGGACCTAGTAAAGATGAAGCCGGTAATGTGATGAACAGGGACAAGTCTGATGTAAAATCTTCTGAATCTAAAGCTGCTACACCAGTACATAGTAAGGAAGATCTTCGCAAGACACTTAATAACATTTACGACAAAGTTCTCATTGTCAATAGTGTCTCTATTGCAAAGAAAGTCGTTAGGATGCTTAGAGGTGAATATAGGCATCTTGTCCATGCCTGTGACACAGAGGTGGCCGAGATAGATGTTAAGAAAGAAACACCTGTAGATCATGGACAGATAATATGCTTCAGTATATATTCTGGACCAGATGTGGATTTTGGAAATGGAAAGTCCTGCATCTGGGTGGATGTTCTTGATGGCGGCGGCAAGGAACTTCTACTTGAATTTGCTCCATTTTTTGAAGATCCCTCCATTAAAAAGGTTTGGCACAATTATAGCTTTGATAACCATGTAATTGAGAACTATGGGTTTAAGGTTTCTGGCTTTCATGCCGACACCATGCACATGGCCCGCTTGTGGGATTCATCAAGGCGGTTAAAGGGTGGTTACTCTCTTGAAGCTCTAACACATGACCCAAAGGTCATGTCTGGGGCACCATCATGTGAGGAGAATGACTTGATTGGTAAGATATCAATGAAGACAATATTTGGCAGAAAGAAATTGAAAAAAGATGGTACCGATGGGAAAATAACAATCCTTGACCCAGTTGAAGTGCTACAAAGAGAGGAGAGAAAACCATGGATCTGTTATTCTGCGTTAGATGCAATAAGCACACTAAAGCTATATGAGAGTATGAAAAACCAACTCTCCAATAGGCAGTGGGAAATTGATGGAAATCCAGCTCCTGGAACCATGTTTGATTTCTATAAAAAATACTGGCGACCATTTGGCGAGCTCTTAGTTCAGATGGAAACTGAGGGAATGCTGGTTGATCGAGGATATCTAGCTGAAATTGAGAAGTTAGCCAAATCAGAACAAGAGGTTGCTGTGAATAGATTTCGCAAGTGGGCTTCCAGCTTTTGCCCTGATGCTAAGTACATGAATGTGGGAAGTGATGTGCAACTACGCCAGCTTTTATTTGGTGGGACTGTGAACAGCAAGGACTCGAATCAGGCTCTTCCAAATGAGAGGACTTTTAGAGTTCCAAACACTGATAAAGTGATTGAAGAAGGCAAAAGTACAGCTCCAAAATTTCGCAATATCACTCTGCAGACAATTGGTGTCAATCTGCCAACTGAGATTTACACAGCAACTGGTTGGCCTTCAGTTAGCGGAGATGCTTTGAAGATTTTAGCTGGCAAGATCTCTTCAGAGTATGATTTTATGGATCCCGCTCCTGATATGGAGCCTGTTGATGATGGAGATTCTTGTGAGACAGTGAGTGATGAATACTTGGGAAAAGAAGAGATTATCTCTGAAAATCTTGACAGGTCTGACTATGGAACAGCTTTGCAAGCATTCAAGTCAGAGGAGAAGGGGAAGGAAGCTTGCCAAGCCATTGCTGCATTATGTCAAGTTTGCTCTATTGATTCTTTGATATCCAACTTCATCCTCCCTTTGCAGGGCAGTAATATAGCTGGCAAAAACAGACGAATTCATTGTTCACTAAATATCAACACAGAAACTGGGCGGTTATCTGCTAGGCGACCAAATTTGCAGAATCAACCAGCTCTTGAAAAGGACCGGTATAAGATCCGCCAGGCATTTGTAGCTGCACCTGGAAATTCTCTCATTGTTGCTGACTATGGACAGCTGGAACTTAGGATTCTTGCTCATCTTTCTAACTGTAAGAGCATGTTGGATGCCTTCAAAGCTGGTGGGGATTTCCATTCAAGGACTGCAATGAACATGTACCAGCATATTCGTGAAGCTGTTGAGAAAAAGGAAGTGCTACTTGAGTGGGATCCTCAACCTGGTCAGGATAAACCCCCAGTTCCAATGTTGAAGGATACCTACGGATCTGAGAGAAGGAAAGCTAAAATGCTCAACTTTTCCATTGCATATGGGAAAACTCCAGTTGGGCTTTCCCGGGATTGGAAGGTACTCTGTAGATTCAAATTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006264 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009987 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032042 GO:0033258 GO:0033259 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03440 map00230 map00240 map01100 map03030 map03410 map03420 map03440

Pfam Domains

Protein Families

DNA_pol_A DNA_pol_A_exo1

Protein Analysis

895

Amino Acids

99.87

Weight (kDa)

8.43

Isoelectric Point (pI)

40.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_A_exo1	PF01612	315 - 477	5.4e-10	3'-5' exonuclease
DNA_pol_A	PF00476	705 - 836	1.5e-30	DNA polymerase family A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50840 AT1G50840 AT3G20540 AT3G20540
fragaria_vesca	FvH4_3g22230
malus_domestica	MD11G1221900.v1.1
prunus_persica	Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1
pyrus_communis	pycom11g19570
rosa_chinensis	RchiOBHm_Chr5g0038301
rosa_laevigata	RLG00000033845
rosa_multiflora	Rmu_co8325491.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042720
rosa_rugosa	Rorug05G0171900
rosa_samantha	Rh5AG259200 Rh5BG263000 Rh5CG295400 Rh5DG272000
rosa_wichuraiana	Rw5G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2686
AasI	GACNNNNNNGTC	1 cut(s)	1202
Acc65I	GGTACC	1 cut(s)	1298
AccB1I	GGYRCC	3 cut(s)	165, 1216, 1298
AccB7I	CCANNNNNTGG	1 cut(s)	1469
AccBSI	CCGCTC	1 cut(s)	1958
AciI	CCGC	9 cut(s)	254, 984, 987, 1135, 1156, 1896, 1956, 2254, 2320
AclWI	GGATC	8 cut(s)	1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	5 cut(s)	1007, 1814, 2217, 2275, 2347
AcuI	CTGAAG	6 cut(s)	102, 234, 339, 895, 1872, 1917
AcyI	GRCGYC	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	6 cut(s)	711, 1300, 1661, 1804, 2477, 2667
AflIII	ACRYGT	1 cut(s)	2472
AgeI	ACCGGT	1 cut(s)	2307
AjnI	CCWGG	6 cut(s)	180, 242, 1468, 2322, 2341, 2536
AleI	CACNNNNGTG	1 cut(s)	851
Alw21I	GWGCWC	1 cut(s)	1521
Alw26I	GTCTC	2 cut(s)	784, 1991
AlwI	GGATC	8 cut(s)	1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
AlwNI	CAGNNNCTG	3 cut(s)	1469, 1877, 2249
Ama87I	CYCGRG	1 cut(s)	2652
AoxI	GGCC	5 cut(s)	41, 578, 855, 1131, 1883
ApeKI	GCWGC	5 cut(s)	185, 251, 698, 2126, 2336
ApoI	RAATTY	5 cut(s)	1007, 1814, 2217, 2275, 2347
ArsI	GACNNNNNNTTYG	4 cut(s)	19, 51, 1193, 1225
AsiGI	ACCGGT	1 cut(s)	2307
Asp700I	GAANNNNTTC	1 cut(s)	726
Asp718I	GGTACC	1 cut(s)	1298
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	7 cut(s)	102, 521, 578, 626, 926, 1132, 2305
AsuC2I	CCSGG	2 cut(s)	2653, 2654
AsuHPI	GGTGA	3 cut(s)	416, 511, 827
AvaI	CYCGRG	1 cut(s)	2652
AvaII	GGWCC	5 cut(s)	102, 521, 626, 926, 2305
AxyI	CCTNAGG	2 cut(s)	170, 266
BaeGI	GKGCMC	1 cut(s)	1219
BamHI	GGATCC	2 cut(s)	1951, 2527
BanI	GGYRCC	3 cut(s)	165, 1216, 1298
BanII	GRGCYC	1 cut(s)	1521
BarI	GAAGNNNNNNTAC	2 cut(s)	2561, 2593
BbsI	GAAGAC	4 cut(s)	78, 87, 599, 1268
Bbv12I	GWGCWC	1 cut(s)	1521
BbvI	GCAGC	5 cut(s)	172, 238, 685, 2113, 2323
BccI	CCATC	9 cut(s)	367, 512, 974, 1228, 1289, 1298, 1448, 1525, 1976
BciT130I	CCWGG	6 cut(s)	182, 244, 1470, 2324, 2343, 2538
BciVI	GTATCC	1 cut(s)	2566
BcnI	CCSGG	2 cut(s)	2653, 2654
BcoDI	GTCTC	2 cut(s)	784, 1991
BfaI	CTAG	6 cut(s)	99, 234, 486, 630, 1568, 2265
BfmI	CTRYAG	4 cut(s)	468, 885, 1832, 2671
BfoI	RGCGCY	1 cut(s)	169
BfuI	GTATCC	1 cut(s)	2566
BglII	AGATCT	2 cut(s)	724, 1926
BisI	GCNGC	7 cut(s)	186, 252, 699, 985, 988, 2127, 2337
BlsI	GCNGC	7 cut(s)	187, 253, 700, 986, 989, 2128, 2338
Bme1390I	CCNGG	8 cut(s)	182, 244, 1470, 2324, 2343, 2538, 2653, 2654
Bme18I	GGWCC	5 cut(s)	102, 521, 626, 926, 2305
BmeT110I	CYCGRG	1 cut(s)	2652
BmgT120I	GGNCC	7 cut(s)	102, 521, 578, 626, 926, 1132, 2305
BmiI	GGNNCC	9 cut(s)	104, 167, 579, 1218, 1300, 1474, 1953, 1971, 2529
BmrFI	CCNGG	8 cut(s)	182, 244, 1470, 2324, 2343, 2538, 2653, 2654
BmrI	ACTGGG	4 cut(s)	539, 1322, 2259, 2549
BmsI	GCATC	7 cut(s)	795, 835, 969, 1375, 1642, 1891, 2416
BmuI	ACTGGG	4 cut(s)	539, 1322, 2259, 2549
BpiI	GAAGAC	4 cut(s)	78, 87, 599, 1268
BplI	GAGNNNNNCTC	2 cut(s)	2021, 2053
BpmI	CTGGAG	2 cut(s)	265, 2622
BpuEI	CTTGAG	1 cut(s)	2540
BpuMI	CCSGG	2 cut(s)	2653, 2654
BsaBI	GATNNNNATC	1 cut(s)	1458
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	3 cut(s)	573, 1361, 2652
BsaWI	WCCGGW	1 cut(s)	2307
BsaXI	ACNNNNNCTCC	2 cut(s)	1415, 1445
Bse118I	RCCGGY	2 cut(s)	644, 2307
Bse1I	ACTGG	8 cut(s)	534, 707, 1328, 1505, 1882, 2254, 2555, 2639
Bse21I	CCTNAGG	2 cut(s)	170, 266
Bse3DI	GCAATG	3 cut(s)	2121, 2472, 2619
Bse8I	GATNNNNATC	1 cut(s)	1458
BseBI	CCWGG	6 cut(s)	182, 244, 1470, 2324, 2343, 2538
BseDI	CCNNGG	3 cut(s)	573, 1361, 2652
BseGI	GGATG	4 cut(s)	810, 976, 2172, 2431
BseJI	GATNNNNATC	1 cut(s)	1458
BseMI	GCAATG	3 cut(s)	2121, 2472, 2619
BseMII	CTCAG	4 cut(s)	257, 1530, 1851, 2577
BseNI	ACTGG	8 cut(s)	534, 707, 1328, 1505, 1882, 2254, 2555, 2639
BseRI	GAGGAG	4 cut(s)	7, 1244, 1364, 2108
BseSI	GKGCMC	1 cut(s)	1219
BseXI	GCAGC	5 cut(s)	172, 238, 685, 2113, 2323
BsgI	GTGCAG	1 cut(s)	2322
BshFI	GGCC	5 cut(s)	43, 580, 857, 1133, 1885
BshNI	GGYRCC	3 cut(s)	165, 1216, 1298
BshTI	ACCGGT	1 cut(s)	2307
BsiHKAI	GWGCWC	1 cut(s)	1521
BsiHKCI	CYCGRG	1 cut(s)	2652
BsiSI	CCGG	3 cut(s)	645, 2308, 2653
BslFI	GGGAC	3 cut(s)	88, 677, 1723
BsmAI	GTCTC	2 cut(s)	784, 1991
BsmFI	GGGAC	3 cut(s)	88, 677, 1723
BsmI	GAATGC	2 cut(s)	1551, 2081
BsnI	GGCC	5 cut(s)	43, 580, 857, 1133, 1885
BsoBI	CYCGRG	1 cut(s)	2652
Bsp1286I	GDGCHC	2 cut(s)	1219, 1521
Bsp19I	CCATGG	1 cut(s)	1361
BspACI	CCGC	9 cut(s)	254, 984, 987, 1135, 1156, 1896, 1956, 2254, 2320
BspANI	GGCC	5 cut(s)	43, 580, 857, 1133, 1885
BspCNI	CTCAG	4 cut(s)	258, 1531, 1852, 2578
BspLI	GGNNCC	9 cut(s)	104, 167, 579, 1218, 1300, 1474, 1953, 1971, 2529
BspMAI	CTGCAG	1 cut(s)	1836
BspPI	GGATC	8 cut(s)	1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
BspQI	GCTCTTC	1 cut(s)	1746
BspT107I	GGYRCC	3 cut(s)	165, 1216, 1298
BsrBI	CCGCTC	1 cut(s)	1958
BsrDI	GCAATG	3 cut(s)	2121, 2472, 2619
BsrFI	RCCGGY	2 cut(s)	644, 2307
BsrI	ACTGG	8 cut(s)	534, 707, 1328, 1505, 1882, 2254, 2555, 2639
BssAI	RCCGGY	2 cut(s)	644, 2307
BssECI	CCNNGG	3 cut(s)	573, 1361, 2652
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	2 cut(s)	573, 1361
Bst2UI	CCWGG	6 cut(s)	182, 244, 1470, 2324, 2343, 2538
Bst4CI	ACNGT	5 cut(s)	362, 434, 1714, 2002, 2411
Bst6I	CTCTTC	3 cut(s)	1746, 1936, 2022
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	8 cut(s)	146, 1135, 1517, 1694, 1921, 2079, 2113, 2203
BstDEI	CTNAG	9 cut(s)	170, 266, 809, 1522, 1539, 1656, 1860, 2384, 2586
BstDSI	CCRYGG	1 cut(s)	1361
BstF5I	GGATG	4 cut(s)	810, 976, 2172, 2431
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstMAI	GTCTC	2 cut(s)	784, 1991
BstMWI	GCNNNNNNNGC	7 cut(s)	248, 1385, 2078, 2117, 2126, 2333, 2435
BstNI	CCWGG	6 cut(s)	182, 244, 1470, 2324, 2343, 2538
BstNSI	RCATGY	2 cut(s)	2422, 2476
BstSCI	CCNGG	8 cut(s)	180, 242, 1468, 2322, 2341, 2536, 2651, 2652
BstSFI	CTRYAG	4 cut(s)	468, 885, 1832, 2671
BstSLI	GKGCMC	1 cut(s)	1219
BstV1I	GCAGC	5 cut(s)	172, 238, 685, 2113, 2323
BstV2I	GAAGAC	4 cut(s)	78, 87, 599, 1268
BstX2I	RGATCY	8 cut(s)	724, 1027, 1365, 1926, 1951, 2316, 2527, 2582
BstXI	CCANNNNNNTGG	1 cut(s)	1129
BstYI	RGATCY	8 cut(s)	724, 1027, 1365, 1926, 1951, 2316, 2527, 2582
Bsu36I	CCTNAGG	2 cut(s)	170, 266
BsuI	GTATCC	1 cut(s)	2566
BsuRI	GGCC	5 cut(s)	43, 580, 857, 1133, 1885
BtgI	CCRYGG	1 cut(s)	1361
BtsCI	GGATG	4 cut(s)	810, 976, 2172, 2431
BtsI	GCAGTG	1 cut(s)	1448
BtsIMutI	CAGTG	3 cut(s)	1448, 1773, 2007
Cac8I	GCNNGC	8 cut(s)	146, 1135, 1517, 1694, 1921, 2079, 2113, 2203
CaiI	CAGNNNCTG	3 cut(s)	1469, 1877, 2249
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	2 cut(s)	644, 2307
Cfr13I	GGNCC	7 cut(s)	102, 521, 578, 626, 926, 1132, 2305
Cfr9I	CCCGGG	1 cut(s)	2652
CsiI	ACCWGGT	1 cut(s)	2536
Csp6I	GTAC	6 cut(s)	710, 1299, 1660, 1803, 2476, 2666
CspAI	ACCGGT	1 cut(s)	2307
CspCI	CAANNNNNGTGG	2 cut(s)	2422, 2457
CviQI	GTAC	6 cut(s)	710, 1299, 1660, 1803, 2476, 2666
DdeI	CTNAG	9 cut(s)	170, 266, 809, 1522, 1539, 1656, 1860, 2384, 2586
DinI	GGCGCC	1 cut(s)	167
DraIII	CACNNNGTG	1 cut(s)	404
DrdI	GACNNNNNNGTC	1 cut(s)	1202
DseDI	GACNNNNNNGTC	1 cut(s)	1202
EaeI	YGGCCR	1 cut(s)	855
Eam1104I	CTCTTC	3 cut(s)	1746, 1936, 2022
EarI	CTCTTC	3 cut(s)	1746, 1936, 2022
EciI	GGCGGA	1 cut(s)	2309
Ecl136II	GAGCTC	1 cut(s)	1519
Eco130I	CCWWGG	2 cut(s)	573, 1361
Eco147I	AGGCCT	1 cut(s)	43
Eco24I	GRGCYC	1 cut(s)	1521
Eco32I	GATATC	3 cut(s)	1254, 1565, 2163
Eco47I	GGWCC	5 cut(s)	102, 521, 626, 926, 2305
Eco53kI	GAGCTC	1 cut(s)	1519
Eco57I	CTGAAG	6 cut(s)	102, 234, 339, 895, 1872, 1917
Eco81I	CCTNAGG	2 cut(s)	170, 266
Eco88I	CYCGRG	1 cut(s)	2652
EcoICRI	GAGCTC	1 cut(s)	1519
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	2217
EcoRII	CCWGG	6 cut(s)	180, 242, 1468, 2322, 2341, 2536
EcoRV	GATATC	3 cut(s)	1254, 1565, 2163
EcoT14I	CCWWGG	2 cut(s)	573, 1361
EcoT38I	GRGCYC	1 cut(s)	1521
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	573, 1361
FalI	AAGNNNNNCTT	2 cut(s)	2502, 2534
FaqI	GGGAC	3 cut(s)	88, 677, 1723
FauI	CCCGC	2 cut(s)	1142, 1963
FauNDI	CATATG	1 cut(s)	2626
Fnu4HI	GCNGC	7 cut(s)	186, 252, 699, 985, 988, 2127, 2337
FokI	GGATG	4 cut(s)	817, 983, 2159, 2438
FriOI	GRGCYC	1 cut(s)	1521
Fsp4HI	GCNGC	7 cut(s)	186, 252, 699, 985, 988, 2127, 2337
FspBI	CTAG	6 cut(s)	99, 234, 486, 630, 1568, 2265
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	7 cut(s)	186, 252, 699, 985, 988, 2127, 2337
GsuI	CTGGAG	2 cut(s)	265, 2622
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	5 cut(s)	43, 580, 857, 1133, 1885
HapII	CCGG	3 cut(s)	645, 2308, 2653
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	166
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	2109
HpaII	CCGG	3 cut(s)	645, 2308, 2653
HphI	GGTGA	3 cut(s)	416, 511, 827
Hpy166II	GTNNAC	4 cut(s)	421, 430, 1717, 2228
Hpy8I	GTNNAC	4 cut(s)	421, 430, 1717, 2228
HpyCH4III	ACNGT	5 cut(s)	362, 434, 1714, 2002, 2411
HpyCH4IV	ACGT	1 cut(s)	456
HpyF10VI	GCNNNNNNNGC	7 cut(s)	248, 1385, 2078, 2117, 2126, 2333, 2435
HpyF3I	CTNAG	9 cut(s)	170, 266, 809, 1522, 1539, 1656, 1860, 2384, 2586
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	166
HspAI	GCGC	1 cut(s)	166
KasI	GGCGCC	1 cut(s)	165
KpnI	GGTACC	1 cut(s)	1302
LguI	GCTCTTC	1 cut(s)	1746
LmnI	GCTCC	5 cut(s)	1018, 1471, 1813, 1963, 1969
Lsp1109I	GCAGC	5 cut(s)	172, 238, 685, 2113, 2323
LweI	GCATC	7 cut(s)	795, 835, 969, 1375, 1642, 1891, 2416
MabI	ACCWGGT	1 cut(s)	2536
MaeI	CTAG	6 cut(s)	99, 234, 486, 630, 1568, 2265
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	5 cut(s)	256, 382, 396, 842, 1169
MbiI	CCGCTC	1 cut(s)	1958
MfeI	CAATTG	1 cut(s)	1839
MflI	RGATCY	8 cut(s)	724, 1027, 1365, 1926, 1951, 2316, 2527, 2582
MhlI	GDGCHC	2 cut(s)	1219, 1521
Mly113I	GGCGCC	1 cut(s)	166
MlyI	GAGTC	3 cut(s)	106, 224, 1721
MmeI	TCCRAC	3 cut(s)	249, 2190, 2403
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	6 cut(s)	567, 741, 870, 1038, 1095, 1160
MslI	CAYNNNNRTG	7 cut(s)	840, 851, 965, 1127, 1222, 1667, 2487
MspA1I	CMGCKG	1 cut(s)	2377
MspI	CCGG	3 cut(s)	645, 2308, 2653
MspR9I	CCNGG	8 cut(s)	182, 244, 1470, 2324, 2343, 2538, 2653, 2654
MunI	CAATTG	1 cut(s)	1839
Mva1269I	GAATGC	2 cut(s)	1551, 2081
MvaI	CCWGG	6 cut(s)	182, 244, 1470, 2324, 2343, 2538
MwoI	GCNNNNNNNGC	7 cut(s)	248, 1385, 2078, 2117, 2126, 2333, 2435
NarI	GGCGCC	1 cut(s)	166
NciI	CCSGG	2 cut(s)	2653, 2654
NcoI	CCATGG	1 cut(s)	1361
NdeI	CATATG	1 cut(s)	2626
NlaIV	GGNNCC	9 cut(s)	104, 167, 579, 1218, 1300, 1474, 1953, 1971, 2529
NmeAIII	GCCGAG	1 cut(s)	883
NmuCI	GTSAC	2 cut(s)	396, 842
NspI	RCATGY	2 cut(s)	2422, 2476
OliI	CACNNNNGTG	1 cut(s)	851
PceI	AGGCCT	1 cut(s)	43
PciI	ACATGT	1 cut(s)	2472
PciSI	GCTCTTC	1 cut(s)	1746
PctI	GAATGC	2 cut(s)	1551, 2081
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	9 cut(s)	620, 689, 1145, 1732, 1988, 2153, 2284, 2389, 2676
PflMI	CCANNNNNTGG	1 cut(s)	1469
PfoI	TCCNGGA	1 cut(s)	1468
PinAI	ACCGGT	1 cut(s)	2307
PkrI	GCNGC	7 cut(s)	187, 253, 700, 986, 989, 2128, 2338
PleI	GAGTC	3 cut(s)	106, 224, 1721
PluTI	GGCGCC	1 cut(s)	169
PpsI	GAGTC	3 cut(s)	106, 224, 1721
PpuMI	RGGWCCY	1 cut(s)	102
PscI	ACATGT	1 cut(s)	2472
PsiI	TTATAA	1 cut(s)	2686
Psp124BI	GAGCTC	1 cut(s)	1521
Psp5II	RGGWCCY	1 cut(s)	102
Psp6I	CCWGG	6 cut(s)	180, 242, 1468, 2322, 2341, 2536
PspGI	CCWGG	6 cut(s)	180, 242, 1468, 2322, 2341, 2536
PspN4I	GGNNCC	9 cut(s)	104, 167, 579, 1218, 1300, 1474, 1953, 1971, 2529
PspPI	GGNCC	7 cut(s)	102, 521, 578, 626, 926, 1132, 2305
PspPPI	RGGWCCY	1 cut(s)	102
PstI	CTGCAG	1 cut(s)	1836
PstNI	CAGNNNCTG	3 cut(s)	1469, 1877, 2249
PsuI	RGATCY	8 cut(s)	724, 1027, 1365, 1926, 1951, 2316, 2527, 2582
PvuII	CAGCTG	1 cut(s)	2377
RsaI	GTAC	6 cut(s)	711, 1300, 1661, 1804, 2477, 2667
RsaNI	GTAC	6 cut(s)	710, 1299, 1660, 1803, 2476, 2666
RseI	CAYNNNNRTG	7 cut(s)	840, 851, 965, 1127, 1222, 1667, 2487
SacI	GAGCTC	1 cut(s)	1521
SapI	GCTCTTC	1 cut(s)	1746
SaqAI	TTAA	6 cut(s)	567, 741, 870, 1038, 1095, 1160
SatI	GCNGC	7 cut(s)	186, 252, 699, 985, 988, 2127, 2337
Sau96I	GGNCC	7 cut(s)	102, 521, 578, 626, 926, 1132, 2305
SchI	GAGTC	3 cut(s)	106, 224, 1721
ScrFI	CCNGG	8 cut(s)	182, 244, 1470, 2324, 2343, 2538, 2653, 2654
SduI	GDGCHC	2 cut(s)	1219, 1521
SexAI	ACCWGGT	1 cut(s)	2536
SfaNI	GCATC	7 cut(s)	795, 835, 969, 1375, 1642, 1891, 2416
SfcI	CTRYAG	4 cut(s)	468, 885, 1832, 2671
SfoI	GGCGCC	1 cut(s)	167
SinI	GGWCC	5 cut(s)	102, 521, 626, 926, 2305
SmaI	CCCGGG	1 cut(s)	2654
SmiMI	CAYNNNNRTG	7 cut(s)	840, 851, 965, 1127, 1222, 1667, 2487
SmlI	CTYRAG	1 cut(s)	2519
SmoI	CTYRAG	1 cut(s)	2519
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	9 cut(s)	254, 984, 987, 1135, 1156, 1896, 1956, 2254, 2320
SspDI	GGCGCC	1 cut(s)	165
SspI	AATATT	1 cut(s)	1269
SspMI	CTAG	6 cut(s)	99, 234, 486, 630, 1568, 2265
SstI	GAGCTC	1 cut(s)	1521
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	8 cut(s)	180, 242, 1468, 2322, 2341, 2536, 2651, 2652
StyI	CCWWGG	2 cut(s)	573, 1361
TaaI	ACNGT	5 cut(s)	362, 434, 1714, 2002, 2411
TaiI	ACGT	1 cut(s)	459
TaqI	TCGA	2 cut(s)	1558, 1730
TatI	WGTACW	3 cut(s)	709, 1659, 1802
TauI	GCSGC	2 cut(s)	987, 990
TfiI	GAWTC	9 cut(s)	620, 689, 1145, 1732, 1988, 2153, 2284, 2389, 2676
Tru1I	TTAA	6 cut(s)	567, 741, 870, 1038, 1095, 1160
Tru9I	TTAA	6 cut(s)	567, 741, 870, 1038, 1095, 1160
TscAI	CASTG	3 cut(s)	1448, 1780, 2007
TseFI	GTSAC	2 cut(s)	396, 842
TseI	GCWGC	5 cut(s)	185, 251, 698, 2126, 2336
Tsp45I	GTSAC	2 cut(s)	396, 842
TspGWI	ACGGA	1 cut(s)	2595
TspMI	CCCGGG	1 cut(s)	2652
TspRI	CASTG	3 cut(s)	1448, 1780, 2007
Van91I	CCANNNNNTGG	1 cut(s)	1469
VpaK11BI	GGWCC	5 cut(s)	102, 521, 626, 926, 2305
XapI	RAATTY	5 cut(s)	1007, 1814, 2217, 2275, 2347
XbaI	TCTAGA	1 cut(s)	233
XceI	RCATGY	2 cut(s)	2422, 2476
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1700
XmaI	CCCGGG	1 cut(s)	2652
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	6 cut(s)	99, 234, 486, 630, 1568, 2265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.