RchiOBHm_Chr5g0038301

DNA polymerase

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
32875914 .. 32884825
8912 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31693

Sequence Viewer

Length: 3129 bp
ATGGCTATGGGGTTCTCCTCCTTCCAGACCAGCCATTTGAGGCCTTGCCCTTCTTATTTCTCTTTATTACGGGCTTGTCCTCTGTCTTCTTCTTCTTCTAGGTCCCTATGGACTCCTTCAGTTTCAAGGCGAGTTTTGGATTGCAAGCCAGAGGTCTATGTTGGGCGCCTAAGGGGTGTCCAGGCTGCCAAATCATATAATACTCTGACCTCTGAAGGAAAATCCAACGACTCTAGATATGCCTGGAGAGCTGCGGTTACTCGCCTGAGGAAAGAAAAACAGGAAGTGGAAAGTTCTTACAGAACTAAGACATACTCTGAAGGAAATATAAAAAATATTACCCCTGAAAAGGTTGATAACAGTAGCTATGAGATGGGGGAGGTAACTTTATACGAGACAAATGGTGAAGGAAGTAATGTGGACAGAGTAAACGGTTATGCACACGATAGTCCAGATGTAGTAGCTTCTGTAGGAATTGACAATCCTAGTGTGGAAAAGGTGAATGGTTATGCACATGATGGTCCAAGACTGGGTGTGGCTACGCCACCCAGATCAGGGAAGGAAGTTAAGTCCAAGGGGCCATTATTGGGGAAGACCTCAAAGGTCAGGAAAGGGATTGATTCTGGACCTAGTAAAGATGAACCCGGTAATGTGATGAACAGGGACAAGTCTGATGTAAAATCTTCTGAATCTAAAGCTGCTACACCAGTACATAGTAAGGAAGATCTTCGCAAGACACTTAATAACATTTACGACAAAGTTCTCATTGTCAATAGTGTCTCTATTGCAAAGAAAGTCGTTAGGATGCTTAGAGGTGAATATAGGCATCTTGTCCATGCCTGTGACACAGAGGTGGCCGAGATAGATGTTAAGAAAGAAACACCTGTAGATCATGGACAGATAATATGCTTCAGTATATATTCTGGACCAGATGTGGATTTTGGAAATGGAAAGTCCTGCATCTGGGTGGATGTTCTTGATGGTGGCGGCAAGGAACTTCTACTTGAATTTGCTCCATTTTTTGAAGATCCCTCCATTAAAAAGGTTTGGCACAATTATAGCTTTGATAACCATGTAATTGAGAACTATGGGTTTAAGGTTTCTGGCTTTCATGCCGACACCATGCACATGGCCCGCTTGTGGGATTCATCAAGGCGGTTAAAGGGTGGTTACTCTCTTGAAGCTCTAACACATGACCCAAAGGTCATGTCTGGGGCACCATCATGTGAGGAGAATGACTTGATTGGTAAGATATCAATGAAGACAATATTTGGCAGAAAGAAATTGAAAAAAGATGGTACCGATGGGAAAATAACAATCCTTGACCCAGTTGAAGTGCTACAAAGAGAGGAGAGAAAACCATGGATCTGTTATTCTGCGTTAGATGCAATAAGCACACTAAAGCTTTATGAGAGTATGAAAAACCAACTCTCCAATAGGCAGTGGGAAATTGATGGAAATCCAGCTCCTGGAACCATGTTTGATTTCTATAAAAAATACTGGCGACCATTTGGCGAGCTCTTAGTTCAGATGGAAACCGAGGGAATGCTGGTTGATCGAGGATATCTAGCTGAAATTGAGAAGTTGGCCAAATCAGAACAAGAGGTTGCTGTGAATAGATTTCGCAAGTGGGCTTCCAGCTTTTGCCCTGATGCTAAGTACATGAATGTGGGAAGTGATGTGCAACTACGCCAGCTTTTATTTGGTGGGACCGTGAACAGCAAGGACTCGAATCAGGCTCTTCCAAATGAGAGGACTTTTAGAGTTCCAAACACTGATAAAGTGATTGAAGAAGGCAAAAGTACAGCTCCAAAATTTTGCAATATCACTCTGCACACAATTGGTGTCAATCTGCCAACTGAGATTTACACAGCAACTGGTTGGCCTTCAGTTAGCGGAGATGCTTTGAAGATTTTAGCTGGCAAGATCTCTTCAGAGTATGATTTTATGGATCCCGCTCCTGATATGGAGTCTGTTGATGATGGAGATTCTTGTGAGACAGTGAGTGATGAATACTTGGGAAAAGAAGAGATTATCTCTGAAAATCTTGACAGGTCCGACTATGGAACAGCTTTGCAAGCATTCGAGTCAGATGAGAAGGGGAAGGAAGCTTGCCAAGCCATTGCTGCATTATGTCAAGTTTGCTCTATTGATTCGTTGATATCCAACTTCATCCTCCCTTTGCAGGGCAGTAATATAGCTGGCAAAAACAGACGAATTCATTGTTCACTAAATATCAACACAGAAACCGGGCGGTTATCTGCTAGGCGACCAAATTTGCAGAATCAACCAGCTCTTGAAAAGGACCGGTATAAGATCCGCCAGGCATTTGTAGCTGCACCTGGAAATTCTCTCATTGTTGCTGACTATGGACAGCTGGAACTTAGGATTCTTGCTCATCTTTCTAACTGTAAGAGCATGTTGGATGCCTTCAAAGCTGGTGGGGATTTCCATTCAAGGACTGCAATGAACATGTACCAGCATATTCGTGAAGCTGTTGAGAACAAGGAAGTGCTACTTGAGTGGGATCCTCAACCTGGTCAGGATAAACCCCCAGTTCCAATGTTGAAGGATACCTACGGATCGGAGAGAAGGAAAGCTAAAATGCTCAACTTTTCCATTGCATATGGGAAAACTCCAGTTGGGCTTTCCCGGGATTGGAAGGTATCTGTCCAGGATGCAGAGAAAACAGTTGAACTTTGGTACAAAGAAAGAAAAGAAGTGAGAAGGTGGCAAGAAGAACGTAAAAAAGAAGCTAAAGAATTTAGATGTGTTCGAACATTGCTAGGACGGGCACGCTGGTTTCCCTCATTAACTCGTGCTAGCCGTGCTCAAAGAGGACATATTGAAAGGGCTGCTATCAATACTCCAGTGCAGGGTAGTGCTGCTGATGTCGCCATGTGTGCCATGTTAGAGATATCCAATAATGCACGTTTGAAAGATCTTGGGTGGAGGCTGCTTTTACAGGTCCATGATGAAGTCATCTTGGAAGGGCCATCAGAATCAGAGGAGGTTGCAAAGGCCATAGTTGTTGACTGCATGTCGAAGCCCTTTGGTGGCAAGAACATCCTTAATGTTGACCTTGCGGTTGATGCCAAGTGTGCACAGAACTGGTATGCTGCCAAGTAG

Protein Analysis

1042

Amino Acids

116.46

Weight (kDa)

8.05

Isoelectric Point (pI)

42.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_pol_A_exo1 PF01612 315 - 477 7.8e-10 3'-5' exonuclease
DNA_pol_A PF00476 705 - 835 2.3e-30 DNA polymerase family A
DNA_pol_A PF00476 861 - 1039 4.2e-45 DNA polymerase family A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011243)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1202
Acc65I GGTACC 1 cut(s) 1298
AccB1I GGYRCC 3 cut(s) 165, 1216, 1298
AccB7I CCANNNNNTGG 1 cut(s) 1469
AccBSI CCGCTC 1 cut(s) 1958
AciI CCGC 9 cut(s) 254, 987, 1135, 1156, 1896, 1956, 2254, 2320, 3086
AclWI GGATC 8 cut(s) 1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
AcoI YGGCCR 2 cut(s) 855, 1587
AcsI RAATTY 6 cut(s) 1007, 1814, 2217, 2275, 2347, 2762
AcuI CTGAAG 6 cut(s) 102, 234, 339, 895, 1872, 1917
AcyI GRCGYC 1 cut(s) 166
AfaI GTAC 6 cut(s) 711, 1300, 1661, 1804, 2477, 2705
AflIII ACRYGT 1 cut(s) 2472
AgeI ACCGGT 1 cut(s) 2307
AhdI GACNNNNNGTC 1 cut(s) 3040
AjnI CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
AleI CACNNNNGTG 1 cut(s) 851
Alw21I GWGCWC 3 cut(s) 1521, 2833, 3106
Alw26I GTCTC 3 cut(s) 389, 784, 1991
Alw44I GTGCAC 1 cut(s) 3102
AlwI GGATC 8 cut(s) 1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
AlwNI CAGNNNCTG 2 cut(s) 1469, 1877
Ama87I CYCGRG 1 cut(s) 2652
AoxI GGCC 8 cut(s) 41, 578, 855, 1131, 1587, 1883, 2993, 3021
ApaLI GTGCAC 1 cut(s) 3102
ApeKI GCWGC 9 cut(s) 185, 251, 698, 2126, 2336, 2855, 2885, 2956, 3119
ApoI RAATTY 6 cut(s) 1007, 1814, 2217, 2275, 2347, 2762
ArsI GACNNNNNNTTYG 4 cut(s) 19, 51, 1193, 1225
AsiGI ACCGGT 1 cut(s) 2307
Asp700I GAANNNNTTC 1 cut(s) 726
Asp718I GGTACC 1 cut(s) 1298
AspLEI GCGC 1 cut(s) 168
AsuC2I CCSGG 4 cut(s) 645, 2251, 2653, 2654
AsuHPI GGTGA 3 cut(s) 416, 511, 827
AsuII TTCGAA 1 cut(s) 2776
AsuNHI GCTAGC 1 cut(s) 2822
AvaI CYCGRG 1 cut(s) 2652
AvaII GGWCC 8 cut(s) 102, 521, 626, 926, 1710, 2055, 2305, 2968
AxyI CCTNAGG 2 cut(s) 170, 266
BaeGI GKGCMC 3 cut(s) 1219, 2797, 3106
BalI TGGCCA 1 cut(s) 1589
BamHI GGATCC 2 cut(s) 1951, 2527
BanI GGYRCC 3 cut(s) 165, 1216, 1298
BanII GRGCYC 1 cut(s) 1521
BarI GAAGNNNNNNTAC 2 cut(s) 2561, 2593
BauI CACGAG 1 cut(s) 2817
BbsI GAAGAC 3 cut(s) 78, 599, 1268
Bbv12I GWGCWC 3 cut(s) 1521, 2833, 3106
BbvI GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
BceAI ACGGC 1 cut(s) 2811
BciT130I CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
BciVI GTATCC 1 cut(s) 2566
BcnI CCSGG 4 cut(s) 645, 2251, 2653, 2654
BcoDI GTCTC 3 cut(s) 389, 784, 1991
BfaI CTAG 8 cut(s) 99, 234, 486, 630, 1568, 2265, 2786, 2823
BfmI CTRYAG 2 cut(s) 468, 885
BfoI RGCGCY 1 cut(s) 169
BfuI GTATCC 1 cut(s) 2566
BglII AGATCT 3 cut(s) 724, 1926, 2941
Bme18I GGWCC 8 cut(s) 102, 521, 626, 926, 1710, 2055, 2305, 2968
BmeRI GACNNNNNGTC 1 cut(s) 3040
BmeT110I CYCGRG 1 cut(s) 2652
BmiI GGNNCC 9 cut(s) 104, 167, 579, 1218, 1300, 1474, 1711, 1953, 2529
BmrI ACTGGG 3 cut(s) 539, 1322, 2549
BmsI GCATC 9 cut(s) 795, 835, 969, 1375, 1642, 1891, 2416, 2668, 3082
BmtI GCTAGC 1 cut(s) 2826
BmuI ACTGGG 3 cut(s) 539, 1322, 2549
BpiI GAAGAC 3 cut(s) 78, 599, 1268
BplI GAGNNNNNCTC 2 cut(s) 2021, 2053
BpmI CTGGAG 3 cut(s) 265, 2622, 2853
Bpu14I TTCGAA 1 cut(s) 2776
BpuEI CTTGAG 1 cut(s) 2540
BpuMI CCSGG 4 cut(s) 645, 2251, 2653, 2654
BsaBI GATNNNNATC 1 cut(s) 1458
BsaHI GRCGYC 1 cut(s) 166
BsaJI CCNNGG 4 cut(s) 573, 1361, 1539, 2652
BsaWI WCCGGW 1 cut(s) 2307
BsaXI ACNNNNNCTCC 2 cut(s) 1415, 1445
Bse118I RCCGGY 1 cut(s) 2307
Bse1I ACTGG 9 cut(s) 534, 707, 1328, 1505, 1882, 2555, 2639, 2870, 3116
Bse21I CCTNAGG 2 cut(s) 170, 266
Bse3DI GCAATG 4 cut(s) 2121, 2472, 2619, 2780
Bse8I GATNNNNATC 1 cut(s) 1458
BseBI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
BseDI CCNNGG 4 cut(s) 573, 1361, 1539, 2652
BseGI GGATG 6 cut(s) 810, 976, 2172, 2431, 2683, 3066
BseJI GATNNNNATC 1 cut(s) 1458
BseMI GCAATG 4 cut(s) 2121, 2472, 2619, 2780
BseMII CTCAG 2 cut(s) 257, 1851
BseNI ACTGG 9 cut(s) 534, 707, 1328, 1505, 1882, 2555, 2639, 2870, 3116
BseRI GAGGAG 4 cut(s) 7, 1244, 1364, 3023
BseSI GKGCMC 3 cut(s) 1219, 2797, 3106
BseXI GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
BsgI GTGCAG 3 cut(s) 1817, 2322, 2894
BshFI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BshNI GGYRCC 3 cut(s) 165, 1216, 1298
BshTI ACCGGT 1 cut(s) 2307
BsiHKAI GWGCWC 3 cut(s) 1521, 2833, 3106
BsiHKCI CYCGRG 1 cut(s) 2652
BsiSI CCGG 4 cut(s) 645, 2250, 2308, 2653
BslFI GGGAC 3 cut(s) 88, 677, 1723
BsmAI GTCTC 3 cut(s) 389, 784, 1991
BsmFI GGGAC 3 cut(s) 88, 677, 1723
BsmI GAATGC 2 cut(s) 1551, 2081
BsnI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BsoBI CYCGRG 1 cut(s) 2652
Bsp119I TTCGAA 1 cut(s) 2776
Bsp1286I GDGCHC 5 cut(s) 1219, 1521, 2797, 2833, 3106
Bsp19I CCATGG 1 cut(s) 1361
BspACI CCGC 9 cut(s) 254, 987, 1135, 1156, 1896, 1956, 2254, 2320, 3086
BspANI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BspCNI CTCAG 2 cut(s) 258, 1852
BspLI GGNNCC 9 cut(s) 104, 167, 579, 1218, 1300, 1474, 1711, 1953, 2529
BspOI GCTAGC 1 cut(s) 2826
BspPI GGATC 8 cut(s) 1022, 1373, 1946, 1959, 2311, 2522, 2535, 2590
BspQI GCTCTTC 1 cut(s) 1746
BspT104I TTCGAA 1 cut(s) 2776
BspT107I GGYRCC 3 cut(s) 165, 1216, 1298
BsrBI CCGCTC 1 cut(s) 1958
BsrDI GCAATG 4 cut(s) 2121, 2472, 2619, 2780
BsrFI RCCGGY 1 cut(s) 2307
BsrI ACTGG 9 cut(s) 534, 707, 1328, 1505, 1882, 2555, 2639, 2870, 3116
BssAI RCCGGY 1 cut(s) 2307
BssECI CCNNGG 4 cut(s) 573, 1361, 1539, 2652
BssNI GRCGYC 1 cut(s) 166
BssSI CACGAG 1 cut(s) 2817
BssT1I CCWWGG 2 cut(s) 573, 1361
Bst2BI CACGAG 1 cut(s) 2817
Bst2UI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
Bst4CI ACNGT 6 cut(s) 362, 434, 1714, 2002, 2411, 2692
Bst6I CTCTTC 3 cut(s) 1746, 1936, 2022
BstACI GRCGYC 1 cut(s) 166
BstBI TTCGAA 1 cut(s) 2776
BstDEI CTNAG 8 cut(s) 170, 266, 306, 809, 1522, 1656, 1860, 2384
BstDSI CCRYGG 1 cut(s) 1361
BstF5I GGATG 6 cut(s) 810, 976, 2172, 2431, 2683, 3066
BstH2I RGCGCY 1 cut(s) 169
BstHHI GCGC 1 cut(s) 168
BstMAI GTCTC 3 cut(s) 389, 784, 1991
BstNI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
BstNSI RCATGY 3 cut(s) 2422, 2476, 3043
BstSFI CTRYAG 2 cut(s) 468, 885
BstSLI GKGCMC 3 cut(s) 1219, 2797, 3106
BstV1I GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
BstV2I GAAGAC 3 cut(s) 78, 599, 1268
BstX2I RGATCY 8 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2941
BstXI CCANNNNNNTGG 1 cut(s) 1129
BstYI RGATCY 8 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2941
Bsu36I CCTNAGG 2 cut(s) 170, 266
BsuI GTATCC 1 cut(s) 2566
BsuRI GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
BtgI CCRYGG 1 cut(s) 1361
BtsCI GGATG 6 cut(s) 810, 976, 2172, 2431, 2683, 3066
BtsI GCAGTG 1 cut(s) 1448
BtsIMutI CAGTG 4 cut(s) 1448, 1773, 2007, 2877
CaiI CAGNNNCTG 2 cut(s) 1469, 1877
CfoI GCGC 1 cut(s) 168
Cfr10I RCCGGY 1 cut(s) 2307
Cfr9I CCCGGG 1 cut(s) 2652
CsiI ACCWGGT 1 cut(s) 2536
Csp6I GTAC 6 cut(s) 710, 1299, 1660, 1803, 2476, 2704
CspAI ACCGGT 1 cut(s) 2307
CspCI CAANNNNNGTGG 2 cut(s) 2422, 2457
CviQI GTAC 6 cut(s) 710, 1299, 1660, 1803, 2476, 2704
DdeI CTNAG 8 cut(s) 170, 266, 306, 809, 1522, 1656, 1860, 2384
DinI GGCGCC 1 cut(s) 167
DrdI GACNNNNNNGTC 1 cut(s) 1202
DriI GACNNNNNGTC 1 cut(s) 3040
DseDI GACNNNNNNGTC 1 cut(s) 1202
EaeI YGGCCR 2 cut(s) 855, 1587
Eam1104I CTCTTC 3 cut(s) 1746, 1936, 2022
Eam1105I GACNNNNNGTC 1 cut(s) 3040
EarI CTCTTC 3 cut(s) 1746, 1936, 2022
EciI GGCGGA 1 cut(s) 2309
Ecl136II GAGCTC 1 cut(s) 1519
Eco130I CCWWGG 2 cut(s) 573, 1361
Eco147I AGGCCT 1 cut(s) 43
Eco24I GRGCYC 1 cut(s) 1521
Eco32I GATATC 4 cut(s) 1254, 1565, 2163, 2919
Eco47I GGWCC 8 cut(s) 102, 521, 626, 926, 1710, 2055, 2305, 2968
Eco53kI GAGCTC 1 cut(s) 1519
Eco57I CTGAAG 6 cut(s) 102, 234, 339, 895, 1872, 1917
Eco81I CCTNAGG 2 cut(s) 170, 266
Eco88I CYCGRG 1 cut(s) 2652
EcoICRI GAGCTC 1 cut(s) 1519
EcoO109I RGGNCCY 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 2217
EcoRII CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
EcoRV GATATC 4 cut(s) 1254, 1565, 2163, 2919
EcoT14I CCWWGG 2 cut(s) 573, 1361
EcoT38I GRGCYC 1 cut(s) 1521
EgeI GGCGCC 1 cut(s) 167
EheI GGCGCC 1 cut(s) 167
ErhI CCWWGG 2 cut(s) 573, 1361
FalI AAGNNNNNCTT 2 cut(s) 2502, 2534
FaqI GGGAC 3 cut(s) 88, 677, 1723
FauI CCCGC 2 cut(s) 1142, 1963
FauNDI CATATG 1 cut(s) 2626
FokI GGATG 6 cut(s) 817, 983, 2159, 2438, 2690, 3053
FriOI GRGCYC 1 cut(s) 1521
FspBI CTAG 8 cut(s) 99, 234, 486, 630, 1568, 2265, 2786, 2823
GlaI GCGC 1 cut(s) 167
GsuI CTGGAG 3 cut(s) 265, 2622, 2853
HaeII RGCGCY 1 cut(s) 169
HaeIII GGCC 8 cut(s) 43, 580, 857, 1133, 1589, 1885, 2995, 3023
HapII CCGG 4 cut(s) 645, 2250, 2308, 2653
HhaI GCGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 166
Hin6I GCGC 1 cut(s) 166
HinP1I GCGC 1 cut(s) 166
HincII GTYRAC 2 cut(s) 3034, 3079
HindII GTYRAC 2 cut(s) 3034, 3079
HindIII AAGCTT 2 cut(s) 1403, 2109
HpaII CCGG 4 cut(s) 645, 2250, 2308, 2653
HphI GGTGA 3 cut(s) 416, 511, 827
Hpy166II GTNNAC 7 cut(s) 421, 430, 1717, 2228, 3034, 3079, 3104
Hpy8I GTNNAC 7 cut(s) 421, 430, 1717, 2228, 3034, 3079, 3104
HpyCH4III ACNGT 6 cut(s) 362, 434, 1714, 2002, 2411, 2692
HpyCH4IV ACGT 2 cut(s) 2743, 2932
HpyF3I CTNAG 8 cut(s) 170, 266, 306, 809, 1522, 1656, 1860, 2384
HpySE526I ACGT 2 cut(s) 2743, 2932
Hsp92I GRCGYC 1 cut(s) 166
HspAI GCGC 1 cut(s) 166
KasI GGCGCC 1 cut(s) 165
KpnI GGTACC 1 cut(s) 1302
LguI GCTCTTC 1 cut(s) 1746
LmnI GCTCC 4 cut(s) 1018, 1471, 1813, 1963
Lsp1109I GCAGC 9 cut(s) 172, 238, 685, 2113, 2323, 2842, 2872, 2943, 3106
LweI GCATC 9 cut(s) 795, 835, 969, 1375, 1642, 1891, 2416, 2668, 3082
MabI ACCWGGT 1 cut(s) 2536
MaeI CTAG 8 cut(s) 99, 234, 486, 630, 1568, 2265, 2786, 2823
MaeII ACGT 2 cut(s) 2743, 2932
MaeIII GTNAC 4 cut(s) 256, 382, 842, 1169
MbiI CCGCTC 1 cut(s) 1958
MfeI CAATTG 1 cut(s) 1839
MflI RGATCY 8 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2941
MhlI GDGCHC 5 cut(s) 1219, 1521, 2797, 2833, 3106
MlsI TGGCCA 1 cut(s) 1589
MluNI TGGCCA 1 cut(s) 1589
Mly113I GGCGCC 1 cut(s) 166
MlyI GAGTC 5 cut(s) 106, 224, 1721, 1979, 2096
MmeI TCCRAC 4 cut(s) 249, 2082, 2190, 2403
Mox20I TGGCCA 1 cut(s) 1589
MroXI GAANNNNTTC 1 cut(s) 726
MscI TGGCCA 1 cut(s) 1589
MseI TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
MslI CAYNNNNRTG 7 cut(s) 840, 851, 965, 1127, 1222, 1667, 2487
Msp20I TGGCCA 1 cut(s) 1589
MspA1I CMGCKG 1 cut(s) 2377
MspI CCGG 4 cut(s) 645, 2250, 2308, 2653
MunI CAATTG 1 cut(s) 1839
Mva1269I GAATGC 2 cut(s) 1551, 2081
MvaI CCWGG 7 cut(s) 182, 244, 1470, 2324, 2343, 2538, 2675
NarI GGCGCC 1 cut(s) 166
NciI CCSGG 4 cut(s) 645, 2251, 2653, 2654
NcoI CCATGG 1 cut(s) 1361
NdeI CATATG 1 cut(s) 2626
NheI GCTAGC 1 cut(s) 2822
NlaIV GGNNCC 9 cut(s) 104, 167, 579, 1218, 1300, 1474, 1711, 1953, 2529
NmeAIII GCCGAG 1 cut(s) 883
NmuCI GTSAC 1 cut(s) 842
NspI RCATGY 3 cut(s) 2422, 2476, 3043
NspV TTCGAA 1 cut(s) 2776
OliI CACNNNNGTG 1 cut(s) 851
PceI AGGCCT 1 cut(s) 43
PciI ACATGT 1 cut(s) 2472
PciSI GCTCTTC 1 cut(s) 1746
PcsI WCGNNNNNNNCGW 1 cut(s) 2824
PctI GAATGC 2 cut(s) 1551, 2081
PdmI GAANNNNTTC 1 cut(s) 726
PfeI GAWTC 9 cut(s) 620, 689, 1145, 1732, 1988, 2153, 2284, 2389, 3002
PflMI CCANNNNNTGG 1 cut(s) 1469
PfoI TCCNGGA 2 cut(s) 1468, 2673
PinAI ACCGGT 1 cut(s) 2307
PleI GAGTC 5 cut(s) 106, 224, 1721, 1978, 2095
PluTI GGCGCC 1 cut(s) 169
PpsI GAGTC 5 cut(s) 106, 224, 1721, 1978, 2095
PpuMI RGGWCCY 1 cut(s) 102
PscI ACATGT 1 cut(s) 2472
Psp124BI GAGCTC 1 cut(s) 1521
Psp5II RGGWCCY 1 cut(s) 102
Psp6I CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
PspGI CCWGG 7 cut(s) 180, 242, 1468, 2322, 2341, 2536, 2673
PspN4I GGNNCC 9 cut(s) 104, 167, 579, 1218, 1300, 1474, 1711, 1953, 2529
PspPPI RGGWCCY 1 cut(s) 102
PstNI CAGNNNCTG 2 cut(s) 1469, 1877
PsuI RGATCY 8 cut(s) 724, 1027, 1365, 1926, 1951, 2316, 2527, 2941
PvuII CAGCTG 1 cut(s) 2377
RsaI GTAC 6 cut(s) 711, 1300, 1661, 1804, 2477, 2705
RsaNI GTAC 6 cut(s) 710, 1299, 1660, 1803, 2476, 2704
RseI CAYNNNNRTG 7 cut(s) 840, 851, 965, 1127, 1222, 1667, 2487
SacI GAGCTC 1 cut(s) 1521
SapI GCTCTTC 1 cut(s) 1746
SaqAI TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
SchI GAGTC 5 cut(s) 106, 224, 1721, 1979, 2096
SduI GDGCHC 5 cut(s) 1219, 1521, 2797, 2833, 3106
SexAI ACCWGGT 1 cut(s) 2536
SfaNI GCATC 9 cut(s) 795, 835, 969, 1375, 1642, 1891, 2416, 2668, 3082
SfcI CTRYAG 2 cut(s) 468, 885
SfoI GGCGCC 1 cut(s) 167
SfuI TTCGAA 1 cut(s) 2776
SinI GGWCC 8 cut(s) 102, 521, 626, 926, 1710, 2055, 2305, 2968
SmaI CCCGGG 1 cut(s) 2654
SmiMI CAYNNNNRTG 7 cut(s) 840, 851, 965, 1127, 1222, 1667, 2487
SmlI CTYRAG 1 cut(s) 2519
SmoI CTYRAG 1 cut(s) 2519
SseBI AGGCCT 1 cut(s) 43
SsiI CCGC 9 cut(s) 254, 987, 1135, 1156, 1896, 1956, 2254, 2320, 3086
SspDI GGCGCC 1 cut(s) 165
SspI AATATT 2 cut(s) 337, 1269
SspMI CTAG 8 cut(s) 99, 234, 486, 630, 1568, 2265, 2786, 2823
SstI GAGCTC 1 cut(s) 1521
StuI AGGCCT 1 cut(s) 43
StyI CCWWGG 2 cut(s) 573, 1361
TaaI ACNGT 6 cut(s) 362, 434, 1714, 2002, 2411, 2692
TaiI ACGT 2 cut(s) 2746, 2935
TaqI TCGA 5 cut(s) 1558, 1730, 2085, 2776, 3044
TatI WGTACW 3 cut(s) 709, 1659, 1802
TauI GCSGC 1 cut(s) 990
TfiI GAWTC 9 cut(s) 620, 689, 1145, 1732, 1988, 2153, 2284, 2389, 3002
Tru1I TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
Tru9I TTAA 8 cut(s) 567, 741, 870, 1038, 1095, 1160, 2813, 3072
TscAI CASTG 4 cut(s) 1448, 1780, 2007, 2877
TseFI GTSAC 1 cut(s) 842
TseI GCWGC 9 cut(s) 185, 251, 698, 2126, 2336, 2855, 2885, 2956, 3119
Tsp45I GTSAC 1 cut(s) 842
TspGWI ACGGA 1 cut(s) 2595
TspMI CCCGGG 1 cut(s) 2652
TspRI CASTG 4 cut(s) 1448, 1780, 2007, 2877
Van91I CCANNNNNTGG 1 cut(s) 1469
VneI GTGCAC 1 cut(s) 3102
VpaK11BI GGWCC 8 cut(s) 102, 521, 626, 926, 1710, 2055, 2305, 2968
XapI RAATTY 6 cut(s) 1007, 1814, 2217, 2275, 2347, 2762
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 3 cut(s) 2422, 2476, 3043
XcmI CCANNNNNNNNNTGG 1 cut(s) 1700
XmaI CCCGGG 1 cut(s) 2652
XmnI GAANNNNTTC 1 cut(s) 726
XspI CTAG 8 cut(s) 99, 234, 486, 630, 1568, 2265, 2786, 2823
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.