Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011243

Physical Location & Seq

Genomic Coordinates Reverse (-)

34486117 .. 34488521

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G024260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGCTATGGGGTTCTCCTCCTTCCAGACCAGCCATTTCAGGCCTTGCCCTTCTTATTTCTCTTTATTACGGGCTTGTCCTCTGTCTTCTTCGTCTTCTAGGTCCCTATGGACTCCTTCAGTTTCAAGGCGAGTTTTGGATTGCAAGCCAGAGGTCCATGTTGGGCGCCTAAGGGGTGTCCAGGCTACCAAATCATATAATACTTTGACCTCTGAAGGAAAATCCAACGACTCTAGATATGCCTGGAGAGCTGCGGTTACTCGCCTGAGGAAAGAAAAACAGGAAGTGGAAAGTTCTTACAGAAGTAAGACATACTCTGAAGGAAATATAAAAACGATTACCCCTGAAAAGGTTGATAACAGTAGCTATGAGATGGGGGAGGTAACTTTATATGAGACACATGGTGAAGGAAGTAATGTGGACGGAGTAAATGGTTATGCACACGATAATCCAGACGTAGTAGCTTCTGTAGGAATTCACAATCCTAGTGTGGAAAAGGTGAATGGTTTTGCACATGATGGTCCAAGACTGAGTGTGGCTACGCCACCCAGATCAGGGAAGGAAGTTAAGTCCAAGGGGCCATTATTGGGGAAGACCTCAAAGGTCAGGAAAGGGATTGATTCTGGACCTAGTAAAGATGAAGCCGGTAATGTGATGAACAGGGACAAGTCCGATGTAAAATCTTCTGAATCTAAAGCTGCTACACCAGTACATAGTAAGGAAGATCTTCGCAAGACACTTAATAACATTTACGACAAAGTTCTCATTGTCAATAGTGTCTCTATTGCAAAGAAAGTCGTTAGGATGCTTAGAGGTGAATATAGGCATCTTGTCCATGCCTGTGACACAGAGGTGGCCGAGATAGATGTTAAGAAAGAAACACCTGTAGATCATGGACAGATAATATGCTTCAGTATATATTCTGGACCAGATGTGGATTTTGGAAATGGAAAGTCATGCATCTGGGTGGATGTTCTTGATGGCGGCGGCAAGGAACTTCTACTTGAATTTGCTCCATTTTTTGAGGATCCCTCCATTAAAAAGGTTTGGCACAATTACAGCTTTGATAACCGTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000002 GO:0003674 GO:0003824 GO:0003887 GO:0004518 GO:0004527 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006264 GO:0006725 GO:0006807 GO:0006996 GO:0007005 GO:0008150 GO:0008152 GO:0008409 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009657 GO:0009987 GO:0016043 GO:0016740 GO:0016772 GO:0016779 GO:0016787 GO:0016788 GO:0018130 GO:0019438 GO:0032042 GO:0033258 GO:0033259 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0140097 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03440 map00230 map00240 map01100 map03030 map03410 map03420 map03440

Pfam Domains

Protein Families

DNA_pol_A DNA_pol_A_exo1

Protein Analysis

359

Amino Acids

39.68

Weight (kDa)

8.82

Isoelectric Point (pI)

35.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011243)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50840 AT1G50840 AT3G20540 AT3G20540
fragaria_vesca	FvH4_3g22230
malus_domestica	MD11G1221900.v1.1
prunus_persica	Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1 Prupe.4G209500_v2.0.a1
pyrus_communis	pycom11g19570
rosa_chinensis	RchiOBHm_Chr5g0038301
rosa_laevigata	RLG00000033845
rosa_multiflora	Rmu_co8325491.1_g000001
rosa_roxburghii	Rroxscaffold_1G00042720
rosa_rugosa	Rorug05G0171900
rosa_samantha	Rh5AG259200 Rh5BG263000 Rh5CG295400 Rh5DG272000
rosa_wichuraiana	Rw5G024260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	165
AciI	CCGC	3 cut(s)	254, 984, 987
AclWI	GGATC	2 cut(s)	1022, 1035
AcoI	YGGCCR	1 cut(s)	855
AcsI	RAATTY	2 cut(s)	474, 1007
AcuI	CTGAAG	4 cut(s)	102, 234, 339, 895
AcyI	GRCGYC	1 cut(s)	166
AdeI	CACNNNGTG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	711
AfiI	CCNNNNNNNGG	4 cut(s)	349, 554, 555, 587
AgsI	TTSAA	2 cut(s)	126, 1007
AjnI	CCWGG	2 cut(s)	180, 242
AleI	CACNNNNGTG	1 cut(s)	851
AluBI	AGCT	5 cut(s)	251, 366, 464, 698, 1062
AluI	AGCT	5 cut(s)	251, 366, 464, 698, 1062
Alw26I	GTCTC	2 cut(s)	389, 784
AlwI	GGATC	2 cut(s)	1022, 1035
AoxI	GGCC	3 cut(s)	41, 578, 855
ApeKI	GCWGC	2 cut(s)	251, 698
ApoI	RAATTY	2 cut(s)	474, 1007
Asp700I	GAANNNNTTC	1 cut(s)	726
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	6 cut(s)	102, 154, 521, 578, 626, 926
AsuHPI	GGTGA	3 cut(s)	416, 511, 827
AvaII	GGWCC	5 cut(s)	102, 154, 521, 626, 926
AxyI	CCTNAGG	2 cut(s)	170, 266
BamHI	GGATCC	1 cut(s)	1027
BanI	GGYRCC	1 cut(s)	165
BbsI	GAAGAC	3 cut(s)	78, 87, 599
BbvI	GCAGC	2 cut(s)	238, 685
BccI	CCATC	3 cut(s)	367, 512, 974
BciT130I	CCWGG	2 cut(s)	182, 244
BcoDI	GTCTC	2 cut(s)	389, 784
BfaI	CTAG	4 cut(s)	99, 234, 486, 630
BfmI	CTRYAG	2 cut(s)	468, 885
BfoI	RGCGCY	1 cut(s)	169
BglII	AGATCT	1 cut(s)	724
BisI	GCNGC	4 cut(s)	252, 699, 985, 988
BlsI	GCNGC	4 cut(s)	253, 700, 986, 989
Bme1390I	CCNGG	2 cut(s)	182, 244
Bme18I	GGWCC	5 cut(s)	102, 154, 521, 626, 926
BmgT120I	GGNCC	6 cut(s)	102, 154, 521, 578, 626, 926
BmiI	GGNNCC	4 cut(s)	104, 167, 579, 1029
BmrFI	CCNGG	2 cut(s)	182, 244
BmsI	GCATC	3 cut(s)	795, 835, 969
BpiI	GAAGAC	3 cut(s)	78, 87, 599
BplI	GAGNNNNNCTC	2 cut(s)	1016, 1048
BpmI	CTGGAG	1 cut(s)	265
BsaHI	GRCGYC	1 cut(s)	166
BsaJI	CCNNGG	1 cut(s)	573
Bsc4I	CCNNNNNNNGG	4 cut(s)	349, 554, 555, 587
Bse118I	RCCGGY	1 cut(s)	644
Bse1I	ACTGG	1 cut(s)	707
Bse21I	CCTNAGG	2 cut(s)	170, 266
BseBI	CCWGG	2 cut(s)	182, 244
BseDI	CCNNGG	1 cut(s)	573
BseGI	GGATG	2 cut(s)	810, 976
BseLI	CCNNNNNNNGG	4 cut(s)	349, 554, 555, 587
BseMII	CTCAG	2 cut(s)	257, 521
BseNI	ACTGG	1 cut(s)	707
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	238, 685
BshFI	GGCC	3 cut(s)	43, 580, 857
BshNI	GGYRCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	645
BslFI	GGGAC	2 cut(s)	88, 677
BslI	CCNNNNNNNGG	4 cut(s)	349, 554, 555, 587
BsmAI	GTCTC	2 cut(s)	389, 784
BsmFI	GGGAC	2 cut(s)	88, 677
BsnI	GGCC	3 cut(s)	43, 580, 857
Bsp143I	GATC	4 cut(s)	551, 724, 889, 1027
BspACI	CCGC	3 cut(s)	254, 984, 987
BspANI	GGCC	3 cut(s)	43, 580, 857
BspCNI	CTCAG	2 cut(s)	258, 522
BspLI	GGNNCC	4 cut(s)	104, 167, 579, 1029
BspPI	GGATC	2 cut(s)	1022, 1035
BspT107I	GGYRCC	1 cut(s)	165
BsrFI	RCCGGY	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	707
BssAI	RCCGGY	1 cut(s)	644
BssECI	CCNNGG	1 cut(s)	573
BssMI	GATC	4 cut(s)	551, 724, 889, 1027
BssNI	GRCGYC	1 cut(s)	166
BssT1I	CCWWGG	1 cut(s)	573
Bst2UI	CCWGG	2 cut(s)	182, 244
Bst4CI	ACNGT	2 cut(s)	362, 1073
BstACI	GRCGYC	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	146
BstDEI	CTNAG	4 cut(s)	170, 266, 530, 809
BstF5I	GGATG	2 cut(s)	810, 976
BstH2I	RGCGCY	1 cut(s)	169
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	4 cut(s)	554, 727, 892, 1030
BstMAI	GTCTC	2 cut(s)	389, 784
BstMBI	GATC	4 cut(s)	551, 724, 889, 1027
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	182, 244
BstSCI	CCNGG	2 cut(s)	180, 242
BstSFI	CTRYAG	2 cut(s)	468, 885
BstV1I	GCAGC	2 cut(s)	238, 685
BstV2I	GAAGAC	3 cut(s)	78, 87, 599
BstX2I	RGATCY	2 cut(s)	724, 1027
BstYI	RGATCY	2 cut(s)	724, 1027
Bsu36I	CCTNAGG	2 cut(s)	170, 266
BsuRI	GGCC	3 cut(s)	43, 580, 857
BtsCI	GGATG	2 cut(s)	810, 976
Cac8I	GCNNGC	1 cut(s)	146
CfoI	GCGC	1 cut(s)	168
Cfr10I	RCCGGY	1 cut(s)	644
Cfr13I	GGNCC	6 cut(s)	102, 154, 521, 578, 626, 926
Csp6I	GTAC	1 cut(s)	710
CviAII	CATG	6 cut(s)	158, 401, 515, 836, 893, 957
CviQI	GTAC	1 cut(s)	710
DdeI	CTNAG	4 cut(s)	170, 266, 530, 809
DinI	GGCGCC	1 cut(s)	167
DpnI	GATC	4 cut(s)	553, 726, 891, 1029
DpnII	GATC	4 cut(s)	551, 724, 889, 1027
DraIII	CACNNNGTG	1 cut(s)	404
EaeI	YGGCCR	1 cut(s)	855
Eco130I	CCWWGG	1 cut(s)	573
Eco147I	AGGCCT	1 cut(s)	43
Eco47I	GGWCC	5 cut(s)	102, 154, 521, 626, 926
Eco57I	CTGAAG	4 cut(s)	102, 234, 339, 895
Eco81I	CCTNAGG	2 cut(s)	170, 266
EcoO109I	RGGNCCY	1 cut(s)	102
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	180, 242
EcoT14I	CCWWGG	1 cut(s)	573
EcoT22I	ATGCAT	1 cut(s)	962
EgeI	GGCGCC	1 cut(s)	167
EheI	GGCGCC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	573
FaeI	CATG	6 cut(s)	161, 404, 518, 839, 896, 960
FaqI	GGGAC	2 cut(s)	88, 677
FatI	CATG	6 cut(s)	157, 400, 514, 835, 892, 956
Fnu4HI	GCNGC	4 cut(s)	252, 699, 985, 988
FokI	GGATG	2 cut(s)	817, 983
Fsp4HI	GCNGC	4 cut(s)	252, 699, 985, 988
FspBI	CTAG	4 cut(s)	99, 234, 486, 630
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	4 cut(s)	252, 699, 985, 988
GsuI	CTGGAG	1 cut(s)	265
HaeII	RGCGCY	1 cut(s)	169
HaeIII	GGCC	3 cut(s)	43, 580, 857
HapII	CCGG	1 cut(s)	645
HhaI	GCGC	1 cut(s)	168
Hin1I	GRCGYC	1 cut(s)	166
Hin1II	CATG	6 cut(s)	161, 404, 518, 839, 896, 960
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	112, 230, 620, 689
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	3 cut(s)	416, 511, 827
Hpy166II	GTNNAC	1 cut(s)	421
Hpy188I	TCNGA	4 cut(s)	214, 319, 673, 688
Hpy188III	TCNNGA	7 cut(s)	25, 234, 452, 607, 624, 924, 977
Hpy8I	GTNNAC	1 cut(s)	421
HpyAV	CCTTC	7 cut(s)	31, 60, 126, 209, 314, 401, 553
HpyCH4III	ACNGT	2 cut(s)	362, 1073
HpyCH4IV	ACGT	1 cut(s)	456
HpyCH4V	TGCA	5 cut(s)	144, 440, 512, 788, 960
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	4 cut(s)	170, 266, 530, 809
HpySE526I	ACGT	1 cut(s)	456
Hsp92I	GRCGYC	1 cut(s)	166
Hsp92II	CATG	6 cut(s)	161, 404, 518, 839, 896, 960
HspAI	GCGC	1 cut(s)	166
KasI	GGCGCC	1 cut(s)	165
Kzo9I	GATC	4 cut(s)	551, 724, 889, 1027
LmnI	GCTCC	1 cut(s)	1018
Lsp1109I	GCAGC	2 cut(s)	238, 685
LweI	GCATC	3 cut(s)	795, 835, 969
MaeI	CTAG	4 cut(s)	99, 234, 486, 630
MaeII	ACGT	1 cut(s)	456
MaeIII	GTNAC	3 cut(s)	256, 382, 842
MalI	GATC	4 cut(s)	553, 726, 891, 1029
MboI	GATC	4 cut(s)	551, 724, 889, 1027
MboII	GAAGA	7 cut(s)	78, 81, 87, 604, 675, 719, 734
MflI	RGATCY	2 cut(s)	724, 1027
MluCI	AATT	4 cut(s)	474, 1007, 1054, 1075
Mly113I	GGCGCC	1 cut(s)	166
MlyI	GAGTC	2 cut(s)	106, 224
MmeI	TCCRAC	1 cut(s)	249
Mph1103I	ATGCAT	1 cut(s)	962
MroXI	GAANNNNTTC	1 cut(s)	726
MseI	TTAA	4 cut(s)	567, 741, 870, 1038
MslI	CAYNNNNRTG	3 cut(s)	840, 851, 965
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	2 cut(s)	182, 244
MvaI	CCWGG	2 cut(s)	182, 244
MwoI	GCNNNNNNNGC	1 cut(s)	248
NarI	GGCGCC	1 cut(s)	166
NdeII	GATC	4 cut(s)	551, 724, 889, 1027
NlaIII	CATG	6 cut(s)	161, 404, 518, 839, 896, 960
NlaIV	GGNNCC	4 cut(s)	104, 167, 579, 1029
NmeAIII	GCCGAG	1 cut(s)	883
NmuCI	GTSAC	1 cut(s)	842
NsiI	ATGCAT	1 cut(s)	962
OliI	CACNNNNGTG	1 cut(s)	851
PceI	AGGCCT	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	726
PfeI	GAWTC	2 cut(s)	620, 689
PkrI	GCNGC	4 cut(s)	253, 700, 986, 989
PleI	GAGTC	2 cut(s)	106, 224
PluTI	GGCGCC	1 cut(s)	169
PpsI	GAGTC	2 cut(s)	106, 224
PpuMI	RGGWCCY	1 cut(s)	102
Psp5II	RGGWCCY	1 cut(s)	102
Psp6I	CCWGG	2 cut(s)	180, 242
PspGI	CCWGG	2 cut(s)	180, 242
PspN4I	GGNNCC	4 cut(s)	104, 167, 579, 1029
PspPI	GGNCC	6 cut(s)	102, 154, 521, 578, 626, 926
PspPPI	RGGWCCY	1 cut(s)	102
PsuI	RGATCY	2 cut(s)	724, 1027
RsaI	GTAC	1 cut(s)	711
RsaNI	GTAC	1 cut(s)	710
RseI	CAYNNNNRTG	3 cut(s)	840, 851, 965
SaqAI	TTAA	4 cut(s)	567, 741, 870, 1038
SatI	GCNGC	4 cut(s)	252, 699, 985, 988
Sau3AI	GATC	4 cut(s)	551, 724, 889, 1027
Sau96I	GGNCC	6 cut(s)	102, 154, 521, 578, 626, 926
SchI	GAGTC	2 cut(s)	106, 224
ScrFI	CCNGG	2 cut(s)	182, 244
SfaNI	GCATC	3 cut(s)	795, 835, 969
SfcI	CTRYAG	2 cut(s)	468, 885
SfoI	GGCGCC	1 cut(s)	167
SinI	GGWCC	5 cut(s)	102, 154, 521, 626, 926
SmiMI	CAYNNNNRTG	3 cut(s)	840, 851, 965
Sse9I	AATT	4 cut(s)	474, 1007, 1054, 1075
SseBI	AGGCCT	1 cut(s)	43
SsiI	CCGC	3 cut(s)	254, 984, 987
SspDI	GGCGCC	1 cut(s)	165
SspMI	CTAG	4 cut(s)	99, 234, 486, 630
StuI	AGGCCT	1 cut(s)	43
StyD4I	CCNGG	2 cut(s)	180, 242
StyI	CCWWGG	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	362, 1073
TaiI	ACGT	1 cut(s)	459
TasI	AATT	4 cut(s)	474, 1007, 1054, 1075
TatI	WGTACW	1 cut(s)	709
TauI	GCSGC	2 cut(s)	987, 990
TfiI	GAWTC	2 cut(s)	620, 689
Tru1I	TTAA	4 cut(s)	567, 741, 870, 1038
Tru9I	TTAA	4 cut(s)	567, 741, 870, 1038
TseFI	GTSAC	1 cut(s)	842
TseI	GCWGC	2 cut(s)	251, 698
Tsp45I	GTSAC	1 cut(s)	842
TspDTI	ATGAA	2 cut(s)	654, 671
TspGWI	ACGGA	1 cut(s)	438
VpaK11BI	GGWCC	5 cut(s)	102, 154, 521, 626, 926
XapI	RAATTY	2 cut(s)	474, 1007
XbaI	TCTAGA	1 cut(s)	233
XmnI	GAANNNNTTC	1 cut(s)	726
XspI	CTAG	4 cut(s)	99, 234, 486, 630
Zsp2I	ATGCAT	1 cut(s)	962

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.